Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34247346 .. 34248548

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1249900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATTATCCCTATTCGAAGGCGTGGTTCTTCCAACTTGAATCAAGGGGCAAAGACACTATCTTACAGCCCTACAGAAAATGCTGCTTTGATATGTTCAGATATGGAAGGGGGGTCTTATGAACTATACGTTATACCCAAAGATAGCTTTGGTCGGGGTGATACTGCGCAGGAGGCAAAAAGAGGTATCGGAGGCCCAGCTGTGTTCGTGGCTCGAAATAGGTTTGCAGTGCTTGAAAAGAGCACCAACCAAGTTATAGCTAAAAATCTGAAAAATGAGATTGTCAAGAAGAGTGCCCTACCTATTAGTCATTATTTTTTACCTGCAGCAGAGAATTATTGTTGGGGAGCTAGGGATGACAATGGCGTCTTCATATATACAACCTTGAACCACATCAAATACTGCCTTCCTAATGGGGATAGTAGAATCATCAGGACCCTCGACGTTCCCGTATATATAACCAAAGTGTATGGAAAACCCATACATTGCTTGGATCGAGATGGGAAGAACCGTGCCATTGTTGTTGATGCAACAGAATATGTTTTCAAGTTATCCTTACTGAAGAAGAGGTATGACCAGGTTATGAGCATGATAAGGAGTTCTGAGCTCTGTGGCCAGGCCATGATTGCATATCTACAGCAGAAAGGTTTCCCTGAGGTTGCCCTTCATTTTGTGAAGGATGAGAGGACTCGCTTCAACTTGGCACTAGGGAGCGGGAACATCCAGATTGCTGTTGCTTCTGCCAAGGAGATTGATGAGAAAGATCACTGGTATCGATTGGGAGTGAAATCTCCGTCTCTATTGTTACCACCAATGCCAATCATCTGCGGAGGAGATTGGCCCTTGTTGACGGTCATGAGAGGAATATTTGAGGGTGGTCTTGATAATGTGGGCAAGAATATTGAGGAAGATTATGGAGAGGCTGCAGATGCTGATTGGGGAGAGGAGTTGAATCTTGTTGACGTGGACAATATTCCAAATGGAGACATCAGTGCAGTGCTGGATGATGAGGAAGCACACGAGGAAAATGAGGAGGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

348

Amino Acids

38.45

Weight (kDa)

5.24

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B-prop_COPA_B_2nd	PF04053	6 - 101	5.4e-13	COPA/B second beta-propeller
B-prop_COPA_B_2nd	PF04053	119 - 165	4.6e-12	COPA/B second beta-propeller
TPR_COPA_B	PF23953	207 - 261	2.9e-07	COPA/B TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
Acc16I	TGCGCA	1 cut(s)	168
Acc36I	ACCTGC	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	714
AciI	CCGC	2 cut(s)	714, 828
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	366
AgsI	TTSAA	6 cut(s)	40, 236, 388, 547, 697, 952
AjiI	CACGTC	1 cut(s)	964
AjnI	CCWGG	2 cut(s)	576, 615
AluBI	AGCT	5 cut(s)	147, 200, 260, 350, 607
AluI	AGCT	5 cut(s)	147, 200, 260, 350, 607
Alw21I	GWGCWC	2 cut(s)	245, 609
Alw26I	GTCTC	2 cut(s)	801, 978
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	932
AoxI	GGCC	4 cut(s)	193, 613, 618, 839
ApeKI	GCWGC	3 cut(s)	83, 326, 923
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	194, 435, 840
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	435
AxyI	CCTNAGG	1 cut(s)	654
BaeGI	GKGCMC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	609
BauI	CACGAG	1 cut(s)	1019
BbsI	GAAGAC	1 cut(s)	361
Bbv12I	GWGCWC	2 cut(s)	245, 609
BbvI	GCAGC	3 cut(s)	70, 338, 910
BccI	CCATC	1 cut(s)	494
BciT130I	CCWGG	2 cut(s)	578, 617
BcoDI	GTCTC	2 cut(s)	801, 978
BfaI	CTAG	2 cut(s)	351, 707
BfmI	CTRYAG	4 cut(s)	72, 324, 635, 924
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	3 cut(s)	84, 327, 924
BlsI	GCNGC	3 cut(s)	85, 328, 925
Bme1390I	CCNGG	2 cut(s)	578, 617
Bme18I	GGWCC	1 cut(s)	435
BmgBI	CACGTC	1 cut(s)	964
BmgT120I	GGNCC	3 cut(s)	194, 435, 840
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	2 cut(s)	578, 617
BmsI	GCATC	2 cut(s)	517, 919
BpiI	GAAGAC	1 cut(s)	361
Bpu14I	TTCGAA	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	775
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	744
Bse1I	ACTGG	1 cut(s)	773
Bse21I	CCTNAGG	1 cut(s)	654
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	2 cut(s)	578, 617
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	4 cut(s)	361, 685, 720, 1009
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	594, 645
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	2 cut(s)	846, 959
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	70, 338, 910
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	1014
BshFI	GGCC	4 cut(s)	195, 615, 620, 841
BshVI	ATCGAT	1 cut(s)	775
BsiHKAI	GWGCWC	2 cut(s)	245, 609
BsmAI	GTCTC	2 cut(s)	801, 978
BsmBI	CGTCTC	1 cut(s)	801
BsnI	GGCC	4 cut(s)	195, 615, 620, 841
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	3 cut(s)	245, 298, 609
Bsp143I	GATC	2 cut(s)	493, 763
BspACI	CCGC	2 cut(s)	714, 828
BspANI	GGCC	4 cut(s)	195, 615, 620, 841
BspCNI	CTCAG	2 cut(s)	595, 646
BspDI	ATCGAT	1 cut(s)	775
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	1 cut(s)	437
BspMAI	CTGCAG	2 cut(s)	328, 928
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	773
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	2 cut(s)	493, 763
BssNI	GRCGYC	1 cut(s)	366
BssSI	CACGAG	1 cut(s)	1019
BssT1I	CCWWGG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	1019
Bst2UI	CCWGG	2 cut(s)	578, 617
Bst4CI	ACNGT	2 cut(s)	512, 853
Bst6I	CTCTTC	2 cut(s)	284, 560
BstACI	GRCGYC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	603, 654
BstF5I	GGATG	4 cut(s)	361, 685, 720, 1009
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	496, 766
BstMAI	GTCTC	2 cut(s)	801, 978
BstMBI	GATC	2 cut(s)	493, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 626, 929
BstNI	CCWGG	2 cut(s)	578, 617
BstSCI	CCNGG	2 cut(s)	576, 615
BstSFI	CTRYAG	4 cut(s)	72, 324, 635, 924
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	70, 338, 910
BstV2I	GAAGAC	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	4 cut(s)	195, 615, 620, 841
BsuTUI	ATCGAT	1 cut(s)	775
BtrI	CACGTC	1 cut(s)	964
BtsCI	GGATG	4 cut(s)	361, 685, 720, 1009
BtsI	GCAGTG	2 cut(s)	234, 1002
BtsIMutI	CAGTG	4 cut(s)	234, 766, 997, 1002
BveI	ACCTGC	1 cut(s)	331
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	194, 435, 840
ClaI	ATCGAT	1 cut(s)	775
CseI	GACGC	1 cut(s)	355
CsiI	ACCWGGT	1 cut(s)	576
CviAII	CATG	3 cut(s)	589, 622, 856
DdeI	CTNAG	2 cut(s)	603, 654
DpnI	GATC	2 cut(s)	495, 765
DpnII	GATC	2 cut(s)	493, 763
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	284, 560
EarI	CTCTTC	2 cut(s)	284, 560
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	581
Eco81I	CCTNAGG	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	607
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	576, 615
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	744
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	3 cut(s)	592, 625, 859
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FatI	CATG	3 cut(s)	588, 621, 855
FauI	CCCGC	1 cut(s)	707
Fnu4HI	GCNGC	3 cut(s)	84, 327, 924
FokI	GGATG	4 cut(s)	368, 692, 707, 1016
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	3 cut(s)	84, 327, 924
FspBI	CTAG	2 cut(s)	351, 707
FspI	TGCGCA	1 cut(s)	168
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	84, 327, 924
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	4 cut(s)	195, 615, 620, 841
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	592, 625, 859
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	2 cut(s)	849, 961
HindII	GTYRAC	2 cut(s)	849, 961
HinfI	GANTC	4 cut(s)	40, 426, 688, 952
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	849, 961, 967
Hpy188I	TCNGA	4 cut(s)	100, 191, 270, 604
Hpy188III	TCNNGA	6 cut(s)	286, 433, 497, 724, 856, 881
Hpy8I	GTNNAC	3 cut(s)	849, 961, 967
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	5 cut(s)	12, 101, 416, 670, 674
HpyCH4III	ACNGT	2 cut(s)	512, 853
HpyCH4IV	ACGT	3 cut(s)	129, 444, 963
HpyCH4V	TGCA	6 cut(s)	227, 326, 530, 629, 926, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 626, 929
HpyF3I	CTNAG	2 cut(s)	603, 654
HpySE526I	ACGT	3 cut(s)	129, 444, 963
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	592, 625, 859
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	493, 763
LmnI	GCTCC	2 cut(s)	347, 711
Lsp1109I	GCAGC	3 cut(s)	70, 338, 910
LweI	GCATC	2 cut(s)	517, 919
MabI	ACCWGGT	1 cut(s)	576
MaeI	CTAG	2 cut(s)	351, 707
MaeII	ACGT	3 cut(s)	129, 444, 963
MaeIII	GTNAC	1 cut(s)	804
MalI	GATC	2 cut(s)	495, 765
MbiI	CCGCTC	1 cut(s)	714
MboI	GATC	2 cut(s)	493, 763
MboII	GAAGA	7 cut(s)	21, 301, 361, 517, 574, 577, 920
MhlI	GDGCHC	3 cut(s)	245, 298, 609
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	1 cut(s)	334
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	1 cut(s)	57
Mox20I	TGGCCA	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	578, 617
MvaI	CCWGG	2 cut(s)	578, 617
MwoI	GCNNNNNNNGC	3 cut(s)	173, 626, 929
NdeII	GATC	2 cut(s)	493, 763
NlaIII	CATG	3 cut(s)	592, 625, 859
NlaIV	GGNNCC	1 cut(s)	437
NsbI	TGCGCA	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	16
PagI	TCATGA	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	40, 426, 952
PkrI	GCNGC	3 cut(s)	85, 328, 925
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PpuMI	RGGWCCY	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	576, 615
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	2 cut(s)	576, 615
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	3 cut(s)	194, 435, 840
PspPPI	RGGWCCY	1 cut(s)	435
PstI	CTGCAG	2 cut(s)	328, 928
PstNI	CAGNNNCTG	1 cut(s)	932
PvuII	CAGCTG	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	609
SatI	GCNGC	3 cut(s)	84, 327, 924
Sau3AI	GATC	2 cut(s)	493, 763
Sau96I	GGNCC	3 cut(s)	194, 435, 840
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	2 cut(s)	578, 617
SduI	GDGCHC	3 cut(s)	245, 298, 609
SexAI	ACCWGGT	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	517, 919
SfcI	CTRYAG	4 cut(s)	72, 324, 635, 924
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	1 cut(s)	435
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	2 cut(s)	714, 828
SspI	AATATT	3 cut(s)	867, 901, 973
SspMI	CTAG	2 cut(s)	351, 707
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	2 cut(s)	576, 615
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	512, 853
TaiI	ACGT	3 cut(s)	132, 447, 966
TaqI	TCGA	5 cut(s)	16, 214, 441, 496, 775
TasI	AATT	1 cut(s)	334
TfiI	GAWTC	3 cut(s)	40, 426, 952
TscAI	CASTG	4 cut(s)	234, 773, 997, 1002
TseI	GCWGC	3 cut(s)	83, 326, 923
TspDTI	ATGAA	3 cut(s)	135, 361, 656
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	4 cut(s)	234, 773, 997, 1002
VpaK11BI	GGWCC	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	351, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.