Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34307213 .. 34308085

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1250700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACCTCTTGGCTGCTGGCCATGATAGTGGCATGATTGTCTTTAAATTGGAGAGGGAGCGTCCTGCCTTTTCTGTTAGCGGTGATTCAATGTACTATGTTAAAGATCGTGGTTCTTCCAACTTGAATCAAGGGGCAAAGACACTATCTTACAGCCCCACAGAAAATGCTGCTTTGATATGTTCAGATATGGAAGGGGGGTCTTATGAACTATACGTTATACCCAAAGATAGCTTTGGTCGGGGTGATACTGCGCAGGAGGCAAAAAGAGGAATTGGAGGCCCTACCGATTCAGAGAATTATTGTTGGGGAGCTAGGGATGACAATGGCGTCTTCATATATACAACCTTGAACCACAGCAAATACTGCCTTCCTAATGGGGATAGTAGAATCATCAGGACCCTCGACGCTCCTGTATATATAACAAAAGTGTATGGAAACACCATACATTGCTTGGGTCGAGATGGGAAGAACTGTGCCATTGTTGTTGATGCAACAGAATATGTTTTCAAGTTATCCTTACTGAAGAAGAGGTATGACCAGGTGATGAGCATGATAAGGAGTTCTGAGCTGTGTGGCCAGGCCATGATTGCATATCTACAGCAGAAAGGTTTCCCTGAGGTTGCCCTTCATTTTGTGAAGGATGAGAGGACTCGCTTCAACTTGGCACTAGGGAGCGGGAACATCCAGATTGCTGTTGCTTCTGCCAAGGAAATTGATGAGAAAGATCACTGGTATCGATTGGGAGTGGAGGCCCTTCGTCAGGGTAATGCAAATTCATGGGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

264

Amino Acids

29.12

Weight (kDa)

6.53

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B-prop_COPA_B_2nd	PF04053	107 - 152	5.1e-11	COPA/B second beta-propeller
TPR_COPA_B	PF23953	195 - 257	9.9e-09	COPA/B TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc16I	TGCGCA	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	678
AciI	CCGC	2 cut(s)	81, 678
AcoI	YGGCCR	2 cut(s)	19, 577
AcsI	RAATTY	1 cut(s)	775
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	763
AgsI	TTSAA	5 cut(s)	90, 127, 352, 511, 661
AjnI	CCWGG	2 cut(s)	540, 579
AluBI	AGCT	3 cut(s)	234, 314, 571
AluI	AGCT	3 cut(s)	234, 314, 571
AoxI	GGCC	5 cut(s)	19, 280, 577, 582, 753
ApeKI	GCWGC	2 cut(s)	14, 170
ApoI	RAATTY	1 cut(s)	775
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	281, 399, 754
AsuHPI	GGTGA	3 cut(s)	95, 257, 556
AvaII	GGWCC	1 cut(s)	399
AxyI	CCTNAGG	1 cut(s)	618
BalI	TGGCCA	2 cut(s)	21, 579
BanII	GRGCYC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	458
BciT130I	CCWGG	2 cut(s)	542, 581
BfaI	CTAG	2 cut(s)	315, 671
BfmI	CTRYAG	1 cut(s)	599
BisI	GCNGC	2 cut(s)	15, 171
BlsI	GCNGC	2 cut(s)	16, 172
Bme1390I	CCNGG	2 cut(s)	542, 581
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	3 cut(s)	281, 399, 754
BmiI	GGNNCC	2 cut(s)	401, 786
BmrFI	CCNGG	2 cut(s)	542, 581
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	739
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse1I	ACTGG	1 cut(s)	737
Bse21I	CCTNAGG	1 cut(s)	618
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	542, 581
BseCI	ATCGAT	1 cut(s)	739
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	3 cut(s)	325, 649, 684
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	558, 609
BseNI	ACTGG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	5 cut(s)	21, 282, 579, 584, 755
BshVI	ATCGAT	1 cut(s)	739
BslI	CCNNNNNNNGG	1 cut(s)	763
BsnI	GGCC	5 cut(s)	21, 282, 579, 584, 755
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	2 cut(s)	106, 727
BspACI	CCGC	2 cut(s)	81, 678
BspANI	GGCC	5 cut(s)	21, 282, 579, 584, 755
BspCNI	CTCAG	2 cut(s)	559, 610
BspDI	ATCGAT	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	401, 786
BsrBI	CCGCTC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	2 cut(s)	106, 727
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	708
Bst2UI	CCWGG	2 cut(s)	542, 581
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	524
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	567, 618
BstENI	CCTNNNNNAGG	1 cut(s)	761
BstF5I	GGATG	3 cut(s)	325, 649, 684
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	109, 730
BstMBI	GATC	2 cut(s)	106, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 366, 590
BstNI	CCWGG	2 cut(s)	542, 581
BstSCI	CCNGG	2 cut(s)	540, 579
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	739
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	5 cut(s)	21, 282, 579, 584, 755
BsuTUI	ATCGAT	1 cut(s)	739
BtsCI	GGATG	3 cut(s)	325, 649, 684
BtsIMutI	CAGTG	1 cut(s)	730
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	281, 399, 754
ClaI	ATCGAT	1 cut(s)	739
CseI	GACGC	3 cut(s)	50, 319, 416
CsiI	ACCWGGT	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	6 cut(s)	23, 34, 553, 586, 780, 789
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	567, 618
DpnI	GATC	2 cut(s)	108, 729
DpnII	GATC	2 cut(s)	106, 727
DraI	TTTAAA	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	2 cut(s)	19, 577
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	545
Eco81I	CCTNAGG	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	761
EcoO109I	RGGNCCY	3 cut(s)	281, 399, 754
EcoRII	CCWGG	2 cut(s)	540, 579
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	6 cut(s)	26, 37, 556, 589, 783, 792
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	6 cut(s)	22, 33, 552, 585, 779, 788
FauI	CCCGC	1 cut(s)	671
Fnu4HI	GCNGC	2 cut(s)	15, 171
FokI	GGATG	3 cut(s)	332, 656, 671
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	2 cut(s)	15, 171
FspBI	CTAG	2 cut(s)	315, 671
FspI	TGCGCA	1 cut(s)	255
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	15, 171
HaeIII	GGCC	5 cut(s)	21, 282, 579, 584, 755
HgaI	GACGC	3 cut(s)	50, 319, 416
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	6 cut(s)	26, 37, 556, 589, 783, 792
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	5 cut(s)	86, 127, 290, 390, 652
HphI	GGTGA	3 cut(s)	95, 257, 556
Hpy188I	TCNGA	3 cut(s)	187, 295, 568
Hpy188III	TCNNGA	3 cut(s)	397, 461, 688
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	5 cut(s)	188, 380, 634, 638, 767
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	494, 593, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 366, 590
HpyF3I	CTNAG	2 cut(s)	567, 618
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	6 cut(s)	26, 37, 556, 589, 783, 792
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	106, 727
LmnI	GCTCC	5 cut(s)	58, 311, 415, 675, 790
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	481
MabI	ACCWGGT	1 cut(s)	540
MaeI	CTAG	2 cut(s)	315, 671
MaeII	ACGT	1 cut(s)	216
MalI	GATC	2 cut(s)	108, 729
MbiI	CCGCTC	1 cut(s)	678
MboI	GATC	2 cut(s)	106, 727
MboII	GAAGA	5 cut(s)	108, 325, 481, 538, 541
MhlI	GDGCHC	1 cut(s)	787
MlsI	TGGCCA	2 cut(s)	21, 579
MluCI	AATT	5 cut(s)	47, 273, 298, 714, 775
MluNI	TGGCCA	2 cut(s)	21, 579
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	2 cut(s)	21, 579
MroXI	GAANNNNTTC	1 cut(s)	611
MscI	TGGCCA	2 cut(s)	21, 579
MseI	TTAA	2 cut(s)	45, 102
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	2 cut(s)	21, 579
MspR9I	CCNGG	2 cut(s)	542, 581
MvaI	CCWGG	2 cut(s)	542, 581
MwoI	GCNNNNNNNGC	3 cut(s)	260, 366, 590
NdeII	GATC	2 cut(s)	106, 727
NlaIII	CATG	6 cut(s)	26, 37, 556, 589, 783, 792
NlaIV	GGNNCC	2 cut(s)	401, 786
NsbI	TGCGCA	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	86, 127, 290, 390
PkrI	GCNGC	2 cut(s)	16, 172
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PpuMI	RGGWCCY	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	540, 579
PspGI	CCWGG	2 cut(s)	540, 579
PspN4I	GGNNCC	2 cut(s)	401, 786
PspPI	GGNCC	3 cut(s)	281, 399, 754
PspPPI	RGGWCCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	45, 102
SatI	GCNGC	2 cut(s)	15, 171
Sau3AI	GATC	2 cut(s)	106, 727
Sau96I	GGNCC	3 cut(s)	281, 399, 754
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	2 cut(s)	542, 581
SduI	GDGCHC	1 cut(s)	787
SexAI	ACCWGGT	1 cut(s)	540
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	5 cut(s)	47, 273, 298, 714, 775
SsiI	CCGC	2 cut(s)	81, 678
SspMI	CTAG	2 cut(s)	315, 671
StyD4I	CCNGG	2 cut(s)	540, 579
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	405, 460, 739
TasI	AATT	5 cut(s)	47, 273, 298, 714, 775
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	4 cut(s)	86, 127, 290, 390
Tru1I	TTAA	2 cut(s)	45, 102
Tru9I	TTAA	2 cut(s)	45, 102
TscAI	CASTG	1 cut(s)	737
TseI	GCWGC	2 cut(s)	14, 170
TspDTI	ATGAA	5 cut(s)	17, 222, 325, 620, 768
TspRI	CASTG	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	761
XapI	RAATTY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	315, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.