Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

6987240 .. 6988164

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAATCTATTAGCAGCAGGTCATGACAGTGGGATGATCGTCTTTAAGTTAGAGAGGGAAAGACCAGCCTTTGCCGTCAGTGGTGATTCTCTGTTCTATGCTAAAGACCGCTTTTTGAAAGACAGCATTACAAGGGGTGACAGTACTCAAGATGCTAAAAGAGGTGTTGGAGGTTCAGCTGTGTTTGTAGCACGGAATAGGTTTGCTGTGCTTGAGAAAACCAGCAACTCTGTGTTGGTAATTTGCTGTGCAGGTCAGACGACAGTGTTTATATTTGATCTCCAGCAGAGGACTGTTCTTGGTGAACTTCAAACCCCCTTCATCAAGTATGTTGTTTGGTCTAACGACATGGAAAGTATTGCCTTGCTGAGCAAACATGCCATAATTATTGCTAGCAAGAGGCTTGTGCACCAGTGCACTCTTCATGAGACAATCCGTGTAAAGAGTGGTGGTTGGGATGACAAAGGTGTTTTCATTTATTCAACCCTGAATCATATCACGTATTGTCTACCTAATGGAGATAGTGGAATAATAAGAACCCTTGATGTTCCTATCTACATTACGAAAGTTTCTGGAAATACCATCTTCTGCTTGGATCGGGATGGGAAAAATAAGGCCATAGTTATTGATGCCACAGAAGGATCCGGCTCCTCTAAAGTGAGGAGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

224

Amino Acids

24.46

Weight (kDa)

8.97

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B-prop_COPA_B_2nd	PF04053	80 - 199	1.6e-37	COPA/B second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	8, 242
AccI	GTMKAC	1 cut(s)	508
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	3 cut(s)	603, 636, 649
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	118, 311, 483
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw21I	GWGCWC	2 cut(s)	411, 419
Alw26I	GTCTC	1 cut(s)	422
Alw44I	GTGCAC	2 cut(s)	407, 415
AlwI	GGATC	3 cut(s)	603, 636, 649
AoxI	GGCC	1 cut(s)	615
ApaLI	GTGCAC	2 cut(s)	407, 415
ApeKI	GCWGC	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	95, 149, 314
AsuNHI	GCTAGC	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	411, 419
BamHI	GGATCC	1 cut(s)	641
Bbv12I	GWGCWC	2 cut(s)	411, 419
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	590, 596
BceAI	ACGGC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	393
BfuAI	ACCTGC	2 cut(s)	8, 242
BisI	GCNGC	1 cut(s)	15
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	643, 649
BmsI	GCATC	2 cut(s)	142, 619
BmtI	GCTAGC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	132, 233
BsaAI	YACGTR	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	412
BseGI	GGATG	3 cut(s)	39, 463, 607
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	640
BseSI	GKGCMC	2 cut(s)	411, 419
BseXI	GCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	617
BsiHKAI	GWGCWC	2 cut(s)	411, 419
BsiSI	CCGG	1 cut(s)	645
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	411, 419
Bsp143I	GATC	4 cut(s)	36, 277, 595, 641
Bsp1720I	GCTNAGC	1 cut(s)	368
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	1 cut(s)	360
BspHI	TCATGA	2 cut(s)	22, 424
BspLI	GGNNCC	2 cut(s)	643, 649
BspMI	ACCTGC	2 cut(s)	8, 242
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	3 cut(s)	603, 636, 649
BsrI	ACTGG	1 cut(s)	412
BssMI	GATC	4 cut(s)	36, 277, 595, 641
Bst4CI	ACNGT	4 cut(s)	29, 143, 265, 295
Bst6I	CTCTTC	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	39, 463, 607
BstKTI	GATC	4 cut(s)	39, 280, 598, 644
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	36, 277, 595, 641
BstNSI	RCATGY	1 cut(s)	380
BstSLI	GKGCMC	2 cut(s)	411, 419
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	3 cut(s)	39, 463, 607
BtsIMutI	CAGTG	4 cut(s)	34, 85, 270, 419
BveI	ACCTGC	2 cut(s)	8, 242
Cac8I	GCNNGC	1 cut(s)	394
CciI	TCATGA	2 cut(s)	22, 424
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	4 cut(s)	23, 349, 377, 425
CviJI	RGCY	5 cut(s)	68, 179, 403, 617, 648
CviKI_1	RGCY	5 cut(s)	68, 179, 403, 617, 648
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	4 cut(s)	38, 279, 597, 643
DpnII	GATC	4 cut(s)	36, 277, 595, 641
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
FaeI	CATG	4 cut(s)	26, 352, 380, 428
FatI	CATG	4 cut(s)	22, 348, 376, 424
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	3 cut(s)	46, 470, 614
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	1 cut(s)	645
Hin1II	CATG	4 cut(s)	26, 352, 380, 428
HinfI	GANTC	4 cut(s)	4, 86, 490, 664
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	3 cut(s)	95, 149, 314
Hpy166II	GTNNAC	4 cut(s)	305, 409, 417, 509
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	5 cut(s)	23, 149, 425, 573, 599
Hpy8I	GTNNAC	4 cut(s)	305, 409, 417, 509
HpyAV	CCTTC	2 cut(s)	328, 632
HpyCH4III	ACNGT	4 cut(s)	29, 143, 265, 295
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	3 cut(s)	251, 409, 417
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	4 cut(s)	26, 352, 380, 428
Kzo9I	GATC	4 cut(s)	36, 277, 595, 641
LmnI	GCTCC	1 cut(s)	653
LpnPI	CCDG	9 cut(s)	3, 78, 235, 237, 296, 425, 500, 558, 658
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	2 cut(s)	142, 619
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	4 cut(s)	38, 279, 597, 643
MboI	GATC	4 cut(s)	36, 277, 595, 641
MboII	GAAGA	2 cut(s)	413, 577
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	2 cut(s)	411, 419
MluCI	AATT	2 cut(s)	240, 384
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	7 cut(s)	48, 155, 164, 282, 393, 654, 661
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	645
NdeII	GATC	4 cut(s)	36, 277, 595, 641
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	4 cut(s)	26, 352, 380, 428
NlaIV	GGNNCC	2 cut(s)	643, 649
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	380
PagI	TCATGA	2 cut(s)	22, 424
PfeI	GAWTC	3 cut(s)	4, 86, 490
PkrI	GCNGC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	643, 649
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	36, 277, 595, 641
ScaI	AGTACT	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	411, 419
SetI	ASST	9 cut(s)	22, 166, 175, 181, 203, 256, 469, 503, 514
SfaNI	GCATC	2 cut(s)	142, 619
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	147, 212
SmoI	CTYRAG	2 cut(s)	147, 212
Sse9I	AATT	2 cut(s)	240, 384
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	393
TaaI	ACNGT	4 cut(s)	29, 143, 265, 295
TaiI	ACGT	1 cut(s)	503
TasI	AATT	2 cut(s)	240, 384
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	4, 86, 490
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	4 cut(s)	34, 85, 270, 419
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	4 cut(s)	17, 310, 413, 463
TspGWI	ACGGA	3 cut(s)	208, 425, 657
TspRI	CASTG	4 cut(s)	34, 85, 270, 419
VneI	GTGCAC	2 cut(s)	407, 415
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	508
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.