Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

3564031 .. 3568682

Gene Structure 4652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCATGATTTGATACAAAAATTGGGCTGGGAACTTGTTCGTCAAGAATGTTGTGAAGAGCCTGGAAAACGTAGCAGGTTGTGCCTTCCCAACGAGATCCTCCATGTATTTGATCGGAATAAGGGGACAAGTGCAGTTCAAAGCATATTCCTCCAACGTCCAACAAAAGACAATGTGGGATGGGGCATGCTGCGGTTAATATTGGATCTGAGAGGTTCACAATACTTGATATCGACTCCAGACTTCAGTGAGGTTCCGGTACTTGAGATATTGGTGCTTGCTGATTGTACAAGCTTGGTTGAGATGCCTGAGAATCTGAATTGTTTGGAATGTCTGGAGGAGCTGTATATAGATGGTACTGCTATAAAGGAGTTATCATTCCTCCTAGACTTAAGTGATTGCAACCTGATGGATGGAGCAATTCCCAATGACCTGAGCAGCTTAATCTCCTTGGAAAGATTAGATTTAAATGATGCCCAGGGATCTTGTGACATGCGTTTCAGCATGAGAGCAGATGAGCATTCGGAGTGGAAACAAGTTGATCATTTGTCAGTTTCAGTTACAACACTTCTAAAAGACATTGAAGTTTCGGATGACTTGTCAAATTCCATTAATGCTGTTTTTGCTGACAATGAAATTCCAGAGTGGTTCAGCAGTGTAACCGTCAACAATAGTTACAAAACCATATCAATCCTGATACCTCCAAATCTGACAGATGATAACAAGTGGAAGGGGGTTGCTGCATGTGCTGTTTTCTCATTCAAGGGACTTTCTGCCATCTCCCTTGTTGAACTGGATTCTAAAAGGAGAAATTTATTCCGCCTCATGAACAAGTCTCCACAACTGCTGAGAAAGAACATTGAGACTGTTCTTCCAAGATACCTCGAGGTACGTGGGTCTGTTTCGCTGTCTGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

307

Amino Acids

34.44

Weight (kDa)

4.75

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	884
Acc36I	ACCTGC	1 cut(s)	66
AciI	CCGC	2 cut(s)	193, 820
AclWI	GGATC	3 cut(s)	91, 213, 490
AcsI	RAATTY	3 cut(s)	604, 636, 811
AcuI	CTGAAG	1 cut(s)	229
AfaI	GTAC	4 cut(s)	261, 289, 358, 891
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	140, 584, 763, 791
AjnI	CCWGG	2 cut(s)	61, 477
AluBI	AGCT	3 cut(s)	294, 343, 441
AluI	AGCT	3 cut(s)	294, 343, 441
Alw26I	GTCTC	2 cut(s)	840, 857
AlwI	GGATC	3 cut(s)	91, 213, 490
Ama87I	CYCGRG	1 cut(s)	884
ApeKI	GCWGC	3 cut(s)	190, 438, 740
ApoI	RAATTY	3 cut(s)	604, 636, 811
AseI	ATTAAT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	884
BaeI	ACNNNNGTAYC	2 cut(s)	881, 914
BbvI	GCAGC	3 cut(s)	177, 450, 727
BccI	CCATC	5 cut(s)	174, 347, 403, 407, 785
BciT130I	CCWGG	2 cut(s)	63, 479
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	840, 857
BfaI	CTAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	3 cut(s)	191, 439, 741
BlsI	GCNGC	3 cut(s)	192, 440, 742
Bme1390I	CCNGG	2 cut(s)	63, 479
BmeT110I	CYCGRG	1 cut(s)	884
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	63, 479
BmsI	GCATC	2 cut(s)	294, 463
BpmI	CTGGAG	2 cut(s)	222, 356
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	893
BsaJI	CCNNGG	3 cut(s)	450, 477, 478
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse1I	ACTGG	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	63, 479
BseDI	CCNNGG	3 cut(s)	450, 477, 478
BseGI	GGATG	3 cut(s)	185, 418, 598
BseMII	CTCAG	4 cut(s)	200, 300, 425, 839
BseNI	ACTGG	1 cut(s)	798
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	177, 450, 727
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	884
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	139, 780
BsmAI	GTCTC	2 cut(s)	840, 857
BsmFI	GGGAC	2 cut(s)	139, 780
BsmI	GAATGC	1 cut(s)	520
BsoBI	CYCGRG	1 cut(s)	884
Bsp1407I	TGTACA	1 cut(s)	287
Bsp143I	GATC	5 cut(s)	96, 112, 205, 482, 541
BspACI	CCGC	2 cut(s)	193, 820
BspCNI	CTCAG	4 cut(s)	201, 301, 426, 840
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	66
BspPI	GGATC	3 cut(s)	91, 213, 490
BspQI	GCTCTTC	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	391
BsrGI	TGTACA	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	798
BssECI	CCNNGG	3 cut(s)	450, 477, 478
BssMI	GATC	5 cut(s)	96, 112, 205, 482, 541
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	63, 479
Bst4CI	ACNGT	2 cut(s)	664, 868
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstAUI	TGTACA	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	893
BstC8I	GCNNGC	2 cut(s)	188, 279
BstDEI	CTNAG	4 cut(s)	209, 309, 434, 848
BstF5I	GGATG	3 cut(s)	185, 418, 598
BstKTI	GATC	5 cut(s)	99, 115, 208, 485, 544
BstMAI	GTCTC	2 cut(s)	840, 857
BstMBI	GATC	5 cut(s)	96, 112, 205, 482, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 623, 746
BstNI	CCWGG	2 cut(s)	63, 479
BstNSI	RCATGY	3 cut(s)	190, 496, 747
BstSCI	CCNGG	2 cut(s)	61, 477
BstV1I	GCAGC	3 cut(s)	177, 450, 727
BstX2I	RGATCY	3 cut(s)	96, 205, 482
BstYI	RGATCY	3 cut(s)	96, 205, 482
BtsCI	GGATG	3 cut(s)	185, 418, 598
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	253, 661
BveI	ACCTGC	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	188, 279
CciI	TCATGA	1 cut(s)	825
Csp6I	GTAC	4 cut(s)	260, 288, 357, 890
CviAII	CATG	7 cut(s)	5, 104, 187, 493, 505, 744, 826
CviJI	RGCY	5 cut(s)	27, 61, 294, 343, 441
CviKI_1	RGCY	5 cut(s)	27, 61, 294, 343, 441
CviQI	GTAC	4 cut(s)	260, 288, 357, 890
DdeI	CTNAG	4 cut(s)	209, 309, 434, 848
DpnI	GATC	5 cut(s)	98, 114, 207, 484, 543
DpnII	GATC	5 cut(s)	96, 112, 205, 482, 541
DraI	TTTAAA	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	809
Eco130I	CCWWGG	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	61, 477
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	7 cut(s)	8, 107, 190, 496, 508, 747, 829
FaqI	GGGAC	2 cut(s)	139, 780
FatI	CATG	7 cut(s)	4, 103, 186, 492, 504, 743, 825
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	3 cut(s)	191, 439, 741
FokI	GGATG	3 cut(s)	192, 425, 605
Fsp4HI	GCNGC	3 cut(s)	191, 439, 741
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	3 cut(s)	191, 439, 741
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	2 cut(s)	222, 356
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	7 cut(s)	8, 107, 190, 496, 508, 747, 829
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	3 cut(s)	235, 313, 797
HpaII	CCGG	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	218, 667
Hpy188I	TCNGA	6 cut(s)	117, 210, 318, 526, 592, 711
Hpy188III	TCNNGA	6 cut(s)	44, 239, 335, 641, 694, 826
Hpy8I	GTNNAC	2 cut(s)	218, 667
HpyAV	CCTTC	2 cut(s)	95, 724
HpyCH4III	ACNGT	2 cut(s)	664, 868
HpyCH4IV	ACGT	3 cut(s)	70, 157, 892
HpyCH4V	TGCA	4 cut(s)	4, 134, 402, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 623, 746
HpyF3I	CTNAG	4 cut(s)	209, 309, 434, 848
HpySE526I	ACGT	3 cut(s)	70, 157, 892
Hsp92II	CATG	7 cut(s)	8, 107, 190, 496, 508, 747, 829
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	5 cut(s)	96, 112, 205, 482, 541
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	340, 416
Lsp1109I	GCAGC	3 cut(s)	177, 450, 727
LweI	GCATC	2 cut(s)	294, 463
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	3 cut(s)	70, 157, 892
MaeIII	GTNAC	4 cut(s)	488, 559, 658, 674
MalI	GATC	5 cut(s)	98, 114, 207, 484, 543
MboI	GATC	5 cut(s)	96, 112, 205, 482, 541
MboII	GAAGA	2 cut(s)	68, 863
MflI	RGATCY	3 cut(s)	96, 205, 482
MluCI	AATT	6 cut(s)	20, 319, 420, 604, 636, 811
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	2 cut(s)	178, 185
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	6 cut(s)	197, 392, 443, 467, 612, 919
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	63, 479
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	2 cut(s)	63, 479
MwoI	GCNNNNNNNGC	3 cut(s)	81, 623, 746
NdeII	GATC	5 cut(s)	96, 112, 205, 482, 541
NlaIII	CATG	7 cut(s)	8, 107, 190, 496, 508, 747, 829
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	488
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	190, 496, 747
PaeI	GCATGC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	884
PagI	TCATGA	1 cut(s)	825
PasI	CCCWGGG	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	313, 797
PkrI	GCNGC	3 cut(s)	192, 440, 742
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	893
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	61, 477
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	61, 477
PspN4I	GGNNCC	1 cut(s)	255
PspXI	VCTCGAGB	1 cut(s)	884
PsuI	RGATCY	3 cut(s)	96, 205, 482
RsaI	GTAC	4 cut(s)	261, 289, 358, 891
RsaNI	GTAC	4 cut(s)	260, 288, 357, 890
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	6 cut(s)	197, 392, 443, 467, 612, 919
SatI	GCNGC	3 cut(s)	191, 439, 741
Sau3AI	GATC	5 cut(s)	96, 112, 205, 482, 541
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	63, 479
SfaNI	GCATC	2 cut(s)	294, 463
Sfr274I	CTCGAG	1 cut(s)	884
SlaI	CTCGAG	1 cut(s)	884
SmiI	ATTTAAAT	1 cut(s)	468
SmlI	CTYRAG	3 cut(s)	263, 391, 884
SmoI	CTYRAG	3 cut(s)	263, 391, 884
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	6 cut(s)	20, 319, 420, 604, 636, 811
SsiI	CCGC	2 cut(s)	193, 820
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	61, 477
StyI	CCWWGG	1 cut(s)	450
SwaI	ATTTAAAT	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	664, 868
TaiI	ACGT	3 cut(s)	73, 160, 895
TaqI	TCGA	2 cut(s)	233, 885
TasI	AATT	6 cut(s)	20, 319, 420, 604, 636, 811
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	313, 797
Tru1I	TTAA	6 cut(s)	197, 392, 443, 467, 612, 919
Tru9I	TTAA	6 cut(s)	197, 392, 443, 467, 612, 919
TscAI	CASTG	2 cut(s)	253, 661
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	3 cut(s)	190, 438, 740
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	648, 842
TspRI	CASTG	2 cut(s)	253, 661
Vha464I	CTTAAG	1 cut(s)	391
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	3 cut(s)	604, 636, 811
XceI	RCATGY	3 cut(s)	190, 496, 747
XhoI	CTCGAG	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.