Rmu_sc0007192.1_g000011

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007192.1
OG0000764
Physical Location & Seq
Reverse (-)
48743 .. 52375
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007192.1_g000011.1.cds

Sequence Viewer

Length: 1647 bp
ctggcggcggcgatcttccctcaagcaaggctatctttcctcaggcaaggcgacgatcatggagtgacaagatgcgacggcgcggagcggggcctcggcgttgatcgtgagtggcggcgcgaggtttctaggttggaggcctcactgatcgtgttttttgctgggttagatccggtcctcgagcgccgtgcagcttcgacggaggtggttgttggctctgatagcggtagtagacgaggctggtggctaggatgtgtagattggtgcttcgatttgggctgtgttcacccagacgtcgatggacggtttgatgatgtgggtaggaaggccgccggaaatggcagtggtggaggcggagtggcaaaagaggatggactggaatgtttctcccttgtgaacttggatttggggaagacgacaggctgggtcgatgacactggagccagtgacttctctggcagtggggatgtcgaagtggaaattgaagcaggtcggggttgtccatatccaaacaatggaaatgttcaaattgttgttgaatctgctacaacaattgatgaacaagattactggtatagttctggagtagaggctcttcgacaaggcaatgctggtattgtaactactttgaatgacttgttgaatggtaatactttttgcttacctcttaagaataaattggagaaagtgagtttgcctcttactgataagttggagaaaatggacaaaattgtgaaaatgatgtttgataacaaatatctgattgctacaactgaacagccactttgtgcatatcatgtgaactctgaggaattttatcagcagttcaaacccccttatcatgctgtgtccatcgtttctggtgctttaaatgatgcagtcaatgaatttgttacacaaaattttgcattcactatgtgtggtatgtattctttaacaggacaaacagagtgcgtagattctttgtcaagtatgttaggtgtctgtgccaaaggatgcggcgagtttgatgttaaggagcatagtgatggaaatgggcatccaaaacttgagcactatcaggatgctgccataattaagacatcggaaagggacttgcttggtgacataattaagatattattatatgtgataagtgagatcattcaagtggctcctgataatttggatagtttctctacttattggccacctagcagatatgatatagatacaagtgcaagtgcggagctgtcaaatgagaactgtaataactctctagaagatatctgtgttattgctagacttgttcttggtttggcgagttctgttggtacaatgtacagagatggggcgcatgttgttattttcaagataaaagatgtcatggtatcatgggttccgtataagaatagactggttaaaggctcctttcatcatcttctgcaatggggtatcacattgttcatcttctaccttgagtttgtctctactacctccatttatggttgcttcttgtataacaagttgggggctgcttttgacaatacgatggctttccagctgatcagcattgttgattttgctcttggaacttctctcactacttctgcagagagtttacacagcatgaggacatgccttgagttaaggggatgggattgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

548

Amino Acids

60.18

Weight (kDa)

4.75

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
Acc36I ACCTGC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 515
AccBSI CCGCTC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 232
AccII CGCG 2 cut(s) 83, 120
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 1187
AcsI RAATTY 3 cut(s) 812, 887, 901
AcyI GRCGYC 1 cut(s) 294
AdeI CACNNNGTG 2 cut(s) 788, 918
AfaI GTAC 2 cut(s) 1315, 1322
AfiI CCNNNNNNNGG 1 cut(s) 515
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 8 cut(s) 485, 527, 539, 631, 643, 829, 1148, 1351
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 3 cut(s) 194, 1231, 1543
AluI AGCT 3 cut(s) 194, 1231, 1543
Alw21I GWGCWC 1 cut(s) 1056
Alw26I GTCTC 1 cut(s) 1471
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 4 cut(s) 91, 138, 327, 1187
ApeKI GCWGC 3 cut(s) 191, 1067, 1514
ApoI RAATTY 3 cut(s) 812, 887, 901
AspLEI GCGC 4 cut(s) 83, 120, 186, 1336
AspS9I GGNCC 2 cut(s) 91, 175
AsuHPI GGTGA 2 cut(s) 278, 1115
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 41
BalI TGGCCA 1 cut(s) 1189
BarI GAAGNNNNNNTAC 2 cut(s) 579, 611
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 1056
BbvI GCAGC 3 cut(s) 203, 1054, 1501
BccI CCATC 7 cut(s) 293, 365, 860, 1022, 1322, 1525, 1629
BceAI ACGGC 2 cut(s) 94, 171
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BclI TGATCA 1 cut(s) 1545
BcoDI GTCTC 1 cut(s) 1471
BfaI CTAG 5 cut(s) 129, 248, 1194, 1259, 1281
BfmI CTRYAG 1 cut(s) 1590
BfoI RGCGCY 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 479
BisI GCNGC 8 cut(s) 6, 9, 116, 192, 330, 1000, 1068, 1515
BlsI GCNGC 8 cut(s) 7, 10, 117, 193, 331, 1001, 1069, 1516
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 91, 175
BmiI GGNNCC 5 cut(s) 92, 442, 1155, 1380, 1408
BmsI GCATC 5 cut(s) 62, 865, 986, 1048, 1054
BpiI GAAGAC 1 cut(s) 419
BplI GAGNNNNNCTC 4 cut(s) 682, 714, 1451, 1483
BpmI CTGGAG 2 cut(s) 459, 603
BpuEI CTTGAG 4 cut(s) 6, 1070, 1478, 1643
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 5 cut(s) 381, 442, 444, 575, 1401
Bse21I CCTNAGG 1 cut(s) 41
Bse3DI GCAATG 2 cut(s) 613, 1433
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 7 cut(s) 257, 376, 472, 1001, 1039, 1069, 1640
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 2 cut(s) 613, 1433
BseMII CTCAG 2 cut(s) 55, 798
BseNI ACTGG 5 cut(s) 381, 442, 444, 575, 1401
BseXI GCAGC 3 cut(s) 203, 1054, 1501
BseYI CCCAGC 2 cut(s) 161, 423
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 2 cut(s) 83, 120
BshFI GGCC 4 cut(s) 93, 140, 329, 1189
BsiHKAI GWGCWC 1 cut(s) 1056
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 173, 333
BslFI GGGAC 1 cut(s) 1106
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 1471
BsmFI GGGAC 1 cut(s) 1106
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 4 cut(s) 93, 140, 329, 1189
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 1056
Bsp1407I TGTACA 1 cut(s) 1320
Bsp143I GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
BspANI GGCC 4 cut(s) 93, 140, 329, 1189
BspCNI CTCAG 2 cut(s) 54, 799
BspFNI CGCG 2 cut(s) 83, 120
BspLI GGNNCC 5 cut(s) 92, 442, 1155, 1380, 1408
BspMAI CTGCAG 1 cut(s) 1594
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 600
BspTI CTTAAG 1 cut(s) 668
BsrBI CCGCTC 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 613, 1433
BsrGI TGTACA 1 cut(s) 1320
BsrI ACTGG 5 cut(s) 381, 442, 444, 575, 1401
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
BssNI GRCGYC 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 306, 1247
Bst6I CTCTTC 1 cut(s) 600
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 1320
BstDEI CTNAG 2 cut(s) 41, 807
BstF5I GGATG 7 cut(s) 257, 376, 472, 1001, 1039, 1069, 1640
BstFNI CGCG 2 cut(s) 83, 120
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 4 cut(s) 83, 120, 186, 1336
BstKTI GATC 7 cut(s) 15, 58, 106, 150, 172, 1143, 1548
BstMAI GTCTC 1 cut(s) 1471
BstMBI GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 1340, 1620
BstSFI CTRYAG 1 cut(s) 1590
BstUI CGCG 2 cut(s) 83, 120
BstV1I GCAGC 3 cut(s) 203, 1054, 1501
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 4 cut(s) 93, 140, 329, 1189
BtsCI GGATG 7 cut(s) 257, 376, 472, 1001, 1039, 1069, 1640
BtsI GCAGTG 2 cut(s) 349, 466
BtsIMutI CAGTG 5 cut(s) 143, 349, 435, 451, 466
BveI ACCTGC 1 cut(s) 479
CfoI GCGC 4 cut(s) 83, 120, 186, 1336
Cfr13I GGNCC 2 cut(s) 91, 175
Csp6I GTAC 2 cut(s) 1314, 1321
CviAII CATG 8 cut(s) 59, 797, 842, 1337, 1366, 1374, 1609, 1617
CviQI GTAC 2 cut(s) 1314, 1321
DdeI CTNAG 2 cut(s) 41, 807
DpnI GATC 7 cut(s) 14, 57, 105, 149, 171, 1142, 1547
DpnII GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
DraI TTTAAA 1 cut(s) 870
DraIII CACNNNGTG 2 cut(s) 788, 918
EaeI YGGCCR 1 cut(s) 1187
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 140
Eco32I GATATC 1 cut(s) 1267
Eco47I GGWCC 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 91
EcoRV GATATC 1 cut(s) 1267
FaeI CATG 8 cut(s) 62, 800, 845, 1340, 1369, 1377, 1612, 1620
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 1 cut(s) 1106
FatI CATG 8 cut(s) 58, 796, 841, 1336, 1365, 1373, 1608, 1616
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 1545
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 8 cut(s) 6, 9, 116, 192, 330, 1000, 1068, 1515
FokI GGATG 6 cut(s) 264, 383, 479, 1008, 1026, 1076
Fsp4HI GCNGC 8 cut(s) 6, 9, 116, 192, 330, 1000, 1068, 1515
FspBI CTAG 5 cut(s) 129, 248, 1194, 1259, 1281
GlaI GCGC 4 cut(s) 82, 119, 185, 1335
GluI GCNGC 8 cut(s) 6, 9, 116, 192, 330, 1000, 1068, 1515
GsaI CCCAGC 2 cut(s) 165, 427
GsuI CTGGAG 2 cut(s) 459, 603
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 4 cut(s) 93, 140, 329, 1189
HapII CCGG 2 cut(s) 173, 333
HhaI GCGC 4 cut(s) 83, 120, 186, 1336
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 8 cut(s) 62, 800, 845, 1340, 1369, 1377, 1612, 1620
Hin6I GCGC 4 cut(s) 81, 118, 184, 1334
HinP1I GCGC 4 cut(s) 81, 118, 184, 1334
HinfI GANTC 2 cut(s) 539, 959
HpaII CCGG 2 cut(s) 173, 333
HphI GGTGA 2 cut(s) 278, 1115
Hpy166II GTNNAC 5 cut(s) 233, 286, 397, 802, 1601
Hpy188I TCNGA 4 cut(s) 220, 762, 808, 1087
Hpy188III TCNNGA 6 cut(s) 107, 582, 1061, 1157, 1259, 1351
Hpy8I GTNNAC 5 cut(s) 233, 286, 397, 802, 1601
Hpy99I CGWCG 4 cut(s) 56, 80, 202, 299
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 306, 1247
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 7 cut(s) 191, 791, 878, 908, 1220, 1426, 1592
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 41, 807
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 8 cut(s) 62, 800, 845, 1340, 1369, 1377, 1612, 1620
HspAI GCGC 4 cut(s) 81, 118, 184, 1334
Ksp22I TGATCA 1 cut(s) 1545
Kzo9I GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 6 cut(s) 85, 440, 1018, 1159, 1228, 1412
Lsp1109I GCAGC 3 cut(s) 203, 1054, 1501
LweI GCATC 5 cut(s) 62, 865, 986, 1048, 1054
MaeI CTAG 5 cut(s) 129, 248, 1194, 1259, 1281
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 5 cut(s) 64, 446, 619, 892, 1103
MalI GATC 7 cut(s) 14, 57, 105, 149, 171, 1142, 1547
MbiI CCGCTC 1 cut(s) 88
MboI GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
MboII GAAGA 6 cut(s) 7, 424, 587, 1274, 1412, 1441
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 1056
MlsI TGGCCA 1 cut(s) 1189
MluNI TGGCCA 1 cut(s) 1189
MmeI TCCRAC 2 cut(s) 114, 693
Mox20I TGGCCA 1 cut(s) 1189
MscI TGGCCA 1 cut(s) 1189
MseI TTAA 8 cut(s) 669, 869, 935, 1014, 1077, 1113, 1401, 1628
MslI CAYNNNNRTG 2 cut(s) 1026, 1148
Msp20I TGGCCA 1 cut(s) 1189
MspA1I CMGCKG 1 cut(s) 1543
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 2 cut(s) 173, 333
MunI CAATTG 1 cut(s) 552
Mva1269I GAATGC 1 cut(s) 908
MvnI CGCG 2 cut(s) 83, 120
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
NlaIII CATG 8 cut(s) 62, 800, 845, 1340, 1369, 1377, 1612, 1620
NlaIV GGNNCC 5 cut(s) 92, 442, 1155, 1380, 1408
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 3 cut(s) 64, 446, 1103
NspI RCATGY 2 cut(s) 1340, 1620
PaeR7I CTCGAG 1 cut(s) 179
PceI AGGCCT 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 600
PctI GAATGC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 539, 959
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 8 cut(s) 7, 10, 117, 193, 331, 1001, 1069, 1516
PspFI CCCAGC 2 cut(s) 161, 423
PspN4I GGNNCC 5 cut(s) 92, 442, 1155, 1380, 1408
PspPI GGNCC 2 cut(s) 91, 175
PspXI VCTCGAGB 1 cut(s) 179
PsrI GAACNNNNNNTAC 2 cut(s) 1362, 1394
PstI CTGCAG 1 cut(s) 1594
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 1543
RsaI GTAC 2 cut(s) 1315, 1322
RsaNI GTAC 2 cut(s) 1314, 1321
RseI CAYNNNNRTG 2 cut(s) 1026, 1148
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 8 cut(s) 669, 869, 935, 1014, 1077, 1113, 1401, 1628
SatI GCNGC 8 cut(s) 6, 9, 116, 192, 330, 1000, 1068, 1515
Sau3AI GATC 7 cut(s) 12, 55, 103, 147, 169, 1140, 1545
Sau96I GGNCC 2 cut(s) 91, 175
SduI GDGCHC 1 cut(s) 1056
SfaNI GCATC 5 cut(s) 62, 865, 986, 1048, 1054
SfcI CTRYAG 1 cut(s) 1590
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 1026, 1148
SmlI CTYRAG 6 cut(s) 21, 179, 668, 1049, 1457, 1622
SmoI CTYRAG 6 cut(s) 21, 179, 668, 1049, 1457, 1622
SseBI AGGCCT 1 cut(s) 140
SspMI CTAG 5 cut(s) 129, 248, 1194, 1259, 1281
StuI AGGCCT 1 cut(s) 140
TaaI ACNGT 2 cut(s) 306, 1247
TaiI ACGT 1 cut(s) 297
TaqI TCGA 7 cut(s) 180, 197, 270, 297, 429, 471, 598
TatI WGTACW 1 cut(s) 1320
TauI GCSGC 5 cut(s) 8, 11, 118, 332, 1002
TfiI GAWTC 2 cut(s) 539, 959
Tru1I TTAA 8 cut(s) 669, 869, 935, 1014, 1077, 1113, 1401, 1628
Tru9I TTAA 8 cut(s) 669, 869, 935, 1014, 1077, 1113, 1401, 1628
TscAI CASTG 5 cut(s) 150, 349, 442, 451, 466
TseFI GTSAC 3 cut(s) 64, 446, 1103
TseI GCWGC 3 cut(s) 191, 1067, 1514
Tsp45I GTSAC 3 cut(s) 64, 446, 1103
TspDTI ATGAA 4 cut(s) 573, 900, 1403, 1435
TspGWI ACGGA 2 cut(s) 215, 1371
TspRI CASTG 5 cut(s) 150, 349, 442, 451, 466
Van91I CCANNNNNTGG 1 cut(s) 515
Vha464I CTTAAG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 3 cut(s) 812, 887, 901
XbaI TCTAGA 1 cut(s) 1258
XceI RCATGY 2 cut(s) 1340, 1620
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 232
XspI CTAG 5 cut(s) 129, 248, 1194, 1259, 1281
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.