Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34333685 .. 34336855

Gene Structure 3171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1251000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGTGTGGTCATCTTGCTGTACCTCGCCCGATGTATCCGTTAGAAATGGTGTGGAATTCCAAGTTGCATAGGTGTTTGTTTACACTTCTTGGACACATTGATTACATCCGAACTGTTCAATTCCATCATGAGTACCCTTGGATTGTCAGTGCAAGTGATGACCAGACAATCAGAATATGGAATTGGCAGTCCCGAACTTGTATTTCTGTGCTCACTGGACACAACCATTACGTCATGTGTGCCTTATTCCATCCAAAGGAGGATCTTGTTGACTCAGCATCGTTGGATCAAACTGTTCGTGTTTGGGATATTGGTGCCCTCAGGAAAAAGACGGTTGCCCCAGCAGATGACATTCTACGCTTGAGTCAGATGAATGCAGATTTCTTTGGTGGAGTTGATGCTGTTGTGAAGTATGTTTTGGAAGGTCATGATCGGGGTGTGAATTGGGCATCATTTCATCCTACACTCCCTCTAATCGTCTCTGGAGCAGACGATCGACAAGTGAAACTTTGGCGGATGAATGATACAAAGGCTTGGGAAGTGGACACTCTAAGGGGGCACATGAACAATGTATCCTGTGTTCTATTCCATTCAAGGCAGGATATTATTGTGTCCAATTCAGAGGATAGAAGTATCCGAGTCTGGGATGCAACAAAACGGACTGGTCTTCAGACATTTCGCAGGGAGCATGATAGATTCTGGATTCTTTCAGCACATCCTGAAATGAACCTCTTGGCTGCTGGCCATGATAGTGGCATGATTGTCTTTAAATTGGAGAGGGAGCGTCCTGCCTTTTCTGTTAGCGGTGATTCAATGTACTATGTTAAAGATCGTGGTTCTTCCAACTTGAATCAAGGGGCAAAGACACTATCTTACAGCCCCACAGAAAATGCTGCTTTGATATGTTCAGATATGGAAGGGGGGTCTTATGAACTATACGTTATACCCAAAGATAGCTTTGGTCGGGGTGATACTGCGCAGGAGGCAAAAAGAGGAATTGGAGGCCCTACCTATTCAGAGAATTATTGTTGGGGAGCTAGGGATGACAATGGCGTCTTCATATATACAACCTTGAACCACAGCAAATACTGCCTTCCTAATGGGGATAGTAGAATCATCAGGACCCTCGACGCTCCTGTATATATAACAAAAGTGTATGGAAACACCATACATTGCTTGGGTCGAGATGGGAAGAACTGTGCCATTGTTGTTGATGCAACAGAATATGTTTTCAAGTTATCCTTTACTGAAGAAGAGGATGAGAGGACTCGCTTCAACTTGGCACTAGGAAGCGGGAACATCCAGATTGCTGTTGCTTCTGCCAAGGAAATTGATGAGAAAGATCACTGGTATCGATTGGGAGTGGAGGCCCTTCGTCAGGGTAATGCAGGCATTGTAGAATATGCATATCAGAGGACAAAGAATTTTGAGAGGCTATCATTCTTATATCTTGTGACTGGAAACTTGGATAAATTGTCCAAAATGTTGAAAATTGCTGAAGTCAAGAATGATGTGATGGGCCAGTTCCACAATGCTTTGTATTTGGGTGACATCAGAGAGCGTGTTAAGATCTTGGAGAATGCAGGTCATTTACCTCTTGCTTATAGCACAGCTGTAATTCATGGGCTCCATGATATTGCCGAACGTTTGGCGGCTGAACTGGGAGATAATGTTCCTGTTTTACCCAAGGTGAAATCTCCGTCCCTTTTGTTACCACCAACGCCAATCATCTGCGGAGGAGATTGGCCTTTAAACCCATTTGTGGTTTGTGGGGCAACATATGTGCCTATTTACCGTGGACAGAAGGATGTGTCATGCCCATACTGCAGTTCTCGGTTTGTTCCGGACCAGGAAGGGAAGCTCTGTACTGTTTGTGATCTTTCAGTGGTTGGATCAGATGCATCTGGTTTGCTCTGTTCTCCTACCCAGATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

646

Amino Acids

72.41

Weight (kDa)

6.35

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	16 - 104	1e-16	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	17 - 106	1.3e-23	WDR5 beta-propeller domain
WD40_Prp19	PF24814	17 - 107	3.6e-14	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	17 - 177	2.5e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	24 - 61	3.4e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	25 - 103	1.3e-07	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	27 - 106	4.3e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	33 - 107	3.4e-13	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	35 - 106	2.8e-11	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	37 - 105	1e-05	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	66 - 103	4e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	125 - 245	1.2e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	135 - 254	1.6e-17	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	136 - 248	8.9e-21	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	136 - 257	1.3e-18	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	137 - 232	3e-07	TEP-1 second beta-propeller
WD40	PF00400	138 - 171	1.4e-06	WD domain, G-beta repeat
EIF3I	PF24805	139 - 227	5.6e-06	EIF3I
Beta-prop_WDR3_2nd	PF25172	142 - 252	2e-09	WDR3 second beta-propeller domain
WDR55	PF24796	147 - 255	3.6e-09	WDR55
Beta-prop_THOC3	PF25174	147 - 256	9.8e-15	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	151 - 227	2.6e-09	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	152 - 258	7.3e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	163 - 260	2.6e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	181 - 216	4e-07	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	348 - 393	1.9e-10	COPA/B second beta-propeller
TPR_COPA_B	PF23953	419 - 535	1.1e-13	COPA/B TPR domain
COPI_C	PF06957	585 - 645	2.1e-26	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1052
Acc16I	TGCGCA	1 cut(s)	978
Acc36I	ACCTGC	1 cut(s)	1574
AccB1I	GGYRCC	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	1843
AciI	CCGC	5 cut(s)	514, 804, 1293, 1652, 1734
AclI	AACGTT	1 cut(s)	1645
AclWI	GGATC	3 cut(s)	270, 294, 1900
AcoI	YGGCCR	1 cut(s)	742
AcsI	RAATTY	2 cut(s)	55, 1423
AcuI	CTGAAG	3 cut(s)	653, 1269, 1518
AcyI	GRCGYC	1 cut(s)	1053
AfaI	GTAC	4 cut(s)	21, 134, 818, 1867
AfiI	CCNNNNNNNGG	4 cut(s)	256, 643, 1378, 1762
AgsI	TTSAA	8 cut(s)	119, 594, 813, 850, 1075, 1234, 1276, 1489
AjnI	CCWGG	1 cut(s)	1848
AjuI	GAANNNNNNNTTGG	4 cut(s)	166, 198, 401, 433
AloI	GAACNNNNNNTCC	4 cut(s)	557, 589, 1656, 1688
AluBI	AGCT	4 cut(s)	957, 1037, 1613, 1861
AluI	AGCT	4 cut(s)	957, 1037, 1613, 1861
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	3 cut(s)	270, 294, 1900
Aor13HI	TCCGGA	1 cut(s)	1843
AoxI	GGCC	5 cut(s)	742, 1003, 1368, 1519, 1745
ApeKI	GCWGC	2 cut(s)	737, 893
ApoI	RAATTY	2 cut(s)	55, 1423
AspLEI	GCGC	1 cut(s)	979
AspS9I	GGNCC	5 cut(s)	1004, 1122, 1369, 1519, 1846
AsuHPI	GGTGA	4 cut(s)	818, 980, 1559, 1702
AvaII	GGWCC	2 cut(s)	1122, 1846
AxyI	CCTNAGG	1 cut(s)	320
BaeGI	GKGCMC	2 cut(s)	319, 561
BalI	TGGCCA	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	1629
BbsI	GAAGAC	2 cut(s)	659, 1048
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	724, 880
BccI	CCATC	4 cut(s)	132, 258, 1181, 1510
BciT130I	CCWGG	1 cut(s)	1850
BciVI	GTATCC	3 cut(s)	45, 583, 644
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	1038, 1286
BfmI	CTRYAG	1 cut(s)	1825
BfuAI	ACCTGC	1 cut(s)	1574
BfuI	GTATCC	3 cut(s)	45, 583, 644
BglII	AGATCT	1 cut(s)	1569
BisI	GCNGC	3 cut(s)	738, 894, 1653
BlsI	GCNGC	3 cut(s)	739, 895, 1654
Bme1390I	CCNGG	1 cut(s)	1850
Bme18I	GGWCC	2 cut(s)	1122, 1846
BmgT120I	GGNCC	5 cut(s)	1004, 1122, 1369, 1519, 1846
BmiI	GGNNCC	3 cut(s)	316, 1124, 1628
BmrFI	CCNGG	1 cut(s)	1850
BmrI	ACTGGG	1 cut(s)	1670
BmsI	GCATC	7 cut(s)	287, 388, 458, 637, 1204, 1888, 1910
BmuI	ACTGGG	1 cut(s)	1670
BpiI	GAAGAC	2 cut(s)	659, 1048
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	382
Bsa29I	ATCGAT	1 cut(s)	1354
BsaHI	GRCGYC	1 cut(s)	1053
BsaJI	CCNNGG	4 cut(s)	137, 1323, 1686, 1795
BsaWI	WCCGGW	1 cut(s)	1843
BsaXI	ACNNNNNCTCC	2 cut(s)	1656, 1686
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 643, 1378, 1762
Bse1I	ACTGG	6 cut(s)	220, 667, 1352, 1462, 1522, 1665
Bse21I	CCTNAGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	1171
BseAI	TCCGGA	1 cut(s)	1843
BseBI	CCWGG	1 cut(s)	1850
BseCI	ATCGAT	1 cut(s)	1354
BseDI	CCNNGG	4 cut(s)	137, 1323, 1686, 1795
BseLI	CCNNNNNNNGG	4 cut(s)	256, 643, 1378, 1762
BseMI	GCAATG	1 cut(s)	1171
BseMII	CTCAG	2 cut(s)	288, 334
BseNI	ACTGG	6 cut(s)	220, 667, 1352, 1462, 1522, 1665
BseRI	GAGGAG	1 cut(s)	1752
BseSI	GKGCMC	2 cut(s)	319, 561
BseXI	GCAGC	2 cut(s)	724, 880
BseYI	CCCAGC	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	5 cut(s)	744, 1005, 1370, 1521, 1747
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	1354
BsiEI	CGRYCG	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	1844
BslFI	GGGAC	2 cut(s)	175, 1687
BslI	CCNNNNNNNGG	4 cut(s)	256, 643, 1378, 1762
BsmAI	GTCTC	1 cut(s)	484
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	2 cut(s)	175, 1687
BsmI	GAATGC	2 cut(s)	379, 1585
BsnI	GGCC	5 cut(s)	744, 1005, 1370, 1521, 1747
Bsp1286I	GDGCHC	4 cut(s)	213, 319, 561, 1629
Bsp13I	TCCGGA	1 cut(s)	1843
Bsp143I	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
BspACI	CCGC	5 cut(s)	514, 804, 1293, 1652, 1734
BspANI	GGCC	5 cut(s)	744, 1005, 1370, 1521, 1747
BspCNI	CTCAG	2 cut(s)	287, 333
BspDI	ATCGAT	1 cut(s)	1354
BspEI	TCCGGA	1 cut(s)	1843
BspHI	TCATGA	2 cut(s)	127, 427
BspLI	GGNNCC	3 cut(s)	316, 1124, 1628
BspMAI	CTGCAG	1 cut(s)	1829
BspMI	ACCTGC	1 cut(s)	1574
BspPI	GGATC	3 cut(s)	270, 294, 1900
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	1171
BsrI	ACTGG	6 cut(s)	220, 667, 1352, 1462, 1522, 1665
BssECI	CCNNGG	4 cut(s)	137, 1323, 1686, 1795
BssMI	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
BssNI	GRCGYC	1 cut(s)	1053
BssT1I	CCWWGG	3 cut(s)	137, 1323, 1686
Bst2UI	CCWGG	1 cut(s)	1850
Bst4CI	ACNGT	6 cut(s)	115, 295, 334, 1199, 1796, 1870
Bst6I	CTCTTC	1 cut(s)	1248
BstACI	GRCGYC	1 cut(s)	1053
BstAPI	GCANNNNNTGC	1 cut(s)	1089
BstC8I	GCNNGC	2 cut(s)	742, 1390
BstDEI	CTNAG	3 cut(s)	274, 320, 551
BstDSI	CCRYGG	1 cut(s)	1795
BstENI	CCTNNNNNAGG	1 cut(s)	1376
BstHHI	GCGC	1 cut(s)	979
BstKTI	GATC	9 cut(s)	265, 289, 433, 496, 832, 1345, 1572, 1879, 1895
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	3 cut(s)	983, 1089, 1824
BstNI	CCWGG	1 cut(s)	1850
BstSCI	CCNGG	1 cut(s)	1848
BstSFI	CTRYAG	1 cut(s)	1825
BstSLI	GKGCMC	2 cut(s)	319, 561
BstV1I	GCAGC	2 cut(s)	724, 880
BstV2I	GAAGAC	2 cut(s)	659, 1048
BstX2I	RGATCY	2 cut(s)	262, 1569
BstXI	CCANNNNNNTGG	1 cut(s)	752
BstYI	RGATCY	2 cut(s)	262, 1569
Bsu15I	ATCGAT	1 cut(s)	1354
Bsu36I	CCTNAGG	1 cut(s)	320
BsuI	GTATCC	3 cut(s)	45, 583, 644
BsuRI	GGCC	5 cut(s)	744, 1005, 1370, 1521, 1747
BsuTUI	ATCGAT	1 cut(s)	1354
BtgI	CCRYGG	1 cut(s)	1795
BtsIMutI	CAGTG	4 cut(s)	154, 213, 1345, 1890
BveI	ACCTGC	1 cut(s)	1574
Cac8I	GCNNGC	2 cut(s)	742, 1390
CciI	TCATGA	2 cut(s)	127, 427
CfoI	GCGC	1 cut(s)	979
Cfr13I	GGNCC	5 cut(s)	1004, 1122, 1369, 1519, 1846
ClaI	ATCGAT	1 cut(s)	1354
CseI	GACGC	3 cut(s)	773, 1042, 1139
Csp6I	GTAC	4 cut(s)	20, 133, 817, 1866
CviQI	GTAC	4 cut(s)	20, 133, 817, 1866
DdeI	CTNAG	3 cut(s)	274, 320, 551
DpnI	GATC	9 cut(s)	264, 288, 432, 495, 831, 1344, 1571, 1878, 1894
DpnII	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
DraI	TTTAAA	2 cut(s)	769, 1752
DrdI	GACNNNNNNGTC	1 cut(s)	1052
DseDI	GACNNNNNNGTC	1 cut(s)	1052
EaeI	YGGCCR	1 cut(s)	742
Eam1104I	CTCTTC	1 cut(s)	1248
EarI	CTCTTC	1 cut(s)	1248
EciI	GGCGGA	1 cut(s)	529
Eco130I	CCWWGG	3 cut(s)	137, 1323, 1686
Eco24I	GRGCYC	1 cut(s)	1629
Eco47I	GGWCC	2 cut(s)	1122, 1846
Eco57I	CTGAAG	3 cut(s)	653, 1269, 1518
Eco81I	CCTNAGG	1 cut(s)	320
EcoNI	CCTNNNNNAGG	1 cut(s)	1376
EcoO109I	RGGNCCY	3 cut(s)	1004, 1122, 1369
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	1848
EcoT14I	CCWWGG	3 cut(s)	137, 1323, 1686
EcoT22I	ATGCAT	2 cut(s)	1408, 1903
EcoT38I	GRGCYC	1 cut(s)	1629
ErhI	CCWWGG	3 cut(s)	137, 1323, 1686
Esp3I	CGTCTC	1 cut(s)	484
FalI	AAGNNNNNCTT	4 cut(s)	492, 524, 1226, 1258
FaqI	GGGAC	2 cut(s)	175, 1687
FauI	CCCGC	1 cut(s)	1286
FauNDI	CATATG	1 cut(s)	1780
Fnu4HI	GCNGC	3 cut(s)	738, 894, 1653
FriOI	GRGCYC	1 cut(s)	1629
Fsp4HI	GCNGC	3 cut(s)	738, 894, 1653
FspBI	CTAG	2 cut(s)	1038, 1286
FspI	TGCGCA	1 cut(s)	978
GlaI	GCGC	1 cut(s)	978
GluI	GCNGC	3 cut(s)	738, 894, 1653
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	5 cut(s)	744, 1005, 1370, 1521, 1747
HapII	CCGG	1 cut(s)	1844
HgaI	GACGC	3 cut(s)	773, 1042, 1139
HhaI	GCGC	1 cut(s)	979
Hin1I	GRCGYC	1 cut(s)	1053
Hin6I	GCGC	1 cut(s)	977
HinP1I	GCGC	1 cut(s)	977
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	9 cut(s)	272, 364, 639, 696, 703, 809, 850, 1113, 1267
HpaII	CCGG	1 cut(s)	1844
HphI	GGTGA	4 cut(s)	818, 980, 1559, 1702
Hpy166II	GTNNAC	4 cut(s)	81, 271, 544, 1799
Hpy8I	GTNNAC	4 cut(s)	81, 271, 544, 1799
Hpy99I	CGWCG	1 cut(s)	1133
HpyAV	CCTTC	6 cut(s)	416, 911, 1103, 1382, 1798, 1847
HpyCH4III	ACNGT	6 cut(s)	115, 295, 334, 1199, 1796, 1870
HpyCH4IV	ACGT	3 cut(s)	231, 939, 1645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	983, 1089, 1824
HpyF3I	CTNAG	3 cut(s)	274, 320, 551
HpySE526I	ACGT	3 cut(s)	231, 939, 1645
Hsp92I	GRCGYC	1 cut(s)	1053
HspAI	GCGC	1 cut(s)	977
Kpn2I	TCCGGA	1 cut(s)	1843
Kzo9I	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
LmnI	GCTCC	6 cut(s)	485, 685, 781, 1034, 1138, 1632
Lsp1109I	GCAGC	2 cut(s)	724, 880
LweI	GCATC	7 cut(s)	287, 388, 458, 637, 1204, 1888, 1910
MaeI	CTAG	2 cut(s)	1038, 1286
MaeII	ACGT	3 cut(s)	231, 939, 1645
MaeIII	GTNAC	3 cut(s)	1453, 1547, 1710
MalI	GATC	9 cut(s)	264, 288, 432, 495, 831, 1344, 1571, 1878, 1894
MboI	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
MboII	GAAGA	6 cut(s)	659, 831, 1048, 1204, 1262, 1265
MflI	RGATCY	2 cut(s)	262, 1569
MhlI	GDGCHC	4 cut(s)	213, 319, 561, 1629
MlsI	TGGCCA	1 cut(s)	744
MluNI	TGGCCA	1 cut(s)	744
MlyI	GAGTC	4 cut(s)	266, 373, 648, 1261
MmeI	TCCRAC	3 cut(s)	264, 867, 1870
Mox20I	TGGCCA	1 cut(s)	744
Mph1103I	ATGCAT	2 cut(s)	1408, 1903
MroI	TCCGGA	1 cut(s)	1843
MscI	TGGCCA	1 cut(s)	744
MseI	TTAA	4 cut(s)	768, 825, 1566, 1751
MslI	CAYNNNNRTG	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	1613
MspI	CCGG	1 cut(s)	1844
MspR9I	CCNGG	1 cut(s)	1850
Mva1269I	GAATGC	2 cut(s)	379, 1585
MvaI	CCWGG	1 cut(s)	1850
MwoI	GCNNNNNNNGC	3 cut(s)	983, 1089, 1824
NdeI	CATATG	1 cut(s)	1780
NdeII	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
NlaIV	GGNNCC	3 cut(s)	316, 1124, 1628
NmuCI	GTSAC	2 cut(s)	1453, 1547
NsbI	TGCGCA	1 cut(s)	978
NsiI	ATGCAT	2 cut(s)	1408, 1903
PagI	TCATGA	2 cut(s)	127, 427
PctI	GAATGC	2 cut(s)	379, 1585
PfeI	GAWTC	5 cut(s)	696, 703, 809, 850, 1113
PkrI	GCNGC	3 cut(s)	739, 895, 1654
Ple19I	CGATCG	1 cut(s)	496
PleI	GAGTC	4 cut(s)	266, 372, 647, 1261
PpsI	GAGTC	4 cut(s)	266, 372, 647, 1261
PpuMI	RGGWCCY	1 cut(s)	1122
Psp1406I	AACGTT	1 cut(s)	1645
Psp5II	RGGWCCY	1 cut(s)	1122
Psp6I	CCWGG	1 cut(s)	1848
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	1848
PspN4I	GGNNCC	3 cut(s)	316, 1124, 1628
PspPI	GGNCC	5 cut(s)	1004, 1122, 1369, 1519, 1846
PspPPI	RGGWCCY	1 cut(s)	1122
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
PstI	CTGCAG	1 cut(s)	1829
PsuI	RGATCY	2 cut(s)	262, 1569
PvuI	CGATCG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	1613
RsaI	GTAC	4 cut(s)	21, 134, 818, 1867
RsaNI	GTAC	4 cut(s)	20, 133, 817, 1866
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	768, 825, 1566, 1751
SatI	GCNGC	3 cut(s)	738, 894, 1653
Sau3AI	GATC	9 cut(s)	262, 286, 430, 493, 829, 1342, 1569, 1876, 1892
Sau96I	GGNCC	5 cut(s)	1004, 1122, 1369, 1519, 1846
SchI	GAGTC	4 cut(s)	266, 373, 648, 1261
ScrFI	CCNGG	1 cut(s)	1850
SduI	GDGCHC	4 cut(s)	213, 319, 561, 1629
SfaNI	GCATC	7 cut(s)	287, 388, 458, 637, 1204, 1888, 1910
SfcI	CTRYAG	1 cut(s)	1825
SinI	GGWCC	2 cut(s)	1122, 1846
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
SsiI	CCGC	5 cut(s)	514, 804, 1293, 1652, 1734
SspMI	CTAG	2 cut(s)	1038, 1286
StyD4I	CCNGG	1 cut(s)	1848
StyI	CCWWGG	3 cut(s)	137, 1323, 1686
TaaI	ACNGT	6 cut(s)	115, 295, 334, 1199, 1796, 1870
TaiI	ACGT	3 cut(s)	234, 942, 1648
TaqI	TCGA	4 cut(s)	496, 1128, 1183, 1354
TatI	WGTACW	2 cut(s)	816, 1865
TauI	GCSGC	1 cut(s)	1655
TfiI	GAWTC	5 cut(s)	696, 703, 809, 850, 1113
Tru1I	TTAA	4 cut(s)	768, 825, 1566, 1751
Tru9I	TTAA	4 cut(s)	768, 825, 1566, 1751
TscAI	CASTG	4 cut(s)	154, 220, 1352, 1890
TseFI	GTSAC	2 cut(s)	1453, 1547
TseI	GCWGC	2 cut(s)	737, 893
Tsp45I	GTSAC	2 cut(s)	1453, 1547
TspDTI	ATGAA	8 cut(s)	386, 446, 533, 578, 740, 945, 1048, 1610
TspGWI	ACGGA	3 cut(s)	27, 673, 1689
TspRI	CASTG	4 cut(s)	154, 220, 1352, 1890
VpaK11BI	GGWCC	2 cut(s)	1122, 1846
XagI	CCTNNNNNAGG	1 cut(s)	1376
XapI	RAATTY	2 cut(s)	55, 1423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1174
XspI	CTAG	2 cut(s)	1038, 1286
Zsp2I	ATGCAT	2 cut(s)	1408, 1903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.