The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPP2R1A-like_HEAT | PF22646 | 252 - 290 | 3.1e-07 | PPP2R1A-like HEAT repeat |
| VPS15-like_hel | PF22956 | 273 - 497 | 1.4e-08 | VPS15-like, helical domain |
| Beta-prop_WDR3_1st | PF25173 | 538 - 689 | 1.5e-17 | WDR3 first beta-propeller domain |
| Beta-prop_WDR5 | PF25175 | 612 - 679 | 5.3e-10 | WDR5 beta-propeller domain |
| WD40_Prp19 | PF24814 | 613 - 688 | 2.4e-10 | Prp19 WD40 domain |
| WD40 | PF00400 | 613 - 648 | 2.4e-06 | WD domain, G-beta repeat |
| Beta-prop_THOC3 | PF25174 | 614 - 687 | 5.3e-09 | THOC3 beta-propeller domain |
| B-prop_COPA_B_2nd | PF04053 | 712 - 956 | 2.8e-67 | COPA/B second beta-propeller |
| TPR_COPA_B | PF23953 | 985 - 1145 | 8.7e-20 | COPA/B TPR domain |
| COPI_C | PF06957 | 1188 - 1582 | 5.2e-165 | Coatomer (COPI) alpha subunit C-terminus |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 4650 |
| Acc16I | TGCGCA | 1 cut(s) | 2337 |
| Acc36I | ACCTGC | 2 cut(s) | 2027, 3173 |
| AccB1I | GGYRCC | 1 cut(s) | 856 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3839 |
| AccI | GTMKAC | 2 cut(s) | 101, 2779 |
| AccII | CGCG | 5 cut(s) | 1566, 1601, 1688, 1776, 1980 |
| AcoI | YGGCCR | 1 cut(s) | 3542 |
| AcsI | RAATTY | 5 cut(s) | 566, 1214, 1962, 2434, 3217 |
| AcuI | CTGAAG | 5 cut(s) | 822, 2226, 4200, 4334, 4570 |
| AcyI | GRCGYC | 1 cut(s) | 4647 |
| AfaI | GTAC | 3 cut(s) | 4344, 4623, 4705 |
| AflII | CTTAAG | 1 cut(s) | 4399 |
| AflIII | ACRYGT | 2 cut(s) | 299, 1842 |
| AgeI | ACCGGT | 1 cut(s) | 1366 |
| AhlI | ACTAGT | 1 cut(s) | 4105 |
| AjnI | CCWGG | 8 cut(s) | 134, 558, 975, 2191, 2424, 3697, 3721, 4523 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2212, 2244 |
| AleI | CACNNNNGTG | 1 cut(s) | 1701 |
| Alw21I | GWGCWC | 6 cut(s) | 54, 1500, 1761, 2682, 2690, 3771 |
| Alw26I | GTCTC | 6 cut(s) | 1011, 1622, 2304, 2693, 4481, 4654 |
| Alw44I | GTGCAC | 2 cut(s) | 2678, 2686 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3268 |
| Ama87I | CYCGRG | 1 cut(s) | 3479 |
| AoxI | GGCC | 8 cut(s) | 1219, 1230, 1673, 1765, 2085, 2886, 3542, 3904 |
| ApaLI | GTGCAC | 2 cut(s) | 2678, 2686 |
| ApoI | RAATTY | 5 cut(s) | 566, 1214, 1962, 2434, 3217 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 591, 623 |
| AsiGI | ACCGGT | 1 cut(s) | 1366 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 66, 147, 3020, 4290 |
| AspA2I | CCTAGG | 1 cut(s) | 3791 |
| AspLEI | GCGC | 4 cut(s) | 346, 1203, 2338, 3357 |
| AspS9I | GGNCC | 8 cut(s) | 132, 757, 1220, 1230, 1766, 2223, 3210, 3751 |
| AsuC2I | CCSGG | 1 cut(s) | 3776 |
| AsuII | TTCGAA | 1 cut(s) | 493 |
| AsuNHI | GCTAGC | 2 cut(s) | 2663, 3442 |
| AvaI | CYCGRG | 1 cut(s) | 3479 |
| AvaII | GGWCC | 5 cut(s) | 132, 757, 2223, 3210, 3751 |
| AvrII | CCTAGG | 1 cut(s) | 3791 |
| BaeGI | GKGCMC | 3 cut(s) | 469, 2682, 2690 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 1912, 1945, 2157, 2190, 4605, 4638 |
| BalI | TGGCCA | 1 cut(s) | 3544 |
| BamHI | GGATCC | 3 cut(s) | 1680, 2282, 3864 |
| BanI | GGYRCC | 1 cut(s) | 856 |
| BanII | GRGCYC | 3 cut(s) | 54, 1500, 3771 |
| BauI | CACGAG | 2 cut(s) | 111, 423 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 6 cut(s) | 54, 1500, 1761, 2682, 2690, 3771 |
| BbvCI | CCTCAGC | 1 cut(s) | 3291 |
| BccI | CCATC | 6 cut(s) | 1757, 2867, 3626, 3665, 3728, 3741 |
| BceAI | ACGGC | 3 cut(s) | 435, 1660, 4493 |
| BciT130I | CCWGG | 8 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 4525 |
| BciVI | GTATCC | 2 cut(s) | 1918, 1940 |
| BclI | TGATCA | 3 cut(s) | 640, 964, 1453 |
| BcnI | CCSGG | 1 cut(s) | 3776 |
| BcoDI | GTCTC | 6 cut(s) | 1011, 1622, 2304, 2693, 4481, 4654 |
| BcuI | ACTAGT | 1 cut(s) | 4105 |
| BfaI | CTAG | 7 cut(s) | 462, 2322, 2664, 3443, 3792, 4106, 4766 |
| BfmI | CTRYAG | 8 cut(s) | 402, 1446, 3117, 3900, 4013, 4458, 4535, 4663 |
| BfoI | RGCGCY | 1 cut(s) | 1204 |
| BfrI | CTTAAG | 1 cut(s) | 4399 |
| BfuAI | ACCTGC | 2 cut(s) | 2027, 3173 |
| BfuI | GTATCC | 2 cut(s) | 1918, 1940 |
| BglII | AGATCT | 2 cut(s) | 542, 1534 |
| BlnI | CCTAGG | 1 cut(s) | 3791 |
| BlpI | GCTNAGC | 3 cut(s) | 1890, 2639, 3888 |
| Bme1390I | CCNGG | 9 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 3776, 4525 |
| Bme18I | GGWCC | 5 cut(s) | 132, 757, 2223, 3210, 3751 |
| BmeT110I | CYCGRG | 1 cut(s) | 3479 |
| BmgT120I | GGNCC | 8 cut(s) | 132, 757, 1220, 1230, 1766, 2223, 3210, 3751 |
| BmiI | GGNNCC | 9 cut(s) | 702, 858, 1398, 1682, 2225, 2284, 3023, 3752, 3866 |
| BmrFI | CCNGG | 9 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 3776, 4525 |
| BmrI | ACTGGG | 2 cut(s) | 997, 3649 |
| BmtI | GCTAGC | 2 cut(s) | 2667, 3446 |
| BmuI | ACTGGG | 2 cut(s) | 997, 3649 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3862, 3894 |
| BpmI | CTGGAG | 3 cut(s) | 1836, 2537, 3744 |
| Bpu10I | CCTNAGC | 2 cut(s) | 158, 3291 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1890, 2639, 3888 |
| Bpu14I | TTCGAA | 1 cut(s) | 493 |
| BpuEI | CTTGAG | 3 cut(s) | 38, 690, 2423 |
| BpuMI | CCSGG | 1 cut(s) | 3776 |
| Bsa29I | ATCGAT | 1 cut(s) | 1747 |
| BsaAI | YACGTR | 1 cut(s) | 1175 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1533, 3863 |
| BsaHI | GRCGYC | 1 cut(s) | 4647 |
| BsaWI | WCCGGW | 2 cut(s) | 1366, 4033 |
| Bse118I | RCCGGY | 2 cut(s) | 1366, 2083 |
| Bse1I | ACTGG | 9 cut(s) | 860, 1003, 1035, 1963, 2683, 3146, 3644, 3844, 4340 |
| Bse3DI | GCAATG | 4 cut(s) | 105, 204, 3184, 4428 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1533, 3863 |
| BseBI | CCWGG | 8 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 4525 |
| BseCI | ATCGAT | 1 cut(s) | 1747 |
| BseJI | GATNNNNATC | 2 cut(s) | 1533, 3863 |
| BseMI | GCAATG | 4 cut(s) | 105, 204, 3184, 4428 |
| BseNI | ACTGG | 9 cut(s) | 860, 1003, 1035, 1963, 2683, 3146, 3644, 3844, 4340 |
| BseRI | GAGGAG | 2 cut(s) | 3365, 3662 |
| BseSI | GKGCMC | 3 cut(s) | 469, 2682, 2690 |
| BseYI | CCCAGC | 2 cut(s) | 813, 4166 |
| BsgI | GTGCAG | 2 cut(s) | 699, 1679 |
| Bsh1236I | CGCG | 5 cut(s) | 1566, 1601, 1688, 1776, 1980 |
| BshFI | GGCC | 8 cut(s) | 1221, 1232, 1675, 1767, 2087, 2888, 3544, 3906 |
| BshNI | GGYRCC | 1 cut(s) | 856 |
| BshTI | ACCGGT | 1 cut(s) | 1366 |
| BshVI | ATCGAT | 1 cut(s) | 1747 |
| BsiHKAI | GWGCWC | 6 cut(s) | 54, 1500, 1761, 2682, 2690, 3771 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3479 |
| BsiSI | CCGG | 5 cut(s) | 940, 1367, 2084, 3776, 4034 |
| BsmAI | GTCTC | 6 cut(s) | 1011, 1622, 2304, 2693, 4481, 4654 |
| BsmBI | CGTCTC | 2 cut(s) | 1622, 4654 |
| BsmI | GAATGC | 1 cut(s) | 4203 |
| BsnI | GGCC | 8 cut(s) | 1221, 1232, 1675, 1767, 2087, 2888, 3544, 3906 |
| BsoBI | CYCGRG | 1 cut(s) | 3479 |
| Bsp119I | TTCGAA | 1 cut(s) | 493 |
| Bsp1286I | GDGCHC | 7 cut(s) | 54, 469, 1500, 1761, 2682, 2690, 3771 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1890, 2639, 3888 |
| Bsp19I | CCATGG | 1 cut(s) | 531 |
| Bsp68I | TCGCGA | 1 cut(s) | 1688 |
| BspANI | GGCC | 8 cut(s) | 1221, 1232, 1675, 1767, 2087, 2888, 3544, 3906 |
| BspDI | ATCGAT | 1 cut(s) | 1747 |
| BspFNI | CGCG | 5 cut(s) | 1566, 1601, 1688, 1776, 1980 |
| BspHI | TCATGA | 2 cut(s) | 2041, 2695 |
| BspLI | GGNNCC | 9 cut(s) | 702, 858, 1398, 1682, 2225, 2284, 3023, 3752, 3866 |
| BspMAI | CTGCAG | 4 cut(s) | 406, 3904, 4462, 4539 |
| BspMI | ACCTGC | 2 cut(s) | 2027, 3173 |
| BspOI | GCTAGC | 2 cut(s) | 2667, 3446 |
| BspQI | GCTCTTC | 1 cut(s) | 3171 |
| BspT104I | TTCGAA | 1 cut(s) | 493 |
| BspT107I | GGYRCC | 1 cut(s) | 856 |
| BspTI | CTTAAG | 1 cut(s) | 4399 |
| BsrDI | GCAATG | 4 cut(s) | 105, 204, 3184, 4428 |
| BsrFI | RCCGGY | 2 cut(s) | 1366, 2083 |
| BsrI | ACTGG | 9 cut(s) | 860, 1003, 1035, 1963, 2683, 3146, 3644, 3844, 4340 |
| BssAI | RCCGGY | 2 cut(s) | 1366, 2083 |
| BssNI | GRCGYC | 1 cut(s) | 4647 |
| BssSI | CACGAG | 2 cut(s) | 111, 423 |
| BssT1I | CCWWGG | 4 cut(s) | 531, 1422, 2219, 3791 |
| Bst2BI | CACGAG | 2 cut(s) | 111, 423 |
| Bst2UI | CCWGG | 8 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 4525 |
| Bst6I | CTCTTC | 7 cut(s) | 918, 1628, 2697, 3171, 3609, 4125, 4310 |
| BstACI | GRCGYC | 1 cut(s) | 4647 |
| BstAFI | CTTAAG | 1 cut(s) | 4399 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 895, 4534 |
| BstBAI | YACGTR | 1 cut(s) | 1175 |
| BstBI | TTCGAA | 1 cut(s) | 493 |
| BstDSI | CCRYGG | 2 cut(s) | 531, 1676 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3205 |
| BstFNI | CGCG | 5 cut(s) | 1566, 1601, 1688, 1776, 1980 |
| BstH2I | RGCGCY | 1 cut(s) | 1204 |
| BstHHI | GCGC | 4 cut(s) | 346, 1203, 2338, 3357 |
| BstMAI | GTCTC | 6 cut(s) | 1011, 1622, 2304, 2693, 4481, 4654 |
| BstNI | CCWGG | 8 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 4525 |
| BstNSI | RCATGY | 9 cut(s) | 251, 303, 529, 821, 1144, 1310, 2651, 3847, 3896 |
| BstSCI | CCNGG | 9 cut(s) | 134, 558, 975, 2191, 2424, 3697, 3721, 3774, 4523 |
| BstSFI | CTRYAG | 8 cut(s) | 402, 1446, 3117, 3900, 4013, 4458, 4535, 4663 |
| BstSLI | GKGCMC | 3 cut(s) | 469, 2682, 2690 |
| BstUI | CGCG | 5 cut(s) | 1566, 1601, 1688, 1776, 1980 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 6 cut(s) | 542, 1507, 1534, 1680, 2282, 3864 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 983 |
| BstYI | RGATCY | 6 cut(s) | 542, 1507, 1534, 1680, 2282, 3864 |
| Bsu15I | ATCGAT | 1 cut(s) | 1747 |
| BsuI | GTATCC | 2 cut(s) | 1918, 1940 |
| BsuRI | GGCC | 8 cut(s) | 1221, 1232, 1675, 1767, 2087, 2888, 3544, 3906 |
| BsuTUI | ATCGAT | 1 cut(s) | 1747 |
| BtgI | CCRYGG | 2 cut(s) | 531, 1676 |
| BtgZI | GCGATG | 2 cut(s) | 3008, 3935 |
| BtsI | GCAGTG | 5 cut(s) | 324, 1151, 4375, 4455, 4728 |
| BtuMI | TCGCGA | 1 cut(s) | 1688 |
| BveI | ACCTGC | 2 cut(s) | 2027, 3173 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3268 |
| CciI | TCATGA | 2 cut(s) | 2041, 2695 |
| CfoI | GCGC | 4 cut(s) | 346, 1203, 2338, 3357 |
| Cfr10I | RCCGGY | 2 cut(s) | 1366, 2083 |
| Cfr13I | GGNCC | 8 cut(s) | 132, 757, 1220, 1230, 1766, 2223, 3210, 3751 |
| ClaI | ATCGAT | 1 cut(s) | 1747 |
| CseI | GACGC | 1 cut(s) | 1986 |
| CsiI | ACCWGGT | 2 cut(s) | 975, 2191 |
| Csp6I | GTAC | 3 cut(s) | 4343, 4622, 4704 |
| CspAI | ACCGGT | 1 cut(s) | 1366 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1239, 1274 |
| CviQI | GTAC | 3 cut(s) | 4343, 4622, 4704 |
| DraI | TTTAAA | 1 cut(s) | 2208 |
| EaeI | YGGCCR | 1 cut(s) | 3542 |
| Eam1104I | CTCTTC | 7 cut(s) | 918, 1628, 2697, 3171, 3609, 4125, 4310 |
| EarI | CTCTTC | 7 cut(s) | 918, 1628, 2697, 3171, 3609, 4125, 4310 |
| Ecl136II | GAGCTC | 3 cut(s) | 52, 1498, 3769 |
| Eco130I | CCWWGG | 4 cut(s) | 531, 1422, 2219, 3791 |
| Eco24I | GRGCYC | 3 cut(s) | 54, 1500, 3771 |
| Eco32I | GATATC | 2 cut(s) | 1586, 4041 |
| Eco47I | GGWCC | 5 cut(s) | 132, 757, 2223, 3210, 3751 |
| Eco53kI | GAGCTC | 3 cut(s) | 52, 1498, 3769 |
| Eco57I | CTGAAG | 5 cut(s) | 822, 2226, 4200, 4334, 4570 |
| Eco88I | CYCGRG | 1 cut(s) | 3479 |
| EcoICRI | GAGCTC | 3 cut(s) | 52, 1498, 3769 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3205 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2223, 3751 |
| EcoRI | GAATTC | 1 cut(s) | 1962 |
| EcoRII | CCWGG | 8 cut(s) | 134, 558, 975, 2191, 2424, 3697, 3721, 4523 |
| EcoRV | GATATC | 2 cut(s) | 1586, 4041 |
| EcoT14I | CCWWGG | 4 cut(s) | 531, 1422, 2219, 3791 |
| EcoT38I | GRGCYC | 3 cut(s) | 54, 1500, 3771 |
| ErhI | CCWWGG | 4 cut(s) | 531, 1422, 2219, 3791 |
| Esp3I | CGTCTC | 2 cut(s) | 1622, 4654 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3217, 3249, 4393, 4425 |
| FauNDI | CATATG | 1 cut(s) | 4618 |
| FbaI | TGATCA | 3 cut(s) | 640, 964, 1453 |
| FblI | GTMKAC | 2 cut(s) | 101, 2779 |
| FriOI | GRGCYC | 3 cut(s) | 54, 1500, 3771 |
| FspBI | CTAG | 7 cut(s) | 462, 2322, 2664, 3443, 3792, 4106, 4766 |
| FspI | TGCGCA | 1 cut(s) | 2337 |
| GlaI | GCGC | 4 cut(s) | 345, 1202, 2337, 3356 |
| GsaI | CCCAGC | 2 cut(s) | 817, 4170 |
| GsuI | CTGGAG | 3 cut(s) | 1836, 2537, 3744 |
| HaeII | RGCGCY | 1 cut(s) | 1204 |
| HaeIII | GGCC | 8 cut(s) | 1221, 1232, 1675, 1767, 2087, 2888, 3544, 3906 |
| HapII | CCGG | 5 cut(s) | 940, 1367, 2084, 3776, 4034 |
| HgaI | GACGC | 1 cut(s) | 1986 |
| HhaI | GCGC | 4 cut(s) | 346, 1203, 2338, 3357 |
| Hin1I | GRCGYC | 1 cut(s) | 4647 |
| Hin6I | GCGC | 4 cut(s) | 344, 1201, 2336, 3355 |
| HinP1I | GCGC | 4 cut(s) | 344, 1201, 2336, 3355 |
| HincII | GTYRAC | 4 cut(s) | 102, 801, 973, 1617 |
| HindII | GTYRAC | 4 cut(s) | 102, 801, 973, 1617 |
| HindIII | AAGCTT | 2 cut(s) | 959, 1124 |
| HpaII | CCGG | 5 cut(s) | 940, 1367, 2084, 3776, 4034 |
| Hpy99I | CGWCG | 2 cut(s) | 1980, 2190 |
| HpyCH4IV | ACGT | 5 cut(s) | 1174, 1515, 1844, 4345, 4647 |
| HpySE526I | ACGT | 5 cut(s) | 1174, 1515, 1844, 4345, 4647 |
| Hsp92I | GRCGYC | 1 cut(s) | 4647 |
| HspAI | GCGC | 4 cut(s) | 344, 1201, 2336, 3355 |
| Ksp22I | TGATCA | 3 cut(s) | 640, 964, 1453 |
| LguI | GCTCTTC | 1 cut(s) | 3171 |
| MabI | ACCWGGT | 2 cut(s) | 975, 2191 |
| MaeI | CTAG | 7 cut(s) | 462, 2322, 2664, 3443, 3792, 4106, 4766 |
| MaeII | ACGT | 5 cut(s) | 1174, 1515, 1844, 4345, 4647 |
| MfeI | CAATTG | 6 cut(s) | 30, 509, 1020, 3123, 3974, 4388 |
| MflI | RGATCY | 6 cut(s) | 542, 1507, 1534, 1680, 2282, 3864 |
| MhlI | GDGCHC | 7 cut(s) | 54, 469, 1500, 1761, 2682, 2690, 3771 |
| MlsI | TGGCCA | 1 cut(s) | 3544 |
| MluNI | TGGCCA | 1 cut(s) | 3544 |
| MlyI | GAGTC | 6 cut(s) | 332, 1699, 1729, 2455, 3502, 4516 |
| MmeI | TCCRAC | 9 cut(s) | 252, 678, 735, 1935, 1999, 3494, 3564, 3857, 4107 |
| Mox20I | TGGCCA | 1 cut(s) | 3544 |
| MroXI | GAANNNNTTC | 4 cut(s) | 66, 147, 3020, 4290 |
| MscI | TGGCCA | 1 cut(s) | 3544 |
| MslI | CAYNNNNRTG | 3 cut(s) | 530, 1701, 2046 |
| Msp20I | TGGCCA | 1 cut(s) | 3544 |
| MspA1I | CMGCKG | 6 cut(s) | 1184, 1701, 2369, 3449, 3887, 3899 |
| MspCI | CTTAAG | 1 cut(s) | 4399 |
| MspI | CCGG | 5 cut(s) | 940, 1367, 2084, 3776, 4034 |
| MspR9I | CCNGG | 9 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 3776, 4525 |
| MunI | CAATTG | 6 cut(s) | 30, 509, 1020, 3123, 3974, 4388 |
| Mva1269I | GAATGC | 1 cut(s) | 4203 |
| MvaI | CCWGG | 8 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 4525 |
| MvnI | CGCG | 5 cut(s) | 1566, 1601, 1688, 1776, 1980 |
| NciI | CCSGG | 1 cut(s) | 3776 |
| NcoI | CCATGG | 1 cut(s) | 531 |
| NdeI | CATATG | 1 cut(s) | 4618 |
| NheI | GCTAGC | 2 cut(s) | 2663, 3442 |
| NlaIV | GGNNCC | 9 cut(s) | 702, 858, 1398, 1682, 2225, 2284, 3023, 3752, 3866 |
| NmuCI | GTSAC | 7 cut(s) | 1434, 1853, 1945, 2327, 3380, 3635, 4600 |
| NruI | TCGCGA | 1 cut(s) | 1688 |
| NsbI | TGCGCA | 1 cut(s) | 2337 |
| NspI | RCATGY | 9 cut(s) | 251, 303, 529, 821, 1144, 1310, 2651, 3847, 3896 |
| NspV | TTCGAA | 1 cut(s) | 493 |
| OliI | CACNNNNGTG | 1 cut(s) | 1701 |
| PaeI | GCATGC | 4 cut(s) | 251, 1144, 3847, 3896 |
| PagI | TCATGA | 2 cut(s) | 2041, 2695 |
| PciI | ACATGT | 1 cut(s) | 299 |
| PciSI | GCTCTTC | 1 cut(s) | 3171 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1758 |
| PctI | GAATGC | 1 cut(s) | 4203 |
| PdmI | GAANNNNTTC | 4 cut(s) | 66, 147, 3020, 4290 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3839 |
| PinAI | ACCGGT | 1 cut(s) | 1366 |
| PleI | GAGTC | 6 cut(s) | 331, 1698, 1729, 2455, 3502, 4515 |
| PpsI | GAGTC | 6 cut(s) | 331, 1698, 1729, 2455, 3502, 4515 |
| Ppu21I | YACGTR | 1 cut(s) | 1175 |
| PpuMI | RGGWCCY | 2 cut(s) | 2223, 3751 |
| PscI | ACATGT | 1 cut(s) | 299 |
| Psp124BI | GAGCTC | 3 cut(s) | 54, 1500, 3771 |
| Psp5II | RGGWCCY | 2 cut(s) | 2223, 3751 |
| Psp6I | CCWGG | 8 cut(s) | 134, 558, 975, 2191, 2424, 3697, 3721, 4523 |
| PspFI | CCCAGC | 2 cut(s) | 813, 4166 |
| PspGI | CCWGG | 8 cut(s) | 134, 558, 975, 2191, 2424, 3697, 3721, 4523 |
| PspN4I | GGNNCC | 9 cut(s) | 702, 858, 1398, 1682, 2225, 2284, 3023, 3752, 3866 |
| PspPI | GGNCC | 8 cut(s) | 132, 757, 1220, 1230, 1766, 2223, 3210, 3751 |
| PspPPI | RGGWCCY | 2 cut(s) | 2223, 3751 |
| PstI | CTGCAG | 4 cut(s) | 406, 3904, 4462, 4539 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3268 |
| PsuI | RGATCY | 6 cut(s) | 542, 1507, 1534, 1680, 2282, 3864 |
| PvuII | CAGCTG | 3 cut(s) | 1184, 2369, 3449 |
| RruI | TCGCGA | 1 cut(s) | 1688 |
| RsaI | GTAC | 3 cut(s) | 4344, 4623, 4705 |
| RsaNI | GTAC | 3 cut(s) | 4343, 4622, 4704 |
| RseI | CAYNNNNRTG | 3 cut(s) | 530, 1701, 2046 |
| SacI | GAGCTC | 3 cut(s) | 54, 1500, 3771 |
| SalI | GTCGAC | 1 cut(s) | 100 |
| SapI | GCTCTTC | 1 cut(s) | 3171 |
| Sau96I | GGNCC | 8 cut(s) | 132, 757, 1220, 1230, 1766, 2223, 3210, 3751 |
| SchI | GAGTC | 6 cut(s) | 332, 1699, 1729, 2455, 3502, 4516 |
| ScrFI | CCNGG | 9 cut(s) | 136, 560, 977, 2193, 2426, 3699, 3723, 3776, 4525 |
| SduI | GDGCHC | 7 cut(s) | 54, 469, 1500, 1761, 2682, 2690, 3771 |
| SexAI | ACCWGGT | 2 cut(s) | 975, 2191 |
| SfcI | CTRYAG | 8 cut(s) | 402, 1446, 3117, 3900, 4013, 4458, 4535, 4663 |
| SfuI | TTCGAA | 1 cut(s) | 493 |
| SinI | GGWCC | 5 cut(s) | 132, 757, 2223, 3210, 3751 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 530, 1701, 2046 |
| SmlI | CTYRAG | 4 cut(s) | 53, 705, 2402, 4399 |
| SmoI | CTYRAG | 4 cut(s) | 53, 705, 2402, 4399 |
| SpeI | ACTAGT | 1 cut(s) | 4105 |
| SphI | GCATGC | 4 cut(s) | 251, 1144, 3847, 3896 |
| SspI | AATATT | 4 cut(s) | 256, 2490, 2774, 3094 |
| SspMI | CTAG | 7 cut(s) | 462, 2322, 2664, 3443, 3792, 4106, 4766 |
| SstI | GAGCTC | 3 cut(s) | 54, 1500, 3771 |
| StyD4I | CCNGG | 9 cut(s) | 134, 558, 975, 2191, 2424, 3697, 3721, 3774, 4523 |
| StyI | CCWWGG | 4 cut(s) | 531, 1422, 2219, 3791 |
| TaiI | ACGT | 5 cut(s) | 1177, 1518, 1847, 4348, 4650 |
| TatI | WGTACW | 1 cut(s) | 4703 |
| TauI | GCSGC | 3 cut(s) | 3887, 3899, 4544 |
| TseFI | GTSAC | 7 cut(s) | 1434, 1853, 1945, 2327, 3380, 3635, 4600 |
| Tsp45I | GTSAC | 7 cut(s) | 1434, 1853, 1945, 2327, 3380, 3635, 4600 |
| TspGWI | ACGGA | 3 cut(s) | 1922, 2398, 2696 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3839 |
| Vha464I | CTTAAG | 1 cut(s) | 4399 |
| VneI | GTGCAC | 2 cut(s) | 2678, 2686 |
| VpaK11BI | GGWCC | 5 cut(s) | 132, 757, 2223, 3210, 3751 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3205 |
| XapI | RAATTY | 5 cut(s) | 566, 1214, 1962, 2434, 3217 |
| XceI | RCATGY | 9 cut(s) | 251, 303, 529, 821, 1144, 1310, 2651, 3847, 3896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4480 |
| XmaJI | CCTAGG | 1 cut(s) | 3791 |
| XmiI | GTMKAC | 2 cut(s) | 101, 2779 |
| XmnI | GAANNNNTTC | 4 cut(s) | 66, 147, 3020, 4290 |
| XspI | CTAG | 7 cut(s) | 462, 2322, 2664, 3443, 3792, 4106, 4766 |
| ZraI | GACGTC | 1 cut(s) | 4648 |