RLG00000000634

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000764
Physical Location & Seq
Forward (+)
2883815 .. 2911995
28181 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000634

Sequence Viewer

Length: 561 bp
ATGCATGATTTGATACAAAAATTGGGTTGGGAACTTGTTCGTCAAGAATGTCGTGAAGAGCCTGGAAAACATAGCAGGTTGGGTCTTCCCAACGAGATCCTCCATGTATTTGTTCGGAATAAGGGGACAAGTGCAGTTCAAAGCATATTCCTCCAACATCCAACAAAAGCAAATGGATGGGGCATGCTGTGGTTAATGGATCTGAGAGGTTCACAATACTTGATATCGACTCCAGACTTCAGTGAGGTTCTGGTACTTGAGATATTGGTGCTTGCTGATTGTACAAGCTTGGTTGAGGTACCAGAGGCCGAACAACGACCCGAGCTCGAGAGTCTTGAACAAGCTGCTCTTTGGCTCTGCGGTCTCGTCGGAGCTCTCGGCAGTAGCGGCGACCTCGAAACTGCTCCGATCTACGGCAGGAGAAGTCCAGGGCTTGAGCTTGAAATCGGAGGAGGAGAGGAACCAGGGTCGGCGGGAAAGAGCGGCGGAGAGGGCGTCATTGGTGAGGAGGTGAGAGCGGTGTCAAGCTTGAGCGAGGCGGAGACACGAGTGTGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

187

Amino Acids

20.2

Weight (kDa)

4.7

Isoelectric Point (pI)

60.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 66
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 2 cut(s) 483, 518
AciI CCGC 7 cut(s) 360, 387, 473, 483, 486, 518, 539
AclWI GGATC 2 cut(s) 91, 207
AcuI CTGAAG 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 3 cut(s) 255, 283, 300
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 3 cut(s) 140, 338, 443
AjnI CCWGG 3 cut(s) 61, 427, 463
AleI CACNNNNGTG 1 cut(s) 550
AluBI AGCT 6 cut(s) 288, 325, 344, 374, 439, 528
AluI AGCT 6 cut(s) 288, 325, 344, 374, 439, 528
Alw21I GWGCWC 2 cut(s) 327, 376
Alw26I GTCTC 2 cut(s) 368, 536
AlwI GGATC 2 cut(s) 91, 207
Ama87I CYCGRG 2 cut(s) 320, 326
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 515, 523
AvaI CYCGRG 2 cut(s) 320, 326
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 2 cut(s) 327, 376
BauI CACGAG 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 327, 376
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 3 cut(s) 63, 429, 465
BcoDI GTCTC 2 cut(s) 368, 536
BfuAI ACCTGC 1 cut(s) 66
BisI GCNGC 3 cut(s) 345, 388, 484
BlsI GCNGC 3 cut(s) 346, 389, 485
Bme1390I CCNGG 3 cut(s) 63, 429, 465
BmeT110I CYCGRG 2 cut(s) 320, 326
BmiI GGNNCC 2 cut(s) 300, 462
BmrFI CCNGG 3 cut(s) 63, 429, 465
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 3 cut(s) 278, 455, 550
BsaHI GRCGYC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 428, 464
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 413
BseBI CCWGG 3 cut(s) 63, 429, 465
BseDI CCNNGG 2 cut(s) 428, 464
BseGI GGATG 2 cut(s) 157, 182
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 3 cut(s) 465, 468, 521
BseXI GCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 327, 376
BsiHKCI CYCGRG 2 cut(s) 320, 326
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 368, 536
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 2 cut(s) 320, 326
Bsp1286I GDGCHC 2 cut(s) 327, 376
Bsp1407I TGTACA 1 cut(s) 281
Bsp143I GATC 3 cut(s) 96, 199, 408
BspACI CCGC 7 cut(s) 360, 387, 473, 483, 486, 518, 539
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 300, 462
BspMI ACCTGC 1 cut(s) 66
BspPI GGATC 2 cut(s) 91, 207
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 368
BsrBI CCGCTC 2 cut(s) 483, 518
BsrGI TGTACA 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 428, 464
BssMI GATC 3 cut(s) 96, 199, 408
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 63, 429, 465
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 495
BstAUI TGTACA 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 185, 273
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 157, 182
BstKTI GATC 3 cut(s) 99, 202, 411
BstMAI GTCTC 2 cut(s) 368, 536
BstMBI GATC 3 cut(s) 96, 199, 408
BstMWI GCNNNNNNNGC 2 cut(s) 387, 492
BstNI CCWGG 3 cut(s) 63, 429, 465
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 3 cut(s) 61, 427, 463
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 96, 199
BstYI RGATCY 2 cut(s) 96, 199
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 2 cut(s) 157, 182
BtsIMutI CAGTG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 185, 273
CseI GACGC 1 cut(s) 484
Csp6I GTAC 3 cut(s) 254, 282, 299
CviAII CATG 3 cut(s) 5, 104, 184
CviQI GTAC 3 cut(s) 254, 282, 299
DdeI CTNAG 1 cut(s) 203
DpnI GATC 3 cut(s) 98, 201, 410
DpnII GATC 3 cut(s) 96, 199, 408
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 2 cut(s) 501, 554
Ecl136II GAGCTC 2 cut(s) 325, 374
Eco24I GRGCYC 2 cut(s) 327, 376
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 225
Eco53kI GAGCTC 2 cut(s) 325, 374
Eco57I CTGAAG 1 cut(s) 223
Eco88I CYCGRG 2 cut(s) 320, 326
EcoICRI GAGCTC 2 cut(s) 325, 374
EcoRII CCWGG 3 cut(s) 61, 427, 463
EcoRV GATATC 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 327, 376
FaeI CATG 3 cut(s) 8, 107, 187
FaiI YATR 5 cut(s) 6, 72, 105, 146, 185
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 4, 103, 183
FauI CCCGC 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 345, 388, 484
FokI GGATG 2 cut(s) 144, 189
FriOI GRGCYC 2 cut(s) 327, 376
Fsp4HI GCNGC 3 cut(s) 345, 388, 484
GluI GCNGC 3 cut(s) 345, 388, 484
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 308
HgaI GACGC 1 cut(s) 484
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 3 cut(s) 8, 107, 187
HindIII AAGCTT 2 cut(s) 286, 526
HinfI GANTC 2 cut(s) 229, 331
HphI GGTGA 2 cut(s) 515, 523
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 5 cut(s) 117, 204, 371, 408, 449
Hpy188III TCNNGA 5 cut(s) 44, 53, 233, 328, 335
Hpy8I GTNNAC 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 371
HpyCH4V TGCA 2 cut(s) 4, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 492
HpyF3I CTNAG 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 3 cut(s) 8, 107, 187
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 96, 199, 408
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 371, 409
Lsp1109I GCAGC 1 cut(s) 331
MalI GATC 3 cut(s) 98, 201, 410
MbiI CCGCTC 2 cut(s) 483, 518
MboI GATC 3 cut(s) 96, 199, 408
MboII GAAGA 2 cut(s) 68, 77
MflI RGATCY 2 cut(s) 96, 199
MhlI GDGCHC 2 cut(s) 327, 376
MluCI AATT 1 cut(s) 20
MlyI GAGTC 2 cut(s) 223, 340
MmeI TCCRAC 3 cut(s) 178, 185, 349
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 550
MspR9I CCNGG 3 cut(s) 63, 429, 465
MvaI CCWGG 3 cut(s) 63, 429, 465
MwoI GCNNNNNNNGC 2 cut(s) 387, 492
NdeII GATC 3 cut(s) 96, 199, 408
NlaIII CATG 3 cut(s) 8, 107, 187
NlaIV GGNNCC 2 cut(s) 300, 462
NmeAIII GCCGAG 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 550
PaeI GCATGC 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 36
PkrI GCNGC 3 cut(s) 346, 389, 485
PleI GAGTC 2 cut(s) 223, 339
PpsI GAGTC 2 cut(s) 223, 339
Psp124BI GAGCTC 2 cut(s) 327, 376
Psp6I CCWGG 3 cut(s) 61, 427, 463
PspGI CCWGG 3 cut(s) 61, 427, 463
PspN4I GGNNCC 2 cut(s) 300, 462
PsuI RGATCY 2 cut(s) 96, 199
RsaI GTAC 3 cut(s) 255, 283, 300
RsaNI GTAC 3 cut(s) 254, 282, 299
RseI CAYNNNNRTG 1 cut(s) 550
SacI GAGCTC 2 cut(s) 327, 376
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 3 cut(s) 345, 388, 484
Sau3AI GATC 3 cut(s) 96, 199, 408
SchI GAGTC 2 cut(s) 223, 340
ScrFI CCNGG 3 cut(s) 63, 429, 465
SduI GDGCHC 2 cut(s) 327, 376
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 550
SmlI CTYRAG 4 cut(s) 257, 326, 434, 529
SmoI CTYRAG 4 cut(s) 257, 326, 434, 529
SphI GCATGC 1 cut(s) 187
Sse9I AATT 1 cut(s) 20
SsiI CCGC 7 cut(s) 360, 387, 473, 483, 486, 518, 539
SstI GAGCTC 2 cut(s) 327, 376
StyD4I CCNGG 3 cut(s) 61, 427, 463
TaqI TCGA 3 cut(s) 227, 327, 396
TasI AATT 1 cut(s) 20
TatI WGTACW 1 cut(s) 281
TauI GCSGC 2 cut(s) 390, 486
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 247
TseI GCWGC 1 cut(s) 344
TspRI CASTG 1 cut(s) 247
XceI RCATGY 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.