The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| COPI_C | PF06957 | 24 - 139 | 7.1e-43 | Coatomer (COPI) alpha subunit C-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 202 |
| AfaI | GTAC | 2 cut(s) | 273, 355 |
| AgsI | TTSAA | 1 cut(s) | 238 |
| AluBI | AGCT | 3 cut(s) | 11, 113, 349 |
| AluI | AGCT | 3 cut(s) | 11, 113, 349 |
| Alw26I | GTCTC | 2 cut(s) | 131, 304 |
| ApeKI | GCWGC | 5 cut(s) | 11, 29, 110, 184, 191 |
| ApoI | RAATTY | 1 cut(s) | 202 |
| AspLEI | GCGC | 1 cut(s) | 16 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 255, 288 |
| BbvI | GCAGC | 4 cut(s) | 16, 122, 171, 178 |
| BccI | CCATC | 3 cut(s) | 51, 120, 418 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 372, 406 |
| BcoDI | GTCTC | 2 cut(s) | 131, 304 |
| BfmI | CTRYAG | 3 cut(s) | 108, 185, 192 |
| BisI | GCNGC | 5 cut(s) | 12, 30, 111, 185, 192 |
| BlsI | GCNGC | 5 cut(s) | 13, 31, 112, 186, 193 |
| BmsI | GCATC | 1 cut(s) | 376 |
| BseGI | GGATG | 2 cut(s) | 62, 301 |
| BseXI | GCAGC | 4 cut(s) | 16, 122, 171, 178 |
| BsgI | GTGCAG | 1 cut(s) | 402 |
| BslFI | GGGAC | 1 cut(s) | 74 |
| BsmAI | GTCTC | 2 cut(s) | 131, 304 |
| BsmFI | GGGAC | 1 cut(s) | 74 |
| Bsp143I | GATC | 1 cut(s) | 364 |
| BspMAI | CTGCAG | 3 cut(s) | 112, 189, 196 |
| BssMI | GATC | 1 cut(s) | 364 |
| Bst4CI | ACNGT | 3 cut(s) | 151, 324, 358 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 184 |
| BstC8I | GCNNGC | 2 cut(s) | 176, 189 |
| BstDEI | CTNAG | 1 cut(s) | 414 |
| BstF5I | GGATG | 2 cut(s) | 62, 301 |
| BstHHI | GCGC | 1 cut(s) | 16 |
| BstKTI | GATC | 1 cut(s) | 367 |
| BstMAI | GTCTC | 2 cut(s) | 131, 304 |
| BstMBI | GATC | 1 cut(s) | 364 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 20, 29, 74, 110, 119, 184 |
| BstSFI | CTRYAG | 3 cut(s) | 108, 185, 192 |
| BstV1I | GCAGC | 4 cut(s) | 16, 122, 171, 178 |
| BtsCI | GGATG | 2 cut(s) | 62, 301 |
| BtsI | GCAGTG | 2 cut(s) | 105, 378 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 378 |
| Cac8I | GCNNGC | 2 cut(s) | 176, 189 |
| CfoI | GCGC | 1 cut(s) | 16 |
| Csp6I | GTAC | 2 cut(s) | 272, 354 |
| CviJI | RGCY | 7 cut(s) | 11, 23, 113, 130, 191, 336, 349 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 23, 113, 130, 191, 336, 349 |
| CviQI | GTAC | 2 cut(s) | 272, 354 |
| DdeI | CTNAG | 1 cut(s) | 414 |
| DpnI | GATC | 1 cut(s) | 366 |
| DpnII | GATC | 1 cut(s) | 364 |
| FaiI | YATR | 5 cut(s) | 213, 231, 268, 270, 403 |
| FaqI | GGGAC | 1 cut(s) | 74 |
| FauNDI | CATATG | 1 cut(s) | 268 |
| Fnu4HI | GCNGC | 5 cut(s) | 12, 30, 111, 185, 192 |
| FokI | GGATG | 2 cut(s) | 69, 308 |
| Fsp4HI | GCNGC | 5 cut(s) | 12, 30, 111, 185, 192 |
| GlaI | GCGC | 1 cut(s) | 15 |
| GluI | GCNGC | 5 cut(s) | 12, 30, 111, 185, 192 |
| HhaI | GCGC | 1 cut(s) | 16 |
| Hin6I | GCGC | 1 cut(s) | 14 |
| HinP1I | GCGC | 1 cut(s) | 14 |
| HinfI | GANTC | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 1 cut(s) | 417 |
| HpyAV | CCTTC | 2 cut(s) | 286, 335 |
| HpyCH4III | ACNGT | 3 cut(s) | 151, 324, 358 |
| HpyCH4V | TGCA | 6 cut(s) | 52, 110, 187, 194, 371, 383 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 20, 29, 74, 110, 119, 184 |
| HpyF3I | CTNAG | 1 cut(s) | 414 |
| HspAI | GCGC | 1 cut(s) | 14 |
| Kzo9I | GATC | 1 cut(s) | 364 |
| LmnI | GCTCC | 1 cut(s) | 8 |
| LpnPI | CCDG | 4 cut(s) | 136, 146, 160, 173 |
| Lsp1109I | GCAGC | 4 cut(s) | 16, 122, 171, 178 |
| LweI | GCATC | 1 cut(s) | 376 |
| MaeIII | GTNAC | 3 cut(s) | 41, 168, 250 |
| MalI | GATC | 1 cut(s) | 366 |
| MboI | GATC | 1 cut(s) | 364 |
| MboII | GAAGA | 1 cut(s) | 211 |
| MfeI | CAATTG | 2 cut(s) | 36, 72 |
| MluCI | AATT | 4 cut(s) | 36, 72, 202, 276 |
| MlyI | GAGTC | 1 cut(s) | 166 |
| MnlI | CCTC | 2 cut(s) | 278, 387 |
| MunI | CAATTG | 2 cut(s) | 36, 72 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 20, 29, 74, 110, 119, 184 |
| NdeI | CATATG | 1 cut(s) | 268 |
| NdeII | GATC | 1 cut(s) | 364 |
| NmuCI | GTSAC | 1 cut(s) | 250 |
| PkrI | GCNGC | 5 cut(s) | 13, 31, 112, 186, 193 |
| PleI | GAGTC | 1 cut(s) | 165 |
| PpsI | GAGTC | 1 cut(s) | 165 |
| PstI | CTGCAG | 3 cut(s) | 112, 189, 196 |
| RsaI | GTAC | 2 cut(s) | 273, 355 |
| RsaNI | GTAC | 2 cut(s) | 272, 354 |
| SatI | GCNGC | 5 cut(s) | 12, 30, 111, 185, 192 |
| Sau3AI | GATC | 1 cut(s) | 364 |
| SchI | GAGTC | 1 cut(s) | 166 |
| SetI | ASST | 5 cut(s) | 13, 102, 115, 351, 398 |
| SfaNI | GCATC | 1 cut(s) | 376 |
| SfcI | CTRYAG | 3 cut(s) | 108, 185, 192 |
| Sse9I | AATT | 4 cut(s) | 36, 72, 202, 276 |
| TaaI | ACNGT | 3 cut(s) | 151, 324, 358 |
| TaqI | TCGA | 1 cut(s) | 392 |
| TasI | AATT | 4 cut(s) | 36, 72, 202, 276 |
| TatI | WGTACW | 1 cut(s) | 353 |
| TscAI | CASTG | 2 cut(s) | 112, 378 |
| TseFI | GTSAC | 1 cut(s) | 250 |
| TseI | GCWGC | 5 cut(s) | 11, 29, 110, 184, 191 |
| Tsp45I | GTSAC | 1 cut(s) | 250 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 2 cut(s) | 112, 378 |
| XapI | RAATTY | 1 cut(s) | 202 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 130 |