Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

23557686 .. 23561921

Gene Structure 4236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGATAATGAAATATGACATAATCAGAACGCTTGAAGCTACTGTCTACATTACGAAAGTTTCTGCAACTGTCCTTTGCTTGGATCGGGATGGGAAAAATATGGCCATAGTTATTGATGCCACAGAATACATCTTCGAGTTATCCCTTTTGAAGAAGAAATATGACAATGTTATGAGCATGATAAGAAACTCACAGCTCTGTGGGCAGGGGATGATAGCTTATATGCAGCAGAAGGGGTTCTCCAAAGTTGCTCTCCATTTTGTGAAAGATGAAAAAACTCGATTCAATCTGGCAGTAGAGAGTGGAAATATTCAAATTGCTGTTGAATCTGCTACAGCAATTGATGAACAAGATTACTGGTATAGGTTGGGTATGGAGGCTCTTCGACAAGGCAATGCTGGTATTGTACCAGAGGCCGAACAACGACCCGAGCTCGAGAGTCTTGAACAAGCTGCTCTTTGGCTCTGCGGTCTCGCCGGAGCTCTTGGCAGTAGCGGCGACCTCGAAACTGCTCCGATCTACGGCAGGAGAAGTCTAGGGCTTGAGCTTGAAATCGGAGGAGGAGAGGAACCAGGGTCGGCGGGAAAGAGCGGCGGAGAGGGCGTCATTGGTGAGGAGGTGAGAGCGGTGTCAAGCTTGAGCGAGGCGGAGACACGAGTGTGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

224

Amino Acids

24.35

Weight (kDa)

4.72

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_COPA_B	PF23953	72 - 140	1.1e-08	COPA/B TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	594, 629
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	7 cut(s)	471, 498, 584, 594, 597, 629, 650
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	82, 524
AgsI	TTSAA	7 cut(s)	38, 154, 289, 317, 329, 449, 554
AjnI	CCWGG	1 cut(s)	574
AleI	CACNNNNGTG	1 cut(s)	661
AluBI	AGCT	8 cut(s)	41, 199, 221, 436, 455, 485, 550, 639
AluI	AGCT	8 cut(s)	41, 199, 221, 436, 455, 485, 550, 639
Alw21I	GWGCWC	2 cut(s)	438, 487
Alw26I	GTCTC	2 cut(s)	479, 647
AlwI	GGATC	1 cut(s)	93
Ama87I	CYCGRG	2 cut(s)	431, 437
AoxI	GGCC	2 cut(s)	105, 417
ApeKI	GCWGC	2 cut(s)	229, 455
Asp700I	GAANNNNTTC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	626, 634
AvaI	CYCGRG	2 cut(s)	431, 437
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	438, 487
BauI	CACGAG	1 cut(s)	657
Bbv12I	GWGCWC	2 cut(s)	438, 487
BbvI	GCAGC	2 cut(s)	241, 442
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	479, 647
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	336
BisI	GCNGC	4 cut(s)	230, 456, 499, 595
BlsI	GCNGC	4 cut(s)	231, 457, 500, 596
Bme1390I	CCNGG	1 cut(s)	576
BmeT110I	CYCGRG	2 cut(s)	431, 437
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	566, 661
BsaHI	GRCGYC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 524
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	2 cut(s)	97, 219
BseLI	CCNNNNNNNGG	2 cut(s)	82, 524
BseMI	GCAATG	1 cut(s)	403
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	3 cut(s)	576, 579, 632
BseXI	GCAGC	2 cut(s)	241, 442
BshFI	GGCC	2 cut(s)	107, 419
BsiHKAI	GWGCWC	2 cut(s)	438, 487
BsiHKCI	CYCGRG	2 cut(s)	431, 437
BsiSI	CCGG	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	82, 524
BsmAI	GTCTC	2 cut(s)	479, 647
BsnI	GGCC	2 cut(s)	107, 419
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	2 cut(s)	431, 437
Bsp1286I	GDGCHC	2 cut(s)	438, 487
Bsp143I	GATC	2 cut(s)	85, 519
BspACI	CCGC	7 cut(s)	471, 498, 584, 594, 597, 629, 650
BspANI	GGCC	2 cut(s)	107, 419
BspLI	GGNNCC	1 cut(s)	573
BspPI	GGATC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	479
BsrBI	CCGCTC	2 cut(s)	594, 629
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	2 cut(s)	85, 519
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	46, 73
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	97, 219
BstKTI	GATC	2 cut(s)	88, 522
BstMAI	GTCTC	2 cut(s)	479, 647
BstMBI	GATC	2 cut(s)	85, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 498, 603
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	241, 442
BsuRI	GGCC	2 cut(s)	107, 419
BtsCI	GGATG	2 cut(s)	97, 219
CseI	GACGC	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	1 cut(s)	181
CviQI	GTAC	1 cut(s)	410
DpnI	GATC	2 cut(s)	87, 521
DpnII	GATC	2 cut(s)	85, 519
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	2 cut(s)	612, 665
Ecl136II	GAGCTC	2 cut(s)	436, 485
Eco24I	GRGCYC	2 cut(s)	438, 487
Eco31I	GGTCTC	1 cut(s)	479
Eco53kI	GAGCTC	2 cut(s)	436, 485
Eco88I	CYCGRG	2 cut(s)	431, 437
EcoICRI	GAGCTC	2 cut(s)	436, 485
EcoRII	CCWGG	1 cut(s)	574
EcoT38I	GRGCYC	2 cut(s)	438, 487
FaeI	CATG	1 cut(s)	184
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	230, 456, 499, 595
FokI	GGATG	2 cut(s)	104, 226
FriOI	GRGCYC	2 cut(s)	438, 487
Fsp4HI	GCNGC	4 cut(s)	230, 456, 499, 595
FspBI	CTAG	1 cut(s)	539
GluI	GCNGC	4 cut(s)	230, 456, 499, 595
HaeIII	GGCC	2 cut(s)	107, 419
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	3 cut(s)	285, 329, 442
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	2 cut(s)	626, 634
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	29, 519, 560
Hpy188III	TCNNGA	3 cut(s)	89, 439, 446
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	46, 73
HpyCH4V	TGCA	2 cut(s)	68, 229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 498, 603
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	85, 519
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	482, 520
LpnPI	CCDG	9 cut(s)	194, 278, 346, 387, 426, 493, 514, 561, 588
Lsp1109I	GCAGC	2 cut(s)	241, 442
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	539
MalI	GATC	2 cut(s)	87, 521
MbiI	CCGCTC	2 cut(s)	594, 629
MboI	GATC	2 cut(s)	85, 519
MboII	GAAGA	4 cut(s)	127, 166, 169, 377
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	438, 487
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	2 cut(s)	318, 342
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	451
Mox20I	TGGCCA	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	661
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	205, 498, 603
NdeII	GATC	2 cut(s)	85, 519
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	573
OliI	CACNNNNGTG	1 cut(s)	661
PaeR7I	CTCGAG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	285, 329
PkrI	GCNGC	4 cut(s)	231, 457, 500, 596
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Psp124BI	GAGCTC	2 cut(s)	438, 487
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	573
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	2 cut(s)	438, 487
SapI	GCTCTTC	1 cut(s)	390
SatI	GCNGC	4 cut(s)	230, 456, 499, 595
Sau3AI	GATC	2 cut(s)	85, 519
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	2 cut(s)	438, 487
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	3 cut(s)	437, 545, 640
SmoI	CTYRAG	3 cut(s)	437, 545, 640
Sse9I	AATT	2 cut(s)	318, 342
SsiI	CCGC	7 cut(s)	471, 498, 584, 594, 597, 629, 650
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	2 cut(s)	438, 487
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	2 cut(s)	46, 73
TaqI	TCGA	5 cut(s)	138, 283, 388, 438, 507
TasI	AATT	2 cut(s)	318, 342
TauI	GCSGC	2 cut(s)	501, 597
TfiI	GAWTC	2 cut(s)	285, 329
TseI	GCWGC	2 cut(s)	229, 455
TspDTI	ATGAA	3 cut(s)	26, 288, 363
XhoI	CTCGAG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.