Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34181803 .. 34182537

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1248600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTGGGACAAGAGTCTCAAAACTCTAACATCAGCTACACCTAATGTTAGGGGTCCTCCTGCTCTTGTATTTACATTCTCAGAGCTAGAAGAGAAGCTTAAGGCGGGTTACAAGGCCACAACCCAAGGGAAATTTGCTGATGCTTTACGTCTTCTCCTTGGTATTCTGCATACTATTCCTGTGATCGTAGTTGATTCAAGGAGAGAGGTTGATGAAGTAAAAGAATTAATTATCATTGTAAAGGAGTATGTTCTGGGTTTGAAGATGGAGATTAAGAGGAAGGAACTTAAAGGCGATCCGGTTCGCCAACAGGAGCCAACTGCTTACTTCACCCACTGCAACCTTCAGATGCCTCACTTGAGACTTGCATTACTAAATGCCATGAGTGTTTGCTATAAGGCTGGTAATCTCAACACGGCAGCTAACTTCGCCAGGCGACTTTTGGAAACCAACCCCACCATTGAAAACCATGCAAAGACTGCAAGACAAATCCTGCAAGCTGCCGAAAAGAACATGACTGATGCAACCCAGCTAAACTATGATTTCAGAAACCCATTTGTGGTTTGTGGGGCAACATATGTGCCTATTTACCGTGGACAGAAGGATGTGTCATGCCCATACTGCAGTTCTCGGTTTGTTCAGGACCAGGAAGGAAAACTCTGTACTGTTTTTTATCTTTCAGTGGTTGGATCAGATGCATCTGGTTTGCTCTGTTCTCCTACCCAGATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

245

Amino Acids

27.35

Weight (kDa)

9.02

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COPI_C	PF06957	14 - 244	4.8e-106	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	290, 697
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	559
AflII	CTTAAG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	198, 262, 464
AjnI	CCWGG	2 cut(s)	431, 645
AluBI	AGCT	6 cut(s)	35, 85, 97, 422, 500, 532
AluI	AGCT	6 cut(s)	35, 85, 97, 422, 500, 532
Alw26I	GTCTC	2 cut(s)	20, 355
AlwI	GGATC	2 cut(s)	290, 697
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	419, 500
ApoI	RAATTY	1 cut(s)	131
AseI	ATTAAT	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	53, 643
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	53, 643
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	431, 487
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	2 cut(s)	433, 647
BcoDI	GTCTC	2 cut(s)	20, 355
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	622
BfrI	CTTAAG	1 cut(s)	98
BisI	GCNGC	2 cut(s)	420, 501
BlsI	GCNGC	2 cut(s)	421, 502
Bme1390I	CCNGG	2 cut(s)	433, 647
Bme18I	GGWCC	2 cut(s)	53, 643
BmgT120I	GGNCC	2 cut(s)	53, 643
BmiI	GGNNCC	2 cut(s)	54, 315
BmrFI	CCNGG	2 cut(s)	433, 647
BmsI	GCATC	5 cut(s)	130, 339, 511, 685, 707
BoxI	GACNNNNGTC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	124, 157, 592
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	433, 647
BseDI	CCNNGG	3 cut(s)	124, 157, 592
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	431, 487
BseYI	CCCAGC	1 cut(s)	528
BshFI	GGCC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	20, 355
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	183, 295, 689
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	54, 315
BspMAI	CTGCAG	1 cut(s)	626
BspPI	GGATC	2 cut(s)	290, 697
BspTI	CTTAAG	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	124, 157, 592
BssMI	GATC	3 cut(s)	183, 295, 689
BssT1I	CCWWGG	2 cut(s)	124, 157
Bst2UI	CCWGG	2 cut(s)	433, 647
Bst4CI	ACNGT	2 cut(s)	593, 667
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	1 cut(s)	79
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	1 cut(s)	610
BstKTI	GATC	3 cut(s)	186, 298, 692
BstMAI	GTCTC	2 cut(s)	20, 355
BstMBI	GATC	3 cut(s)	183, 295, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 479, 621
BstNI	CCWGG	2 cut(s)	433, 647
BstPAI	GACNNNNGTC	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	431, 645
BstSFI	CTRYAG	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	431, 487
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	334, 687
Cac8I	GCNNGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	53, 643
Csp6I	GTAC	1 cut(s)	663
CviAII	CATG	4 cut(s)	382, 470, 514, 612
CviJI	RGCY	9 cut(s)	35, 85, 97, 116, 316, 401, 422, 500, 532
CviKI_1	RGCY	9 cut(s)	35, 85, 97, 116, 316, 401, 422, 500, 532
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	3 cut(s)	185, 297, 691
DpnII	GATC	3 cut(s)	183, 295, 689
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	124, 157
Eco47I	GGWCC	2 cut(s)	53, 643
Eco57I	CTGAAG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	431, 645
EcoT14I	CCWWGG	2 cut(s)	124, 157
EcoT22I	ATGCAT	1 cut(s)	700
ErhI	CCWWGG	2 cut(s)	124, 157
FaeI	CATG	4 cut(s)	385, 473, 517, 615
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	4 cut(s)	381, 469, 513, 611
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	420, 501
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	2 cut(s)	420, 501
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	420, 501
GsaI	CCCAGC	1 cut(s)	532
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	4 cut(s)	385, 473, 517, 615
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	13, 194
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	4 cut(s)	82, 348, 548, 694
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	4 cut(s)	274, 353, 595, 644
HpyCH4III	ACNGT	2 cut(s)	593, 667
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	9 cut(s)	169, 339, 368, 473, 482, 496, 524, 624, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 479, 621
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	385, 473, 517, 615
Kzo9I	GATC	3 cut(s)	183, 295, 689
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	431, 487
LweI	GCATC	5 cut(s)	130, 339, 511, 685, 707
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	3 cut(s)	185, 297, 691
MboI	GATC	3 cut(s)	183, 295, 689
MboII	GAAGA	3 cut(s)	101, 143, 274
MluCI	AATT	3 cut(s)	131, 224, 228
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	4 cut(s)	66, 199, 270, 363
Mph1103I	ATGCAT	1 cut(s)	700
MseI	TTAA	4 cut(s)	99, 227, 273, 288
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	433, 647
MvaI	CCWGG	2 cut(s)	433, 647
MwoI	GCNNNNNNNGC	3 cut(s)	428, 479, 621
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	3 cut(s)	183, 295, 689
NlaIII	CATG	4 cut(s)	385, 473, 517, 615
NlaIV	GGNNCC	2 cut(s)	54, 315
NsiI	ATGCAT	1 cut(s)	700
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	421, 502
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	431, 645
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	2 cut(s)	431, 645
PspN4I	GGNNCC	2 cut(s)	54, 315
PspPI	GGNCC	2 cut(s)	53, 643
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	626
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
SaqAI	TTAA	4 cut(s)	99, 227, 273, 288
SatI	GCNGC	2 cut(s)	420, 501
Sau3AI	GATC	3 cut(s)	183, 295, 689
Sau96I	GGNCC	2 cut(s)	53, 643
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	433, 647
SfaNI	GCATC	5 cut(s)	130, 339, 511, 685, 707
SfcI	CTRYAG	1 cut(s)	622
SinI	GGWCC	2 cut(s)	53, 643
SmlI	CTYRAG	2 cut(s)	98, 358
SmoI	CTYRAG	2 cut(s)	98, 358
Sse9I	AATT	3 cut(s)	131, 224, 228
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	431, 645
StyI	CCWWGG	2 cut(s)	124, 157
TaaI	ACNGT	2 cut(s)	593, 667
TaiI	ACGT	1 cut(s)	151
TasI	AATT	3 cut(s)	131, 224, 228
TatI	WGTACW	1 cut(s)	662
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	4 cut(s)	99, 227, 273, 288
Tru9I	TTAA	4 cut(s)	99, 227, 273, 288
TscAI	CASTG	2 cut(s)	341, 687
TseI	GCWGC	2 cut(s)	419, 500
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	341, 687
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	53, 643
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.