Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34306139 .. 34307127

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1250600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCAATCATCTGCGGAGGAGATTGGCCCTTGTTGAGGGTCATGAGAGGAATATTTGAGGGTGGTCTTGATAATGTGGGCAAGAATATTGAGGAAGATTATGAAGAGGTTGCAGATGCTGATTGGGGAGAGGAGTTGGATCTTGTTGACCAATGCCCGTTCTTCTGTGTTTGTTGCCCCAACTCCAGGTATGCCTGTAAGCCAAACCTGGTCCCCAGAAATCATCTCTTTGTTGCTGAACATGCTACTGCTGGGAATTTCGATATTGCAATGCGTTTGTTGAGCAGGGAGCTGGGTGTAAAGAACTTTGATCCCTTGAGACAATTATTTCTCGATTTACACATGGGCAGTCATATGTATCTACATGCCTTCTCGGCAGCTCATGTGCTCACCGTGGCCATTGAGAGGGGATGGAGTGAATCAGCTACACCTAATGTTAGGGGTCCTCCTGCTCTTGTATTTAAATTCTCAGAGCTAGAAGAGAAGCTTAAGGCGGGTTACAAGGCCACAACGCAAGGGAAATTTGCTGATGCTTTACGTCTTCTCCTTGGTATTCTGTATACTATTCCTCTGATCGTAGTTGATTCAAAGAGAGAGGTTGATGAAGTAAAAGAATTAATTATCATTGTAAAGGAGTATGTTCTAGGTTTGAAGATGGAGATTAAGAGGAAGGAACTTAAAGGCGATCCGATTCGCCAACAGGAGCTAGCTGCTTACTTCACCCACTGCAACCTTCAGATGCCTCACTTGAGACTTGCATTACTAAATGCCATGAGTGTTTGCTATAAGGCTGGTAATCTCAACACGGCAGCTAACTTTGCCAGGCGACTTTTGGAAACCAACCCCACCATTGAAAACCATGCAAAGACTGCAAGACAAATCCTGCTAAACTATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

300

Amino Acids

33.74

Weight (kDa)

6.16

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COPI_C	PF06957	74 - 295	3.7e-92	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	560
AciI	CCGC	2 cut(s)	15, 494
AclWI	GGATC	3 cut(s)	147, 305, 680
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	3 cut(s)	256, 464, 521
AcuI	CTGAAG	1 cut(s)	719
AfiI	CCNNNNNNNGG	3 cut(s)	36, 186, 405
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	3 cut(s)	588, 652, 854
AjnI	CCWGG	3 cut(s)	185, 207, 821
AluBI	AGCT	8 cut(s)	292, 380, 425, 475, 487, 706, 710, 812
AluI	AGCT	8 cut(s)	292, 380, 425, 475, 487, 706, 710, 812
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	313, 745
AlwI	GGATC	3 cut(s)	147, 305, 680
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	3 cut(s)	26, 396, 504
ApeKI	GCWGC	3 cut(s)	377, 710, 809
ApoI	RAATTY	3 cut(s)	256, 464, 521
AseI	ATTAAT	1 cut(s)	617
AspS9I	GGNCC	3 cut(s)	27, 211, 443
AsuHPI	GGTGA	2 cut(s)	382, 712
AsuNHI	GCTAGC	1 cut(s)	706
AvaII	GGWCC	2 cut(s)	211, 443
BalI	TGGCCA	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	389, 697, 821
BccI	CCATC	2 cut(s)	405, 649
BceAI	ACGGC	1 cut(s)	822
BciT130I	CCWGG	3 cut(s)	187, 209, 823
BcoDI	GTCTC	2 cut(s)	313, 745
BfaI	CTAG	3 cut(s)	476, 644, 707
BfrI	CTTAAG	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	378, 711, 810
BlsI	GCNGC	3 cut(s)	379, 712, 811
Bme1390I	CCNGG	3 cut(s)	187, 209, 823
Bme18I	GGWCC	2 cut(s)	211, 443
BmgT120I	GGNCC	3 cut(s)	27, 211, 443
BmiI	GGNNCC	2 cut(s)	213, 444
BmrFI	CCNGG	3 cut(s)	187, 209, 823
BmsI	GCATC	3 cut(s)	106, 520, 729
BmtI	GCTAGC	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	169
BpuEI	CTTGAG	2 cut(s)	337, 769
BsaJI	CCNNGG	2 cut(s)	393, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 186, 405
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	187, 209, 823
BseDI	CCNNGG	2 cut(s)	393, 547
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	3 cut(s)	36, 186, 405
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	483
BseRI	GAGGAG	2 cut(s)	33, 146
BseXI	GCAGC	3 cut(s)	389, 697, 821
BseYI	CCCAGC	2 cut(s)	251, 292
BshFI	GGCC	3 cut(s)	28, 398, 506
BsiHKAI	GWGCWC	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	36, 186, 405
BsmAI	GTCTC	2 cut(s)	313, 745
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	28, 398, 506
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	139, 310, 573, 685
BspACI	CCGC	2 cut(s)	15, 494
BspANI	GGCC	3 cut(s)	28, 398, 506
BspCNI	CTCAG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	213, 444
BspOI	GCTAGC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	147, 305, 680
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	393, 547
BssMI	GATC	4 cut(s)	139, 310, 573, 685
BssNAI	GTATAC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	547
Bst1107I	GTATAC	1 cut(s)	561
Bst2UI	CCWGG	3 cut(s)	187, 209, 823
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	99, 474
BstAFI	CTTAAG	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	1 cut(s)	469
BstDSI	CCRYGG	1 cut(s)	393
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	4 cut(s)	142, 313, 576, 688
BstMAI	GTCTC	2 cut(s)	313, 745
BstMBI	GATC	4 cut(s)	139, 310, 573, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 374, 818, 869
BstNI	CCWGG	3 cut(s)	187, 209, 823
BstNSI	RCATGY	2 cut(s)	245, 368
BstSCI	CCNGG	3 cut(s)	185, 207, 821
BstV1I	GCAGC	3 cut(s)	389, 697, 821
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	561
BsuRI	GGCC	3 cut(s)	28, 398, 506
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	708
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	27, 211, 443
CsiI	ACCWGGT	1 cut(s)	207
CviAII	CATG	7 cut(s)	43, 242, 343, 365, 383, 772, 860
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	4 cut(s)	141, 312, 575, 687
DpnII	GATC	4 cut(s)	139, 310, 573, 685
DraI	TTTAAA	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	99, 474
EarI	CTCTTC	2 cut(s)	99, 474
Eco130I	CCWWGG	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	211, 443
Eco57I	CTGAAG	1 cut(s)	719
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	3 cut(s)	185, 207, 821
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	7 cut(s)	46, 245, 346, 368, 386, 775, 863
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	7 cut(s)	42, 241, 342, 364, 382, 771, 859
FauI	CCCGC	1 cut(s)	487
FauNDI	CATATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	3 cut(s)	378, 711, 810
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	3 cut(s)	378, 711, 810
FspBI	CTAG	3 cut(s)	476, 644, 707
GluI	GCNGC	3 cut(s)	378, 711, 810
GsaI	CCCAGC	2 cut(s)	255, 296
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	28, 398, 506
Hin1II	CATG	7 cut(s)	46, 245, 346, 368, 386, 775, 863
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	419, 584, 691
HphI	GGTGA	2 cut(s)	382, 712
Hpy166II	GTNNAC	2 cut(s)	148, 561
Hpy188I	TCNGA	4 cut(s)	472, 573, 690, 738
Hpy188III	TCNNGA	3 cut(s)	43, 68, 332
Hpy8I	GTNNAC	2 cut(s)	148, 561
HpyAV	CCTTC	3 cut(s)	379, 664, 743
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	6 cut(s)	113, 269, 729, 758, 863, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 374, 818, 869
HpyF3I	CTNAG	1 cut(s)	469
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	7 cut(s)	46, 245, 346, 368, 386, 775, 863
Kzo9I	GATC	4 cut(s)	139, 310, 573, 685
LmnI	GCTCC	2 cut(s)	289, 703
Lsp1109I	GCAGC	3 cut(s)	389, 697, 821
LweI	GCATC	3 cut(s)	106, 520, 729
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	3 cut(s)	476, 644, 707
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	4 cut(s)	141, 312, 575, 687
MboI	GATC	4 cut(s)	139, 310, 573, 685
MboII	GAAGA	6 cut(s)	107, 116, 154, 491, 533, 664
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	6 cut(s)	256, 323, 464, 521, 614, 618
MluNI	TGGCCA	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	5 cut(s)	462, 489, 617, 663, 678
Msp20I	TGGCCA	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	488
MspR9I	CCNGG	3 cut(s)	187, 209, 823
MvaI	CCWGG	3 cut(s)	187, 209, 823
MwoI	GCNNNNNNNGC	4 cut(s)	242, 374, 818, 869
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	4 cut(s)	139, 310, 573, 685
NheI	GCTAGC	1 cut(s)	706
NlaIII	CATG	7 cut(s)	46, 245, 346, 368, 386, 775, 863
NlaIV	GGNNCC	2 cut(s)	213, 444
NmeAIII	GCCGAG	1 cut(s)	353
NspI	RCATGY	2 cut(s)	245, 368
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	419, 584, 691
PkrI	GCNGC	3 cut(s)	379, 712, 811
PpuMI	RGGWCCY	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	3 cut(s)	185, 207, 821
PspFI	CCCAGC	2 cut(s)	251, 292
PspGI	CCWGG	3 cut(s)	185, 207, 821
PspN4I	GGNNCC	2 cut(s)	213, 444
PspPI	GGNCC	3 cut(s)	27, 211, 443
PspPPI	RGGWCCY	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	462, 489, 617, 663, 678
SatI	GCNGC	3 cut(s)	378, 711, 810
Sau3AI	GATC	4 cut(s)	139, 310, 573, 685
Sau96I	GGNCC	3 cut(s)	27, 211, 443
ScrFI	CCNGG	3 cut(s)	187, 209, 823
SduI	GDGCHC	1 cut(s)	390
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	3 cut(s)	106, 520, 729
SinI	GGWCC	2 cut(s)	211, 443
SmiI	ATTTAAAT	1 cut(s)	463
SmlI	CTYRAG	3 cut(s)	316, 488, 748
SmoI	CTYRAG	3 cut(s)	316, 488, 748
Sse9I	AATT	6 cut(s)	256, 323, 464, 521, 614, 618
SsiI	CCGC	2 cut(s)	15, 494
SspI	AATATT	2 cut(s)	54, 88
SspMI	CTAG	3 cut(s)	476, 644, 707
StyD4I	CCNGG	3 cut(s)	185, 207, 821
StyI	CCWWGG	1 cut(s)	547
SwaI	ATTTAAAT	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	2 cut(s)	261, 333
TasI	AATT	6 cut(s)	256, 323, 464, 521, 614, 618
TfiI	GAWTC	3 cut(s)	419, 584, 691
Tru1I	TTAA	5 cut(s)	462, 489, 617, 663, 678
Tru9I	TTAA	5 cut(s)	462, 489, 617, 663, 678
TscAI	CASTG	1 cut(s)	731
TseI	GCWGC	3 cut(s)	377, 710, 809
TspDTI	ATGAA	2 cut(s)	117, 618
TspRI	CASTG	1 cut(s)	731
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	211, 443
VspI	ATTAAT	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	3 cut(s)	256, 464, 521
XceI	RCATGY	2 cut(s)	245, 368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XmiI	GTMKAC	1 cut(s)	560
XspI	CTAG	3 cut(s)	476, 644, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.