Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

6971396 .. 6971830

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12391.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACAGCTTGCTACAGGGCAAGGAACCTTGCCACTGCAGTTAACTTTGCCAGACGGTTATTGGAGACGAACCCCACTGTTGAGAATCAGAAAAAGTTAGCCAGGCAAGTGCTGCAGGCTGCAGAGAAGAATATGACTGATGCTTTTCAACTAACTATGACTTCAGAAATCCATTCGTCACTTGTGGGGCAACGTATGTACCAATTTACCGAGGACAGAAGGATGTCTCTTGCCCTTACTGTAGCTCACGGTTTGTGCCAAGCCAAGAAGGGAAGCTCTGTACTGTTTGTGATCTTGCAATGGTTGGCGCAGATGCTTCAGGGTTGCTATATTCTCCATCTCAGATTCGATAATCAGGCTGGACTAGGCGGATTCATCCTTTTGGCAGCAGATGCAGTCGTGTCGATGGATTTAAATCTGTCAGTAAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

9.22

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COPI_C	PF06957	1 - 52	4e-12	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	369
AcuI	CTGAAG	2 cut(s)	147, 302
AfaI	GTAC	2 cut(s)	200, 282
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	8, 245, 276
AluI	AGCT	3 cut(s)	8, 245, 276
Alw26I	GTCTC	2 cut(s)	59, 231
ApeKI	GCWGC	3 cut(s)	112, 119, 386
AspLEI	GCGC	1 cut(s)	310
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
BbvI	GCAGC	3 cut(s)	99, 106, 398
BccI	CCATC	2 cut(s)	345, 400
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	59, 231
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	5 cut(s)	13, 36, 113, 120, 240
BisI	GCNGC	3 cut(s)	113, 120, 387
BlsI	GCNGC	3 cut(s)	114, 121, 388
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	130, 303, 382
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	228, 375
BseJI	GATNNNNATC	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	99, 106, 398
BsmAI	GTCTC	2 cut(s)	59, 231
BsmBI	CGTCTC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	26
BspMAI	CTGCAG	3 cut(s)	40, 117, 124
BsrDI	GCAATG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	5 cut(s)	57, 79, 241, 251, 285
BstAPI	GCANNNNNTGC	2 cut(s)	112, 392
BstC8I	GCNNGC	2 cut(s)	10, 117
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	228, 375
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	59, 231
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 392
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	5 cut(s)	13, 36, 113, 120, 240
BstV1I	GCAGC	3 cut(s)	99, 106, 398
BtsCI	GGATG	2 cut(s)	228, 375
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 75
Cac8I	GCNNGC	2 cut(s)	10, 117
CfoI	GCGC	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	199, 281
CviJI	RGCY	7 cut(s)	8, 101, 119, 245, 263, 276, 359
CviKI_1	RGCY	7 cut(s)	8, 101, 119, 245, 263, 276, 359
CviQI	GTAC	2 cut(s)	199, 281
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
DraI	TTTAAA	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	384
Eco57I	CTGAAG	2 cut(s)	147, 302
EcoRII	CCWGG	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	59
FaiI	YATR	4 cut(s)	134, 158, 197, 330
Fnu4HI	GCNGC	3 cut(s)	113, 120, 387
FokI	GGATG	2 cut(s)	235, 362
Fsp4HI	GCNGC	3 cut(s)	113, 120, 387
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	3 cut(s)	113, 120, 387
HhaI	GCGC	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	3 cut(s)	85, 345, 372
HpaI	GTTAAC	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	90, 166, 344
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	213, 262
HpyCH4III	ACNGT	5 cut(s)	57, 79, 241, 251, 285
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	5 cut(s)	38, 115, 122, 298, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 392
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	193
HspAI	GCGC	1 cut(s)	308
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	291
LpnPI	CCDG	7 cut(s)	64, 88, 101, 115, 305, 341, 345
Lsp1109I	GCAGC	3 cut(s)	99, 106, 398
LweI	GCATC	3 cut(s)	130, 303, 382
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	2 cut(s)	203, 427
MnlI	CCTC	1 cut(s)	205
MseI	TTAA	2 cut(s)	42, 413
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	112, 392
NdeII	GATC	1 cut(s)	291
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	85, 345, 372
PkrI	GCNGC	3 cut(s)	114, 121, 388
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	26
PstI	CTGCAG	3 cut(s)	40, 117, 124
RsaI	GTAC	2 cut(s)	200, 282
RsaNI	GTAC	2 cut(s)	199, 281
SaqAI	TTAA	2 cut(s)	42, 413
SatI	GCNGC	3 cut(s)	113, 120, 387
Sau3AI	GATC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	5 cut(s)	10, 30, 196, 247, 278
SfaNI	GCATC	3 cut(s)	130, 303, 382
SfcI	CTRYAG	5 cut(s)	13, 36, 113, 120, 240
SmiI	ATTTAAAT	1 cut(s)	414
Sse9I	AATT	2 cut(s)	203, 427
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	101
SwaI	ATTTAAAT	1 cut(s)	414
TaaI	ACNGT	5 cut(s)	57, 79, 241, 251, 285
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	348, 404
TasI	AATT	2 cut(s)	203, 427
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	85, 345, 372
Tru1I	TTAA	2 cut(s)	42, 413
Tru9I	TTAA	2 cut(s)	42, 413
TscAI	CASTG	2 cut(s)	40, 82
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	3 cut(s)	112, 119, 386
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	364
TspRI	CASTG	2 cut(s)	40, 82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.