Rh4DG290700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000764
Physical Location & Seq
Forward (+)
51191560 .. 51194272
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG290700.1

Sequence Viewer

Length: 429 bp
ATGGAGGACGAAATGCAAAAAAAGAAAGCAAATCAGTCTCAAGAGGCATATGAGGAAGATGAGGACATGCATGATATTGATGTAGATGTTGAACAGGTACCAGAGGCCGAACAACGACCCGAGCTCGAGAGTCTTGAGCAAGTTGCTCTTAGGCTCGGCGGTCTCGTCGGAGCTCTCGGCAGTAGCAGCGACCTCGAAACTGCTCCGATTGAAGGCAAGAGAAGTCCAGGGCCTGAGATTGAAATCGGAGGAGGAGAGGGACCAGGATCGGCGAGTAAGAGCGGCGGAGAGGCGGTGAGAGAGAATCACATAGAGGAGATGACTTACGGCGATTTGAATGAGCTCGTCAAGGCCTTGGCTTGGATCGGGAAGCAGACGCGGCGAGGAGAGAAGAGAGGCGCGTGGACGACGATCCGTTGCACTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.49

Weight (kDa)

4.56

Isoelectric Point (pI)

71.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 282
AccII CGCG 2 cut(s) 379, 401
AciI CCGC 5 cut(s) 159, 282, 285, 293, 379
AclWI GGATC 3 cut(s) 274, 371, 406
AdeI CACNNNGTG 1 cut(s) 426
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 2 cut(s) 212, 360
AgsI TTSAA 4 cut(s) 92, 212, 242, 337
AjnI CCWGG 2 cut(s) 226, 262
AluBI AGCT 3 cut(s) 124, 173, 343
AluI AGCT 3 cut(s) 124, 173, 343
Alw21I GWGCWC 3 cut(s) 126, 175, 345
Alw26I GTCTC 2 cut(s) 42, 167
AlwI GGATC 3 cut(s) 274, 371, 406
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 2 cut(s) 119, 125
AoxI GGCC 3 cut(s) 105, 230, 351
ApeKI GCWGC 1 cut(s) 186
Asp718I GGTACC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 2 cut(s) 230, 260
AsuHPI GGTGA 1 cut(s) 307
AvaI CYCGRG 2 cut(s) 119, 125
AvaII GGWCC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 3 cut(s) 126, 175, 345
Bbv12I GWGCWC 3 cut(s) 126, 175, 345
BbvI GCAGC 1 cut(s) 198
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 2 cut(s) 228, 264
BcoDI GTCTC 2 cut(s) 42, 167
BisI GCNGC 3 cut(s) 187, 283, 380
BlsI GCNGC 3 cut(s) 188, 284, 381
Bme1390I CCNGG 2 cut(s) 228, 264
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 2 cut(s) 119, 125
BmgT120I GGNCC 2 cut(s) 230, 260
BmiI GGNNCC 2 cut(s) 99, 261
BmrFI CCNGG 2 cut(s) 228, 264
BpuEI CTTGAG 2 cut(s) 24, 155
BsaBI GATNNNNATC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 227, 354
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 360
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 2 cut(s) 228, 264
BseDI CCNNGG 2 cut(s) 227, 354
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 212, 360
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 4 cut(s) 264, 267, 329, 399
BseXI GCAGC 1 cut(s) 198
Bsh1236I CGCG 2 cut(s) 379, 401
BshFI GGCC 3 cut(s) 107, 232, 353
BshNI GGYRCC 1 cut(s) 97
BsiHKAI GWGCWC 3 cut(s) 126, 175, 345
BsiHKCI CYCGRG 2 cut(s) 119, 125
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 212, 360
BsmAI GTCTC 2 cut(s) 42, 167
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 3 cut(s) 107, 232, 353
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 2 cut(s) 119, 125
Bsp1286I GDGCHC 3 cut(s) 126, 175, 345
Bsp143I GATC 3 cut(s) 266, 363, 411
BspACI CCGC 5 cut(s) 159, 282, 285, 293, 379
BspANI GGCC 3 cut(s) 107, 232, 353
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 2 cut(s) 379, 401
BspLI GGNNCC 2 cut(s) 99, 261
BspPI GGATC 3 cut(s) 274, 371, 406
BspT107I GGYRCC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 227, 354
BssMI GATC 3 cut(s) 266, 363, 411
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 228, 264
Bst6I CTCTTC 1 cut(s) 386
BstDEI CTNAG 3 cut(s) 149, 234, 423
BstFNI CGCG 2 cut(s) 379, 401
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 3 cut(s) 269, 366, 414
BstMAI GTCTC 2 cut(s) 42, 167
BstMBI GATC 3 cut(s) 266, 363, 411
BstMWI GCNNNNNNNGC 2 cut(s) 186, 379
BstNI CCWGG 2 cut(s) 228, 264
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 226, 262
BstUI CGCG 2 cut(s) 379, 401
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 107, 232, 353
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 230, 260
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 98
CviAII CATG 2 cut(s) 67, 71
CviJI RGCY 8 cut(s) 107, 124, 154, 173, 232, 343, 353, 359
CviKI_1 RGCY 8 cut(s) 107, 124, 154, 173, 232, 343, 353, 359
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 3 cut(s) 149, 234, 423
DpnI GATC 3 cut(s) 268, 365, 413
DpnII GATC 3 cut(s) 266, 363, 411
DraIII CACNNNGTG 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 1 cut(s) 300
Ecl136II GAGCTC 3 cut(s) 124, 173, 343
Eco130I CCWWGG 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 353
Eco24I GRGCYC 3 cut(s) 126, 175, 345
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 3 cut(s) 124, 173, 343
Eco88I CYCGRG 2 cut(s) 119, 125
EcoICRI GAGCTC 3 cut(s) 124, 173, 343
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 226, 262
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 72
EcoT38I GRGCYC 3 cut(s) 126, 175, 345
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 70, 74
FaiI YATR 5 cut(s) 49, 51, 68, 72, 311
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 273
FatI CATG 2 cut(s) 66, 70
FauNDI CATATG 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 187, 283, 380
FriOI GRGCYC 3 cut(s) 126, 175, 345
Fsp4HI GCNGC 3 cut(s) 187, 283, 380
GlaI GCGC 1 cut(s) 400
GluI GCNGC 3 cut(s) 187, 283, 380
HaeIII GGCC 3 cut(s) 107, 232, 353
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 401
Hin1II CATG 2 cut(s) 70, 74
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HinfI GANTC 2 cut(s) 130, 304
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 3 cut(s) 170, 207, 248
Hpy188III TCNNGA 4 cut(s) 41, 127, 134, 367
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 2 cut(s) 170, 412
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 3 cut(s) 16, 70, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 379
HpyF3I CTNAG 3 cut(s) 149, 234, 423
Hsp92II CATG 2 cut(s) 70, 74
HspAI GCGC 1 cut(s) 399
KpnI GGTACC 1 cut(s) 101
Kzo9I GATC 3 cut(s) 266, 363, 411
LmnI GCTCC 2 cut(s) 170, 208
LpnPI CCDG 7 cut(s) 80, 114, 213, 240, 246, 249, 276
Lsp1109I GCAGC 1 cut(s) 198
MalI GATC 3 cut(s) 268, 365, 413
MbiI CCGCTC 1 cut(s) 282
MboI GATC 3 cut(s) 266, 363, 411
MboII GAAGA 2 cut(s) 68, 403
MhlI GDGCHC 3 cut(s) 126, 175, 345
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 72
MspR9I CCNGG 2 cut(s) 228, 264
MvaI CCWGG 2 cut(s) 228, 264
MvnI CGCG 2 cut(s) 379, 401
MwoI GCNNNNNNNGC 2 cut(s) 186, 379
NdeI CATATG 1 cut(s) 49
NdeII GATC 3 cut(s) 266, 363, 411
NlaIII CATG 2 cut(s) 70, 74
NlaIV GGNNCC 2 cut(s) 99, 261
NmeAIII GCCGAG 2 cut(s) 135, 156
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 125
PceI AGGCCT 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 3 cut(s) 188, 284, 381
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp124BI GAGCTC 3 cut(s) 126, 175, 345
Psp6I CCWGG 2 cut(s) 226, 262
PspGI CCWGG 2 cut(s) 226, 262
PspN4I GGNNCC 2 cut(s) 99, 261
PspPI GGNCC 2 cut(s) 230, 260
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SacI GAGCTC 3 cut(s) 126, 175, 345
SatI GCNGC 3 cut(s) 187, 283, 380
Sau3AI GATC 3 cut(s) 266, 363, 411
Sau96I GGNCC 2 cut(s) 230, 260
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 228, 264
SduI GDGCHC 3 cut(s) 126, 175, 345
SetI ASST 5 cut(s) 99, 126, 175, 195, 345
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 3 cut(s) 39, 125, 134
SmoI CTYRAG 3 cut(s) 39, 125, 134
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 5 cut(s) 159, 282, 285, 293, 379
SstI GAGCTC 3 cut(s) 126, 175, 345
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 226, 262
StyI CCWWGG 1 cut(s) 354
TaqI TCGA 2 cut(s) 126, 195
TauI GCSGC 2 cut(s) 285, 382
TfiI GAWTC 1 cut(s) 304
TseI GCWGC 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 260
XceI RCATGY 1 cut(s) 70
XhoI CTCGAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.