Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

5981785 .. 5987779

Gene Structure 5995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3660 bp

ATGCTGACGAAATTCGAGACCAAGAGTAACCGTGTGAAGGGGCTGAGCTTCCACAGCAAGAGGCCATGGATCTTGGCGAGTCTTCACAGCGGTGTGATCCAGCTCTGGGATTACCGCATGGGCACTCTCATCGACCGGTTTGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACTCCTCTCAGCCTCTTTTCGTCTCTGGCGGGGATGATTACAAGATCAAGGTGTGGAATTATAAGCTGCATAGGTGCTTGTTTACTCTTCTTGGACACCTTGATTACATCCGTACTGTTCAATTCCATCATGAGTACCCTTGGATTGTGAGTGCCAGTGATGACCAGACCATCAGAATTTGGAATTGGCAGTCCCGGACCTGTATTTCTGTGCTCACTGGGCACAACCATTACGTCATGTGTGCCTTGTTCCATCCCAAGGAGGATCTTGTTGTCTCAGCATCATTGGATCAAACTGTACGTGTTTGGGATATTGGTGCACTTAGGAAGAAAACAGTTGCGCCTGCAGATGACATCCTACGACTGAGTCAAATGAATGCAGATTTCTTTGGTGGAGTTGACGCTGTTGTGAAGTATGTCTTGGAAGGTCATGACCGGGGTGTTAATTGGGCCTCGTTCCATCCTACACTCCCTCTGATTGTGTCTGGAGCTGATGATCGGCAAGTGAAACTTTGGCGAATGAATGATACAAAGGCTTGGGAGGTGGACACTTTAAGGGGGCACATGAACAATGTATCATGTGTTTTATTCCATTCAAGGCAGGATATTATTGTTTCGAATTCAGAGGATAGGAGTATCCGAGTCTGGGATGCCACAAAAAGAACTGGTCTTCAGACATTTCGCAGAGAGCATGATAGGTTCTGGATTCTTTCAGCACACCCTGAAATGAACCTTTTGGCTGCTGGTCATGATAGTGGCATGATTGTCTTTAAATTGGAGAGAGAACGCCCTGCCTTTTCTGTCAGTGCTGATTCTATGTACTATGTCAAAGATCGGTTTCTCCGCTTTTACGAGTTCACAAACCAGAGAGACACTCAGGTTATCCCTATTCGAAGGCCTGGTTCTTCCACCTTGAATCAAGGGGCTAAAACTCTATCTTATAGCCCTACAGAAAATGCTGTTTTGATCTGTTCTGATACTGAAGGGGGTTCCTATGAACTATACATAATTCCCAAAGAAAGCTATGGTCGGGGTGATACTGCGCAGGAGGCAAAAAGAGGAGTTGGAGGGCCAGCTGTTTTTGTGGCTCGAAATAGATTTGCTGTGCTTGAAAAAAGCACCAACCAAGTCTTAGTTAAAAATCTGAAAAATGAGATTGTCAAGAAGAGTGCCCTTCCTTTTGTTGCTGATGCAATATTTTATGCTGGAACTGGAAACTTGCTCTGCAGGGCAGAGGATAGAGTTGTCATTTTTGACCTGCAGCAGAGAATTATTCTCGGGGAGCTTCAAACTCCTTTTGTGAGGTACGTTGTATGGTCAAATGACATGGAGAACATTGCTTTACTCAGCAAACATTCAATTGTAATAGCCAATAAGAAGCTTGTTCATCAATGCACTCTACATGAGACCATTCGTGTAAAGAGCGGAGCTTGGGATGACCATGGTGTCTTCATATATACAACTTTGAACCACATCAAATACTGTCTTCCTAATGGGGACAGTGGAATCATCAGGACGCTCGATGTTCCTGTTTATATTACAAAGGTGTATGGAAGCACCATACATTGCTTGGATCGAGATGGGAAGAACTGTGCAATTGTTGTTGATGCAACAGAATATGTTTTTAAGTTGTCCTTACTGAAGAAGAGGTATGACCAGGTTATGAGCATGATTAAAAGCTCTGAGCTCTGTGGCCAGGCCATGATTGCATATCTACAACAAAAAGGTTTCCCTGAGGTTGCCCTTCATTTTGTGAAGGATGAGAGGACTCGCTTCAACTTGGCACTTGGAAGTGGAAACATACAGATTGCTGTTGCTTCTGCCAAGGAAATTGATGAGAAAGATCACTGGTATCGATTGGGAGTTGAGGCTCTTCGTCAAGGTAATTCAGAAATTGTAGAATATGCATATCAGAGGACAAAGAATTTTGAGAGGCTATCATTCTTATATCTTGTTACCGGAAACTTGGATAAGTTGACCAAAATGCTGAAAATTGCTGAAGTGAAGAATGATGTAATGGGCCAGTTCCACAATGCTCTATATTTGGGTGACATCGGAGAGCGTGTTAAGATCTTGGAGAATGCTGGACATTTACCCCTTGCATATGCTACAGCTAAGGCTCATGGCCTCCAAGATATTGCTGAACGGTTGGCAGGTGAGCTGGGAGATAATGTTCCTATTTTACCTGGGGGAAAGTCTCCATCTCTTCTAGCACCTCCTACCCCAATCATCTGTGGTGGAGATTGGCCCTTGTTGAATGTTATGAAAGGAATTTTCGAGGGTGGTCTCGAGAATGTGGACATACCTGATGAGGGAGAATATGTGGATACTACAGATGGTGTTAATTGGGGAGGAGAAATTTTGGATATTGTTGATGTGGAAAACATTCAGAATGGTGACATTAGTGCGGTGCTGGGAGATGATGAAGCACACGAGGAAAATGAAGAGGGAGGGTGGGACCTTGAGGATCTTGAACTTCCACCTGAGCTTGATACTCCCAAAATTGCCAACAATGCCCGGGCTTCTGTATTTGTTGCCCCAACTCCAGGTATTCCTGTTAGTCAAATTTGGAGCCAAAAATCTTCTCTTGCTGCTGAACATGCAGCAGCTGGGAATTTTGATATTGCAATGCGATTGCTGAGCAGGCAGCTGGGAATAAAGAACTTTGCACCCTTGAAACAATTGTTTCTTGACATGCACACGGGGAGTCATTCGTATTTACGTGCCTTATCAACAGCTCCTGTAATCTCCCTGGCTATTGAGAGGGGATGGAGTGAATCAGTAAGCCCTAATGGTAGGAGCCCTCCTGCATTGGTTTTTAAATTCTCAGACCTGGAAGAGAAGCTAAAGGCTGGTTACAGGGCCACAACTACAGGGAAATTTACTGAGGCTGTACGACTTCTACTTGGTATTCTGCACACCATTCCTCTGGTCGTAGTTGATACAAGGAGAGAGGTTGATGAAGTAAAGGAATTAATTATCATTATAAGGGAATATGTTCTGGGTTTGAAAATGGAGCTCAAGAGAAGGGAAATTAAGGATAATCCAGTTCGTCAACAGGAGCTAGCAGCTTACTTCACCCACTGTAACCTCCAGATGCCTCACTTGAGACTTGCATTACTGAATGCCATGACTGTTTGCTACAAGGCTGGTAATCTCAACACAGCTGGTAACTTTGCCAGGCGACTTTTGGAGACCAATCCCACAAATGAAAATCAAGCAAAGACTGCACGGCAAGTCCTGCAAGCTGCTGAGAAGAACATGAATGATGCAACCCCGCTCAATTATGATTTCAGAAATCCATTTGTGGTTTGTGGGGCAACATTTGTACCTATTTACCGAGGACAGAAGGATGTGTCATGCCCATACTGCAGTTCTCGGTTTGTTCCTACTCAGGAAGGGCAGCTCTGTACTGTTTGTGATCTTGCAGTTGTTGGATCTGATGCATCTGGGTTACTCTGCTCTCCGTCCCAGAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

1220

Amino Acids

136.75

Weight (kDa)

6.63

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	2 - 79	9.1e-09	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	3 - 89	8.5e-10	WDR5 beta-propeller domain
WDR55	PF24796	3 - 166	4e-12	WDR55
Beta-prop_WDR3_1st	PF25173	4 - 164	1.4e-31	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	4 - 162	3.4e-15	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	6 - 104	1.4e-10	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	13 - 140	8.2e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	17 - 83	9.5e-06	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	26 - 122	3.1e-07	G protein beta WD-40 repeat protein
WD40	PF00400	42 - 79	2.9e-06	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	42 - 130	6.2e-10	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	49 - 165	5.8e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	50 - 166	6.7e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	50 - 166	1.5e-07	TEP-1 second beta-propeller
WD40_Prp19	PF24814	60 - 167	7e-20	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	75 - 166	1.3e-25	WDR5 beta-propeller domain
WD40	PF00400	84 - 121	3e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	88 - 163	1.7e-08	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	91 - 162	1.8e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	95 - 166	3.2e-12	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	108 - 167	2.2e-12	THOC3 beta-propeller domain
WD40	PF00400	126 - 163	6.4e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	191 - 305	3.7e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	195 - 314	4.6e-17	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	196 - 317	3.5e-18	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	196 - 308	2.1e-20	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	197 - 292	6.6e-07	TEP-1 second beta-propeller
WD40	PF00400	198 - 231	3e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	202 - 311	4.9e-09	WDR3 second beta-propeller domain
WDR55	PF24796	207 - 315	8.4e-09	WDR55
Beta-prop_THOC3	PF25174	208 - 316	2.8e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	211 - 286	6.4e-09	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	212 - 319	1.6e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	223 - 321	5.3e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	241 - 276	8.4e-07	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	340 - 584	7.7e-65	COPA/B second beta-propeller
TPR_COPA_B	PF23953	625 - 771	7.6e-19	COPA/B TPR domain
COPI_C	PF06957	815 - 1218	3.3e-166	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	240, 3164
AarI	CACCTGC	1 cut(s)	2321
AasI	GACNNNNNNGTC	2 cut(s)	158, 1622
Acc16I	TGCGCA	1 cut(s)	1221
Acc36I	ACCTGC	2 cut(s)	1443, 2321
AccBSI	CCGCTC	2 cut(s)	1602, 3457
AccII	CGCG	1 cut(s)	165
AciI	CCGC	9 cut(s)	90, 115, 163, 165, 207, 1021, 1602, 2585, 3455
AclWI	GGATC	7 cut(s)	77, 91, 450, 474, 1758, 2652, 3622
AcoI	YGGCCR	1 cut(s)	1870
AcuI	CTGAAG	4 cut(s)	833, 1179, 1838, 2196
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	8 cut(s)	292, 314, 477, 998, 1484, 3072, 3507, 3589
AfiI	CCNNNNNNNGG	7 cut(s)	37, 106, 164, 436, 823, 2489, 2723
AflIII	ACRYGT	1 cut(s)	478
AgeI	ACCGGT	1 cut(s)	135
AjnI	CCWGG	8 cut(s)	1075, 1833, 1872, 2362, 2722, 2928, 3009, 3356
AjuI	GAANNNNNNNTTGG	4 cut(s)	346, 378, 581, 613
AleI	CACNNNNGTG	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	2334, 2366
Alw21I	GWGCWC	5 cut(s)	150, 393, 499, 1866, 3198
Alw26I	GTCTC	9 cut(s)	11, 205, 457, 1041, 1577, 2379, 2468, 3280, 3365
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	7 cut(s)	77, 91, 450, 474, 1758, 2652, 3622
AlwNI	CAGNNNCTG	2 cut(s)	2786, 2918
Ama87I	CYCGRG	3 cut(s)	1454, 2465, 2694
ApaLI	GTGCAC	1 cut(s)	495
AseI	ATTAAT	1 cut(s)	3152
AsiGI	ACCGGT	1 cut(s)	135
Asp700I	GAANNNNTTC	2 cut(s)	2562, 3174
AspLEI	GCGC	2 cut(s)	520, 1222
AspS9I	GGNCC	8 cut(s)	155, 375, 627, 1247, 2197, 2424, 2635, 3039
AsuC2I	CCSGG	4 cut(s)	373, 614, 2695, 2696
AsuHPI	GGTGA	5 cut(s)	1223, 2237, 2345, 2585, 3247
AsuII	TTCGAA	2 cut(s)	794, 1069
AsuNHI	GCTAGC	1 cut(s)	3241
AvaI	CYCGRG	3 cut(s)	1454, 2465, 2694
AvaII	GGWCC	2 cut(s)	375, 2635
AxyI	CCTNAGG	1 cut(s)	1911
BaeGI	GKGCMC	5 cut(s)	125, 402, 499, 741, 1351
BaeI	ACNNNNGTAYC	2 cut(s)	3489, 3522
BalI	TGGCCA	1 cut(s)	1872
BanII	GRGCYC	3 cut(s)	1866, 2981, 3198
BauI	CACGAG	1 cut(s)	2609
BbsI	GAAGAC	4 cut(s)	74, 839, 1618, 1655
Bbv12I	GWGCWC	5 cut(s)	150, 393, 499, 1866, 3198
BccI	CCATC	8 cut(s)	312, 356, 438, 645, 1751, 2386, 2507, 2940
BceAI	ACGGC	2 cut(s)	169, 3425
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	8 cut(s)	1077, 1835, 1874, 2364, 2724, 2930, 3011, 3358
BciVI	GTATCC	2 cut(s)	824, 2497
BcnI	CCSGG	4 cut(s)	373, 614, 2695, 2696
BcoDI	GTCTC	9 cut(s)	11, 205, 457, 1041, 1577, 2379, 2468, 3280, 3365
BfaI	CTAG	2 cut(s)	2387, 3242
BfmI	CTRYAG	8 cut(s)	522, 1125, 1402, 1436, 2286, 2508, 3048, 3547
BfuAI	ACCTGC	2 cut(s)	1443, 2321
BfuI	GTATCC	2 cut(s)	824, 2497
BglII	AGATCT	1 cut(s)	2247
BlpI	GCTNAGC	2 cut(s)	44, 2816
Bme18I	GGWCC	2 cut(s)	375, 2635
BmeT110I	CYCGRG	3 cut(s)	1454, 2465, 2694
BmgT120I	GGNCC	8 cut(s)	155, 375, 627, 1247, 2197, 2424, 2635, 3039
BmiI	GGNNCC	5 cut(s)	157, 1168, 2636, 2750, 2978
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	8 cut(s)	467, 817, 1357, 1774, 3264, 3436, 3610, 3632
BmtI	GCTAGC	1 cut(s)	3245
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	4 cut(s)	74, 839, 1618, 1655
BplI	GAGNNNNNCTC	2 cut(s)	1036, 1068
BpmI	CTGGAG	3 cut(s)	684, 2706, 3254
Bpu10I	CCTNAGC	2 cut(s)	2292, 2661
Bpu1102I	GCTNAGC	2 cut(s)	44, 2816
Bpu14I	TTCGAA	2 cut(s)	794, 1069
BpuEI	CTTGAG	3 cut(s)	2660, 3182, 3304
BpuMI	CCSGG	4 cut(s)	373, 614, 2695, 2696
Bsa29I	ATCGAT	1 cut(s)	2032
BsaAI	YACGTR	2 cut(s)	479, 2900
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	4 cut(s)	11, 1577, 2468, 3365
BsaWI	WCCGGW	2 cut(s)	135, 2135
BsaXI	ACNNNNNCTCC	6 cut(s)	2226, 2256, 2334, 2364, 2484, 2514
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 106, 164, 436, 823, 2489, 2723
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	7 cut(s)	333, 400, 847, 1393, 2030, 2200, 3224
Bse21I	CCTNAGG	1 cut(s)	1911
Bse3DI	GCAATG	3 cut(s)	1512, 1741, 2811
BseBI	CCWGG	8 cut(s)	1077, 1835, 1874, 2364, 2724, 2930, 3011, 3358
BseCI	ATCGAT	1 cut(s)	2032
BseLI	CCNNNNNNNGG	7 cut(s)	37, 106, 164, 436, 823, 2489, 2723
BseMI	GCAATG	3 cut(s)	1512, 1741, 2811
BseNI	ACTGG	7 cut(s)	333, 400, 847, 1393, 2030, 2200, 3224
BseRI	GAGGAG	3 cut(s)	172, 1251, 2544
BseSI	GKGCMC	5 cut(s)	125, 402, 499, 741, 1351
BseYI	CCCAGC	4 cut(s)	2338, 2590, 2786, 2827
BsgI	GTGCAG	2 cut(s)	3077, 3390
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	136
BshTI	ACCGGT	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	2032
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	5 cut(s)	150, 393, 499, 1866, 3198
BsiHKCI	CYCGRG	3 cut(s)	1454, 2465, 2694
BsiSI	CCGG	5 cut(s)	136, 373, 613, 2136, 2695
BslFI	GGGAC	4 cut(s)	355, 1688, 2648, 3631
BslI	CCNNNNNNNGG	7 cut(s)	37, 106, 164, 436, 823, 2489, 2723
BsmAI	GTCTC	9 cut(s)	11, 205, 457, 1041, 1577, 2379, 2468, 3280, 3365
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	4 cut(s)	355, 1688, 2648, 3631
BsmI	GAATGC	3 cut(s)	559, 2263, 3307
Bso31I	GGTCTC	4 cut(s)	11, 1577, 2468, 3365
BsoBI	CYCGRG	3 cut(s)	1454, 2465, 2694
Bsp119I	TTCGAA	2 cut(s)	794, 1069
Bsp1720I	GCTNAGC	2 cut(s)	44, 2816
Bsp19I	CCATGG	2 cut(s)	65, 1618
BspACI	CCGC	9 cut(s)	90, 115, 163, 165, 207, 1021, 1602, 2585, 3455
BspDI	ATCGAT	1 cut(s)	2032
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	3 cut(s)	307, 607, 925
BspLI	GGNNCC	5 cut(s)	157, 1168, 2636, 2750, 2978
BspMAI	CTGCAG	4 cut(s)	526, 1406, 1440, 3551
BspMI	ACCTGC	2 cut(s)	1443, 2321
BspOI	GCTAGC	1 cut(s)	3245
BspPI	GGATC	7 cut(s)	77, 91, 450, 474, 1758, 2652, 3622
BspQI	GCTCTTC	1 cut(s)	2055
BspT104I	TTCGAA	2 cut(s)	794, 1069
BspTNI	GGTCTC	4 cut(s)	11, 1577, 2468, 3365
BsrBI	CCGCTC	2 cut(s)	1602, 3457
BsrDI	GCAATG	3 cut(s)	1512, 1741, 2811
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	7 cut(s)	333, 400, 847, 1393, 2030, 2200, 3224
BssAI	RCCGGY	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	2609
BssT1I	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2001
Bst2BI	CACGAG	1 cut(s)	2609
Bst2UI	CCWGG	8 cut(s)	1077, 1835, 1874, 2364, 2724, 2930, 3011, 3358
Bst6I	CTCTTC	7 cut(s)	270, 1337, 1817, 2055, 2388, 2616, 3009
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	3404, 3418
BstBAI	YACGTR	2 cut(s)	479, 2900
BstBI	TTCGAA	2 cut(s)	794, 1069
BstC8I	GCNNGC	5 cut(s)	522, 1251, 2822, 3243, 3423
BstDSI	CCRYGG	3 cut(s)	65, 163, 1618
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	520, 1222
BstMAI	GTCTC	9 cut(s)	11, 205, 457, 1041, 1577, 2379, 2468, 3280, 3365
BstMCI	CGRYCG	1 cut(s)	136
BstNI	CCWGG	8 cut(s)	1077, 1835, 1874, 2364, 2724, 2930, 3011, 3358
BstNSI	RCATGY	2 cut(s)	2780, 2875
BstSFI	CTRYAG	8 cut(s)	522, 1125, 1402, 1436, 2286, 2508, 3048, 3547
BstSLI	GKGCMC	5 cut(s)	125, 402, 499, 741, 1351
BstUI	CGCG	1 cut(s)	165
BstV2I	GAAGAC	4 cut(s)	74, 839, 1618, 1655
BstX2I	RGATCY	5 cut(s)	69, 442, 2247, 2644, 3614
BstXI	CCANNNNNNTGG	1 cut(s)	3106
BstYI	RGATCY	5 cut(s)	69, 442, 2247, 2644, 3614
Bsu15I	ATCGAT	1 cut(s)	2032
Bsu36I	CCTNAGG	1 cut(s)	1911
BsuI	GTATCC	2 cut(s)	824, 2497
BsuTUI	ATCGAT	1 cut(s)	2032
BtgI	CCRYGG	3 cut(s)	65, 163, 1618
BtsIMutI	CAGTG	6 cut(s)	340, 393, 988, 1684, 2023, 3259
BveI	ACCTGC	2 cut(s)	1443, 2321
Cac8I	GCNNGC	5 cut(s)	522, 1251, 2822, 3243, 3423
CaiI	CAGNNNCTG	2 cut(s)	2786, 2918
CciI	TCATGA	3 cut(s)	307, 607, 925
CfoI	GCGC	2 cut(s)	520, 1222
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	8 cut(s)	155, 375, 627, 1247, 2197, 2424, 2635, 3039
Cfr42I	CCGCGG	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	2694
ClaI	ATCGAT	1 cut(s)	2032
CseI	GACGC	3 cut(s)	157, 587, 1702
CsiI	ACCWGGT	1 cut(s)	1833
Csp6I	GTAC	8 cut(s)	291, 313, 476, 997, 1483, 3071, 3506, 3588
CspAI	ACCGGT	1 cut(s)	135
CviQI	GTAC	8 cut(s)	291, 313, 476, 997, 1483, 3071, 3506, 3588
DraI	TTTAAA	2 cut(s)	949, 2998
DrdI	GACNNNNNNGTC	2 cut(s)	158, 1622
DseDI	GACNNNNNNGTC	2 cut(s)	158, 1622
EaeI	YGGCCR	1 cut(s)	1870
Eam1104I	CTCTTC	7 cut(s)	270, 1337, 1817, 2055, 2388, 2616, 3009
EarI	CTCTTC	7 cut(s)	270, 1337, 1817, 2055, 2388, 2616, 3009
Ecl136II	GAGCTC	2 cut(s)	1864, 3196
Eco130I	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2001
Eco147I	AGGCCT	1 cut(s)	1075
Eco24I	GRGCYC	3 cut(s)	1866, 2981, 3198
Eco31I	GGTCTC	4 cut(s)	11, 1577, 2468, 3365
Eco47I	GGWCC	2 cut(s)	375, 2635
Eco53kI	GAGCTC	2 cut(s)	1864, 3196
Eco57I	CTGAAG	4 cut(s)	833, 1179, 1838, 2196
Eco81I	CCTNAGG	1 cut(s)	1911
Eco88I	CYCGRG	3 cut(s)	1454, 2465, 2694
EcoICRI	GAGCTC	2 cut(s)	1864, 3196
EcoO109I	RGGNCCY	1 cut(s)	2635
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	8 cut(s)	1075, 1833, 1872, 2362, 2722, 2928, 3009, 3356
EcoT14I	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2001
EcoT22I	ATGCAT	2 cut(s)	2086, 3625
EcoT38I	GRGCYC	3 cut(s)	1866, 2981, 3198
ErhI	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2001
Esp3I	CGTCTC	1 cut(s)	205
FalI	AAGNNNNNCTT	6 cut(s)	581, 613, 672, 704, 1796, 1828
FaqI	GGGAC	4 cut(s)	355, 1688, 2648, 3631
FauI	CCCGC	2 cut(s)	200, 3462
FauNDI	CATATG	1 cut(s)	2281
FriOI	GRGCYC	3 cut(s)	1866, 2981, 3198
FspBI	CTAG	2 cut(s)	2387, 3242
FspI	TGCGCA	1 cut(s)	1221
GlaI	GCGC	2 cut(s)	519, 1221
GsaI	CCCAGC	4 cut(s)	2342, 2594, 2790, 2831
GsuI	CTGGAG	3 cut(s)	684, 2706, 3254
HapII	CCGG	5 cut(s)	136, 373, 613, 2136, 2695
HgaI	GACGC	3 cut(s)	157, 587, 1702
HhaI	GCGC	2 cut(s)	520, 1222
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	2 cut(s)	518, 1220
HinP1I	GCGC	2 cut(s)	518, 1220
HincII	GTYRAC	3 cut(s)	577, 2154, 3233
HindII	GTYRAC	3 cut(s)	577, 2154, 3233
HindIII	AAGCTT	1 cut(s)	1556
HpaII	CCGG	5 cut(s)	136, 373, 613, 2136, 2695
HphI	GGTGA	5 cut(s)	1223, 2237, 2345, 2585, 3247
Hpy166II	GTNNAC	8 cut(s)	261, 497, 577, 724, 1035, 2154, 2476, 3233
Hpy8I	GTNNAC	8 cut(s)	261, 497, 577, 724, 1035, 2154, 2476, 3233
Hpy99I	CGWCG	1 cut(s)	155
HpyCH4IV	ACGT	4 cut(s)	411, 478, 1485, 2899
HpySE526I	ACGT	4 cut(s)	411, 478, 1485, 2899
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	2 cut(s)	518, 1220
KspI	CCGCGG	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	2055
LmnI	GCTCC	8 cut(s)	665, 1459, 1604, 2748, 2920, 2976, 3193, 3238
LweI	GCATC	8 cut(s)	467, 817, 1357, 1774, 3264, 3436, 3610, 3632
MabI	ACCWGGT	1 cut(s)	1833
MaeI	CTAG	2 cut(s)	2387, 3242
MaeII	ACGT	4 cut(s)	411, 478, 1485, 2899
MaeIII	GTNAC	8 cut(s)	26, 2131, 2225, 2573, 3032, 3263, 3347, 3630
MbiI	CCGCTC	2 cut(s)	1602, 3457
MfeI	CAATTG	3 cut(s)	1536, 1773, 2858
MflI	RGATCY	5 cut(s)	69, 442, 2247, 2644, 3614
MlsI	TGGCCA	1 cut(s)	1872
MluNI	TGGCCA	1 cut(s)	1872
MlyI	GAGTC	5 cut(s)	88, 553, 828, 1939, 2893
MmeI	TCCRAC	2 cut(s)	1222, 3592
Mox20I	TGGCCA	1 cut(s)	1872
Mph1103I	ATGCAT	2 cut(s)	2086, 3625
MroXI	GAANNNNTTC	2 cut(s)	2562, 3174
MscI	TGGCCA	1 cut(s)	1872
MslI	CAYNNNNRTG	2 cut(s)	90, 930
Msp20I	TGGCCA	1 cut(s)	1872
MspA1I	CMGCKG	6 cut(s)	90, 165, 1253, 2786, 2827, 3344
MspI	CCGG	5 cut(s)	136, 373, 613, 2136, 2695
MunI	CAATTG	3 cut(s)	1536, 1773, 2858
Mva1269I	GAATGC	3 cut(s)	559, 2263, 3307
MvaI	CCWGG	8 cut(s)	1077, 1835, 1874, 2364, 2724, 2930, 3011, 3358
MvnI	CGCG	1 cut(s)	165
NciI	CCSGG	4 cut(s)	373, 614, 2695, 2696
NcoI	CCATGG	2 cut(s)	65, 1618
NdeI	CATATG	1 cut(s)	2281
NheI	GCTAGC	1 cut(s)	3241
NlaIV	GGNNCC	5 cut(s)	157, 1168, 2636, 2750, 2978
NmuCI	GTSAC	2 cut(s)	2225, 2573
NsbI	TGCGCA	1 cut(s)	1221
NsiI	ATGCAT	2 cut(s)	2086, 3625
NspI	RCATGY	2 cut(s)	2780, 2875
NspV	TTCGAA	2 cut(s)	794, 1069
OliI	CACNNNNGTG	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	2465
PagI	TCATGA	3 cut(s)	307, 607, 925
PaqCI	CACCTGC	1 cut(s)	2321
PceI	AGGCCT	1 cut(s)	1075
PciSI	GCTCTTC	1 cut(s)	2055
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	3 cut(s)	559, 2263, 3307
PdmI	GAANNNNTTC	2 cut(s)	2562, 3174
PfeI	GAWTC	5 cut(s)	883, 989, 1093, 1683, 2954
PflFI	GACNNNGTC	1 cut(s)	543
PfoI	TCCNGGA	1 cut(s)	371
PinAI	ACCGGT	1 cut(s)	135
PleI	GAGTC	5 cut(s)	87, 552, 827, 1939, 2892
PpsI	GAGTC	5 cut(s)	87, 552, 827, 1939, 2892
Ppu21I	YACGTR	2 cut(s)	479, 2900
PpuMI	RGGWCCY	1 cut(s)	2635
PshBI	ATTAAT	1 cut(s)	3152
PsiI	TTATAA	2 cut(s)	240, 3164
Psp124BI	GAGCTC	2 cut(s)	1866, 3198
Psp5II	RGGWCCY	1 cut(s)	2635
Psp6I	CCWGG	8 cut(s)	1075, 1833, 1872, 2362, 2722, 2928, 3009, 3356
PspFI	CCCAGC	4 cut(s)	2338, 2590, 2786, 2827
PspGI	CCWGG	8 cut(s)	1075, 1833, 1872, 2362, 2722, 2928, 3009, 3356
PspN4I	GGNNCC	5 cut(s)	157, 1168, 2636, 2750, 2978
PspPI	GGNCC	8 cut(s)	155, 375, 627, 1247, 2197, 2424, 2635, 3039
PspPPI	RGGWCCY	1 cut(s)	2635
PstI	CTGCAG	4 cut(s)	526, 1406, 1440, 3551
PstNI	CAGNNNCTG	2 cut(s)	2786, 2918
PsuI	RGATCY	5 cut(s)	69, 442, 2247, 2644, 3614
PsyI	GACNNNGTC	1 cut(s)	543
PvuII	CAGCTG	4 cut(s)	1253, 2786, 2827, 3344
RsaI	GTAC	8 cut(s)	292, 314, 477, 998, 1484, 3072, 3507, 3589
RsaNI	GTAC	8 cut(s)	291, 313, 476, 997, 1483, 3071, 3506, 3588
RseI	CAYNNNNRTG	2 cut(s)	90, 930
SacI	GAGCTC	2 cut(s)	1866, 3198
SacII	CCGCGG	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	2055
Sau96I	GGNCC	8 cut(s)	155, 375, 627, 1247, 2197, 2424, 2635, 3039
SchI	GAGTC	5 cut(s)	88, 553, 828, 1939, 2893
SexAI	ACCWGGT	1 cut(s)	1833
SfaNI	GCATC	8 cut(s)	467, 817, 1357, 1774, 3264, 3436, 3610, 3632
SfcI	CTRYAG	8 cut(s)	522, 1125, 1402, 1436, 2286, 2508, 3048, 3547
Sfr274I	CTCGAG	1 cut(s)	2465
Sfr303I	CCGCGG	1 cut(s)	166
SfuI	TTCGAA	2 cut(s)	794, 1069
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	2 cut(s)	375, 2635
SlaI	CTCGAG	1 cut(s)	2465
SmaI	CCCGGG	1 cut(s)	2696
SmiMI	CAYNNNNRTG	2 cut(s)	90, 930
SmlI	CTYRAG	4 cut(s)	2465, 2639, 3197, 3283
SmoI	CTYRAG	4 cut(s)	2465, 2639, 3197, 3283
SrfI	GCCCGGGC	1 cut(s)	2696
SseBI	AGGCCT	1 cut(s)	1075
SsiI	CCGC	9 cut(s)	90, 115, 163, 165, 207, 1021, 1602, 2585, 3455
SspI	AATATT	1 cut(s)	1374
SspMI	CTAG	2 cut(s)	2387, 3242
SstI	GAGCTC	2 cut(s)	1866, 3198
StuI	AGGCCT	1 cut(s)	1075
StyI	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2001
TaiI	ACGT	4 cut(s)	414, 481, 1488, 2902
TatI	WGTACW	2 cut(s)	996, 3587
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	5 cut(s)	883, 989, 1093, 1683, 2954
TscAI	CASTG	6 cut(s)	340, 400, 988, 1684, 2030, 3266
TseFI	GTSAC	2 cut(s)	2225, 2573
Tsp45I	GTSAC	2 cut(s)	2225, 2573
TspGWI	ACGGA	2 cut(s)	278, 3633
TspMI	CCCGGG	1 cut(s)	2694
TspRI	CASTG	6 cut(s)	340, 400, 988, 1684, 2030, 3266
Tth111I	GACNNNGTC	1 cut(s)	543
VneI	GTGCAC	1 cut(s)	495
VpaK11BI	GGWCC	2 cut(s)	375, 2635
VspI	ATTAAT	1 cut(s)	3152
XceI	RCATGY	2 cut(s)	2780, 2875
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1744, 3364
XhoI	CTCGAG	1 cut(s)	2465
XmaI	CCCGGG	1 cut(s)	2694
XmnI	GAANNNNTTC	2 cut(s)	2562, 3174
XspI	CTAG	2 cut(s)	2387, 3242
Zsp2I	ATGCAT	2 cut(s)	2086, 3625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.