Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

11853077 .. 11859022

Gene Structure 5946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3654 bp

ATGCTGACGAAATTCGAGACCAAGAGTAACCGTGTCAAGGGGCTGAGCTTCCACAGCAAGAGGCCATGGATCTTGGCGAGTCTTCACAGCGGTGTGATCCAGCTCTGGGATTACCGCATGGGCACTCTCATCGACCGCTTTGACGAGCACGATGGCCCCGTCCGCGGCGTCCATTTCCACACCTCTCAGCCTCTTTTCGTCTCCGGCGGGGATGATTACAAGATCAAGGTGTGGAATTATAAGTTGCATAGGTGCCTGTTTACTCTTCTTGGACACCTTGATTACATCCGTACTGTTCAATTCCATCATGAGTACCCTTGGATTGTGAGTGCCAGTGATGACCAGACTATCAGAATATGGAATTGGCAGTCCCGGACTTGTATTTCTGTTCTCACTGGACACAATCATTACGTCATGTGTGCCTTGTTCCATCCCAAGGAGGATCTTGTTGTCTCAGCATCATTGGATCAAACTGTTCGTGTTTGGGATATTGGTGCACTTAGGAAGAAAACAGTTGCGCCTGCAGATGACATCCTACGACTGAGTCAAATGAATGCAGATTTCTTTGGTGGAGTTGATGCTGTGGTTAAGTATGTCTTGGAAGGCCATGATCGGGGTGTTAATTGGGCCTCCTTCCATCCTACACTCCCTCTGATTGTGTCTGGAGCTGATGATCGACAAGTGAAACTTTGGCGAATGAATGATACAAAGGCTTGGGAGGTGGACACTTTAAGGGGGCACATGAACAATGTATCATGTGTTTTATTCCATGCGAGGCAGGATATTATTGTTTCCAATTCAGAGGATAGGAGTATCCGAGTCTGGGATGCCACAAAAAGAACTGGTCTTCAGACATTTCGCAGAGAGCATGATAGGTTCTGGATTCTATCAGCACACCCTGAAATGAACCTTTTGGCTGCTGGTCATGATAGTGGCATGATTGTCTTTAAATTGGAGAGAGAACGCCCTGCCTTTTCTGTCAGTGCTGATTCTATGTACTATGTCAAAGATCGTTTTCTCCGCTTTTATGAGTTCTCAAACCAGAGAGACACTCAGGTTATCCCTATACGAAGGCCCGGTTCTTCCACCTTGAATCAAGGGGCTAAAACTCTATCTTATAGCCCTACAGAAAATGCTGTTTTGATCTGTTCAGATACGGAAGGCGGTTCCTATGAACTATACATAATTCCCAAAGAAAGCTATGGTCGGGGTGATACTGTGCAGGAGGCAAAAAGAGGAGCTGGAGGGCCAGCGGTTTTTGTGGCTCGAAATAGATTTGCTGTGCTTGAAAAAAGCACAAACCAAGTCTTAGTTAAAAATCTGAAAAATGAGATTATCAAGAAGAGCGCCCTTCCTTTTGTTGCTGATGCAATATATTATGCTGGAACTGGAAACTTGCTCTGCAGGGCAGAGGATAGAGTTGTCATTTTTGACCTGCAGCAGAGAATTATTCTTGGGGAGCTTCAAACTCCGTTTGTAAGGTACATAGTTTGGTCAAATGACATGGAGAACATTGCTTTACTCAGCAAACATTCCATTGTGATAGCCAATAAGAAGCTCGTTCATCAATGCACCCTACATGAGACCATTCGTGTAAAGAGTGGAGCTTGGGATGACCATGGTGTCTTCATATATACAACTCTGAACCATATCAAATACTGTCTTCCTAATGGGGACAGTGGAATCATTAGGACCCTTGATGTTCCCGTTTATATAACAAAGGTGTATGGAAGCACCATACATTGCTTGGATCGAGATGGGAAGAACTGTGCAATTGTTGTTGATGCAACAGAATATGTTTTTAAGTTGTCCTTACTGAAGAAGAGGTACGACCAGGTTATGAGCATGATTAGGAGCTCTGAGCTCTGTGGCCAGGCCATGATTGCATATCTACAGCAGAAAGGTTTCCCTGAGGTTGCCCTTCATTTTGTGAAGGATGAGAGGACTCGCTTCAACTTGGCACTAGGGAGTGGAAACATACAGATTGCTGTTGCTTCTGCTAAGGAAATTGATGAGAAAGATCACTGGTATCGGTTGGGAGTTGAGGCTCTTCGTCAAGGTAATTCAGGTATTGTAGAATATGCATATCAGAGGACAAAGAATTTTGAGAGGCTATCATTCCTATATCTTGTTACTGGAAACTTGGATAAGTTATCCAAAATGCTGAAAATCGCTGAAGTGAAGAATGATGTGATGGGCCAGTTCCACAATGCTCTATATTTGGGTGACATCGGGGAGCGTGTTAAGATATTGGAGAATGCTGGGCATTTACCCCTTGCATATGCTACAGCTAAAGCTCATGGCCTCCAAGATATTGCTGAACGGTTGGCAGGTGAGCTGGGAGATAATGTTCCTATTTTACCTGAAGGAAAGTTACCATCTCTTCTGGTACCTCCTAGCCCAATTATCTGTGGTGGAGATTGGCCCTTGTTGAGGGTCATGAGAGGAATATTTGAGGGTGGTCTTGATAATGTGGGCAGAAATGCTGAGGAAGAATATGAGGAGGCTGCAGATGCTGATTGGGGAGAGGATTTGGATATTGTTGATGTGGAAAACATTCAGAATGGAGACATTACTGCAGTGCTGGAAGATGAGGACACACATGAGGAAAATGAAGAGGGAGGGTGGGATCTTGAAGATCTTGAACTTCCACCAGAGATTGATACTCCCAAAACTGCCAACAATGCCCGTGCTTCCGTGTTTGTTGCCCCAACTCCAGGTATGCCTGTAAGTCAAATTTGGAGCCAAAAATCTTCTCTTGCTGCTGAACATGCAGCAGCTGGGAATTTTGATATTGCAATGCGATTATTGAGCCGGCAGCTGGGAATAAAGAACTTTGCACCCTTAAAACAATTGTTTCTTGACTTGCACACGGGGAGTCATTCGTATTTACGCGCCTTATCGACAGCTCCTGTGATCTCCTTGGCTATTGAGAGGGGATGGAGTGAATCAGTGAGCCCTAATGTTAGGAGCCCTCCTGCTTTGGTTTTTAAATTCTCAGACCTGGAAGAGAAGCTTAAGGCGGGCTACAAGGCCACAACTACAGGGAAATTTACTGAGGCTTTACGACTTCTACTCGGTATTCTGCACACTATTCCTCTGGTCGTAGTTGATACAAGGAGAGAGGTTGATGAAGTAAAGGAATTAATTATCATTGTAAGGGAATATGTTCTGGGTTTGAAGATGGAGCTTAAGAGGAGGGAGGTTAAAGATAATCCAGTTCGTCAACAGGAGCTAGCAGCTTACTTCACCCACTGTAACCTCCAGATGCCTCACTTGAGACTAGCATTACTGAACGCCATGACTGTGTGCTACAAGGCTGGTAATCTCAACACAGCTGGTAACTTTGCCAGGCGACTATTGGAGACCAATCCCACAAATGAAAACCAAGCAAAGACTGCAAGGCAAGTCCTGCAGGCTGCTGAGAAGAACATGAATGATGCAACCCAGCTCAATTATGATTTCAGAAATCCATTTGTGGTTTGTGGGGCAACATATGTGCCTATTTACCGAGGACAGAAGGATGTGTCATGCCCATACTGTAGTTCTCGGTTTGTTCCTGCTCAGGAAGGCCAGCTCTGTACTGTTTGCGATCTTGCAGTTGTTGGATCTGATGCATCTGGGTTACTCTGCTCTCCGTCCCAGATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

1217

Amino Acids

136.87

Weight (kDa)

6.51

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	2 - 79	1.1e-08	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	3 - 90	5.6e-10	WDR5 beta-propeller domain
WDR55	PF24796	3 - 166	4.4e-12	WDR55
Beta-prop_WDR3_1st	PF25173	4 - 164	1.6e-31	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	4 - 162	3.4e-15	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	6 - 104	1.6e-10	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	17 - 83	9.5e-06	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	26 - 122	3.2e-07	G protein beta WD-40 repeat protein
WD40	PF00400	42 - 79	7.1e-06	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	49 - 167	8.2e-08	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	49 - 165	6.6e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	49 - 166	6.4e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5	PF25175	49 - 166	1.8e-30	WDR5 beta-propeller domain
WD40_Prp19	PF24814	60 - 167	6.7e-20	Prp19 WD40 domain
WD40	PF00400	84 - 121	3e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	88 - 163	1.6e-08	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	91 - 162	1.9e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	96 - 166	3.5e-12	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	108 - 167	2.2e-12	THOC3 beta-propeller domain
WD40	PF00400	126 - 163	6.4e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	191 - 306	3.3e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	195 - 314	2e-17	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	196 - 317	4.1e-18	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	196 - 308	1.9e-20	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	197 - 292	5.9e-07	TEP-1 second beta-propeller
WD40	PF00400	198 - 231	3e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	202 - 314	6.6e-09	WDR3 second beta-propeller domain
WDR55	PF24796	207 - 315	9.8e-09	WDR55
Beta-prop_THOC3	PF25174	208 - 316	3.3e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	211 - 287	7e-09	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	212 - 319	2.5e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	223 - 321	8.9e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	241 - 276	1.7e-06	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	340 - 584	2.5e-64	COPA/B second beta-propeller
TPR_COPA_B	PF23953	626 - 771	2.2e-18	COPA/B TPR domain
COPI_C	PF06957	815 - 1217	2.5e-172	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AarI	CACCTGC	1 cut(s)	2321
AasI	GACNNNNNNGTC	1 cut(s)	1622
Acc36I	ACCTGC	2 cut(s)	1443, 2321
Acc65I	GGTACC	1 cut(s)	2389
AccB1I	GGYRCC	2 cut(s)	252, 2389
AccII	CGCG	2 cut(s)	165, 2895
AclWI	GGATC	7 cut(s)	77, 91, 450, 474, 1758, 2637, 3616
AcoI	YGGCCR	1 cut(s)	1870
AcsI	RAATTY	6 cut(s)	11, 2101, 2736, 2785, 2993, 3050
AcuI	CTGAAG	4 cut(s)	833, 1838, 2196, 2385
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	7 cut(s)	292, 314, 998, 1484, 1829, 2391, 3583
AfiI	CCNNNNNNNGG	9 cut(s)	37, 106, 164, 436, 613, 823, 2433, 2717, 2821
AflII	CTTAAG	2 cut(s)	3017, 3191
AgsI	TTSAA	8 cut(s)	299, 1093, 1289, 1466, 1954, 2636, 2645, 3181
AjnI	CCWGG	5 cut(s)	1833, 1872, 2716, 3003, 3350
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AleI	CACNNNNGTG	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	2334, 2366
Alw21I	GWGCWC	4 cut(s)	150, 499, 1859, 1866
Alw26I	GTCTC	8 cut(s)	11, 205, 457, 1041, 1577, 2562, 3274, 3359
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	7 cut(s)	77, 91, 450, 474, 1758, 2637, 3616
AlwNI	CAGNNNCTG	3 cut(s)	2516, 2780, 2912
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	9 cut(s)	917, 1438, 2507, 2762, 2774, 2777, 2818, 3239, 3419
ApoI	RAATTY	6 cut(s)	11, 2101, 2736, 2785, 2993, 3050
AseI	ATTAAT	1 cut(s)	3146
Asp700I	GAANNNNTTC	3 cut(s)	1904, 2556, 3168
Asp718I	GGTACC	1 cut(s)	2389
AspLEI	GCGC	3 cut(s)	520, 1349, 2897
AspS9I	GGNCC	7 cut(s)	155, 627, 1074, 1247, 1692, 2197, 2424
AsuC2I	CCSGG	2 cut(s)	373, 1077
AsuHPI	GGTGA	4 cut(s)	1223, 2237, 2345, 3241
AsuNHI	GCTAGC	1 cut(s)	3235
AvaII	GGWCC	1 cut(s)	1692
AxyI	CCTNAGG	1 cut(s)	1911
BaeGI	GKGCMC	3 cut(s)	125, 499, 741
BalI	TGGCCA	1 cut(s)	1872
BanI	GGYRCC	2 cut(s)	252, 2389
BanII	GRGCYC	4 cut(s)	1859, 1866, 2960, 2975
BarI	GAAGNNNNNNTAC	4 cut(s)	1811, 1843, 2358, 2390
BbsI	GAAGAC	4 cut(s)	74, 839, 1618, 1655
Bbv12I	GWGCWC	4 cut(s)	150, 499, 1859, 1866
BbvCI	CCTCAGC	1 cut(s)	2487
BbvI	GCAGC	9 cut(s)	904, 1450, 2494, 2749, 2786, 2789, 2830, 3251, 3406
BccI	CCATC	9 cut(s)	146, 312, 438, 645, 1751, 2188, 2386, 2934, 3178
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	5 cut(s)	1835, 1874, 2718, 3005, 3352
BciVI	GTATCC	1 cut(s)	824
BcnI	CCSGG	2 cut(s)	373, 1077
BcoDI	GTCTC	8 cut(s)	11, 205, 457, 1041, 1577, 2562, 3274, 3359
BfaI	CTAG	4 cut(s)	1964, 2397, 3236, 3284
BfoI	RGCGCY	1 cut(s)	1350
BfrI	CTTAAG	2 cut(s)	3017, 3191
BfuAI	ACCTGC	2 cut(s)	1443, 2321
BfuI	GTATCC	1 cut(s)	824
BglII	AGATCT	1 cut(s)	2638
BlpI	GCTNAGC	1 cut(s)	44
Bme1390I	CCNGG	7 cut(s)	373, 1077, 1835, 1874, 2718, 3005, 3352
Bme18I	GGWCC	1 cut(s)	1692
BmgT120I	GGNCC	7 cut(s)	155, 627, 1074, 1247, 1692, 2197, 2424
BmiI	GGNNCC	7 cut(s)	157, 254, 1168, 1694, 2391, 2744, 2972
BmrFI	CCNGG	7 cut(s)	373, 1077, 1835, 1874, 2718, 3005, 3352
BmtI	GCTAGC	1 cut(s)	3239
BpiI	GAAGAC	4 cut(s)	74, 839, 1618, 1655
BplI	GAGNNNNNCTC	2 cut(s)	1036, 1068
BpmI	CTGGAG	4 cut(s)	684, 1263, 2700, 3248
Bpu10I	CCTNAGC	3 cut(s)	2001, 2487, 3564
Bpu1102I	GCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	3298
BpuMI	CCSGG	2 cut(s)	373, 1077
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	3 cut(s)	11, 1577, 3359
BsaJI	CCNNGG	7 cut(s)	65, 163, 317, 435, 1618, 2922, 3511
BsaXI	ACNNNNNCTCC	2 cut(s)	2334, 2364
Bsc4I	CCNNNNNNNGG	9 cut(s)	37, 106, 164, 436, 613, 823, 2433, 2717, 2821
Bse118I	RCCGGY	1 cut(s)	2814
Bse1I	ACTGG	8 cut(s)	333, 400, 847, 1393, 2030, 2140, 2200, 3218
Bse21I	CCTNAGG	1 cut(s)	1911
Bse3DI	GCAATG	3 cut(s)	1512, 1741, 2805
BseBI	CCWGG	5 cut(s)	1835, 1874, 2718, 3005, 3352
BseDI	CCNNGG	7 cut(s)	65, 163, 317, 435, 1618, 2922, 3511
BseLI	CCNNNNNNNGG	9 cut(s)	37, 106, 164, 436, 613, 823, 2433, 2717, 2821
BseMI	GCAATG	3 cut(s)	1512, 1741, 2805
BseNI	ACTGG	8 cut(s)	333, 400, 847, 1393, 2030, 2140, 2200, 3218
BseRI	GAGGAG	3 cut(s)	1251, 2516, 3211
BseSI	GKGCMC	3 cut(s)	125, 499, 741
BseXI	GCAGC	9 cut(s)	904, 1450, 2494, 2749, 2786, 2789, 2830, 3251, 3406
BseYI	CCCAGC	5 cut(s)	2261, 2338, 2780, 2821, 3447
BsgI	GTGCAG	2 cut(s)	1241, 3071
Bsh1236I	CGCG	2 cut(s)	165, 2895
Bsh1285I	CGRYCG	1 cut(s)	136
BshNI	GGYRCC	2 cut(s)	252, 2389
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	4 cut(s)	150, 499, 1859, 1866
BsiSI	CCGG	4 cut(s)	204, 373, 1077, 2815
BslFI	GGGAC	3 cut(s)	355, 1688, 3625
BslI	CCNNNNNNNGG	9 cut(s)	37, 106, 164, 436, 613, 823, 2433, 2717, 2821
BsmAI	GTCTC	8 cut(s)	11, 205, 457, 1041, 1577, 2562, 3274, 3359
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	3 cut(s)	355, 1688, 3625
BsmI	GAATGC	2 cut(s)	559, 2263
Bso31I	GGTCTC	3 cut(s)	11, 1577, 3359
Bsp1286I	GDGCHC	8 cut(s)	125, 150, 499, 741, 1859, 1866, 2960, 2975
Bsp1720I	GCTNAGC	1 cut(s)	44
Bsp19I	CCATGG	2 cut(s)	65, 1618
BspFNI	CGCG	2 cut(s)	165, 2895
BspHI	TCATGA	3 cut(s)	307, 925, 2439
BspLI	GGNNCC	7 cut(s)	157, 254, 1168, 1694, 2391, 2744, 2972
BspMAI	CTGCAG	6 cut(s)	526, 1406, 1440, 2512, 2581, 3417
BspMI	ACCTGC	2 cut(s)	1443, 2321
BspOI	GCTAGC	1 cut(s)	3239
BspPI	GGATC	7 cut(s)	77, 91, 450, 474, 1758, 2637, 3616
BspQI	GCTCTTC	2 cut(s)	1337, 2055
BspT107I	GGYRCC	2 cut(s)	252, 2389
BspTI	CTTAAG	2 cut(s)	3017, 3191
BspTNI	GGTCTC	3 cut(s)	11, 1577, 3359
BsrDI	GCAATG	3 cut(s)	1512, 1741, 2805
BsrFI	RCCGGY	1 cut(s)	2814
BsrI	ACTGG	8 cut(s)	333, 400, 847, 1393, 2030, 2140, 2200, 3218
BssAI	RCCGGY	1 cut(s)	2814
BssECI	CCNNGG	7 cut(s)	65, 163, 317, 435, 1618, 2922, 3511
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2922
Bst2UI	CCWGG	5 cut(s)	1835, 1874, 2718, 3005, 3352
Bst6I	CTCTTC	7 cut(s)	270, 1337, 1817, 2055, 2388, 2610, 3003
BstACI	GRCGYC	1 cut(s)	168
BstAFI	CTTAAG	2 cut(s)	3017, 3191
BstAPI	GCANNNNNTGC	2 cut(s)	3398, 3412
BstC8I	GCNNGC	7 cut(s)	522, 1251, 2816, 3025, 3237, 3417, 3575
BstDSI	CCRYGG	3 cut(s)	65, 163, 1618
BstENI	CCTNNNNNAGG	1 cut(s)	2431
BstFNI	CGCG	2 cut(s)	165, 2895
BstH2I	RGCGCY	1 cut(s)	1350
BstHHI	GCGC	3 cut(s)	520, 1349, 2897
BstMAI	GTCTC	8 cut(s)	11, 205, 457, 1041, 1577, 2562, 3274, 3359
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	8 cut(s)	54, 162, 1883, 2513, 2684, 2771, 3398, 3412
BstNI	CCWGG	5 cut(s)	1835, 1874, 2718, 3005, 3352
BstNSI	RCATGY	1 cut(s)	2774
BstSCI	CCNGG	7 cut(s)	371, 1075, 1833, 1872, 2716, 3003, 3350
BstSLI	GKGCMC	3 cut(s)	125, 499, 741
BstUI	CGCG	2 cut(s)	165, 2895
BstV1I	GCAGC	9 cut(s)	904, 1450, 2494, 2749, 2786, 2789, 2830, 3251, 3406
BstV2I	GAAGAC	4 cut(s)	74, 839, 1618, 1655
BstX2I	RGATCY	5 cut(s)	69, 442, 2629, 2638, 3608
BstYI	RGATCY	5 cut(s)	69, 442, 2629, 2638, 3608
Bsu36I	CCTNAGG	1 cut(s)	1911
BsuI	GTATCC	1 cut(s)	824
BtgI	CCRYGG	3 cut(s)	65, 163, 1618
BtsI	GCAGTG	1 cut(s)	2586
BtsIMutI	CAGTG	8 cut(s)	340, 393, 988, 1684, 2023, 2586, 2958, 3253
BveI	ACCTGC	2 cut(s)	1443, 2321
Cac8I	GCNNGC	7 cut(s)	522, 1251, 2816, 3025, 3237, 3417, 3575
CaiI	CAGNNNCTG	3 cut(s)	2516, 2780, 2912
CciI	TCATGA	3 cut(s)	307, 925, 2439
CfoI	GCGC	3 cut(s)	520, 1349, 2897
Cfr10I	RCCGGY	1 cut(s)	2814
Cfr13I	GGNCC	7 cut(s)	155, 627, 1074, 1247, 1692, 2197, 2424
Cfr42I	CCGCGG	1 cut(s)	166
CseI	GACGC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	1833
Csp6I	GTAC	7 cut(s)	291, 313, 997, 1483, 1828, 2390, 3582
CviQI	GTAC	7 cut(s)	291, 313, 997, 1483, 1828, 2390, 3582
DraI	TTTAAA	2 cut(s)	949, 2992
DrdI	GACNNNNNNGTC	1 cut(s)	1622
DseDI	GACNNNNNNGTC	1 cut(s)	1622
EaeI	YGGCCR	1 cut(s)	1870
Eam1104I	CTCTTC	7 cut(s)	270, 1337, 1817, 2055, 2388, 2610, 3003
EarI	CTCTTC	7 cut(s)	270, 1337, 1817, 2055, 2388, 2610, 3003
Ecl136II	GAGCTC	2 cut(s)	1857, 1864
Eco130I	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2922
Eco24I	GRGCYC	4 cut(s)	1859, 1866, 2960, 2975
Eco31I	GGTCTC	3 cut(s)	11, 1577, 3359
Eco47I	GGWCC	1 cut(s)	1692
Eco53kI	GAGCTC	2 cut(s)	1857, 1864
Eco57I	CTGAAG	4 cut(s)	833, 1838, 2196, 2385
Eco81I	CCTNAGG	1 cut(s)	1911
EcoICRI	GAGCTC	2 cut(s)	1857, 1864
EcoNI	CCTNNNNNAGG	1 cut(s)	2431
EcoO109I	RGGNCCY	1 cut(s)	1692
EcoRII	CCWGG	5 cut(s)	1833, 1872, 2716, 3003, 3350
EcoT14I	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2922
EcoT22I	ATGCAT	2 cut(s)	2086, 3619
EcoT38I	GRGCYC	4 cut(s)	1859, 1866, 2960, 2975
ErhI	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2922
Esp3I	CGTCTC	1 cut(s)	205
FalI	AAGNNNNNCTT	8 cut(s)	581, 613, 672, 704, 1796, 1828, 3000, 3032
FaqI	GGGAC	3 cut(s)	355, 1688, 3625
FauI	CCCGC	2 cut(s)	200, 3016
FauNDI	CATATG	2 cut(s)	2281, 3496
FriOI	GRGCYC	4 cut(s)	1859, 1866, 2960, 2975
FspBI	CTAG	4 cut(s)	1964, 2397, 3236, 3284
GlaI	GCGC	3 cut(s)	519, 1348, 2896
GsaI	CCCAGC	5 cut(s)	2265, 2342, 2784, 2825, 3451
GsuI	CTGGAG	4 cut(s)	684, 1263, 2700, 3248
HaeII	RGCGCY	1 cut(s)	1350
HapII	CCGG	4 cut(s)	204, 373, 1077, 2815
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	3 cut(s)	520, 1349, 2897
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	3 cut(s)	518, 1347, 2895
HinP1I	GCGC	3 cut(s)	518, 1347, 2895
HincII	GTYRAC	1 cut(s)	3227
HindII	GTYRAC	1 cut(s)	3227
HindIII	AAGCTT	1 cut(s)	3014
HpaII	CCGG	4 cut(s)	204, 373, 1077, 2815
HphI	GGTGA	4 cut(s)	1223, 2237, 2345, 3241
Hpy166II	GTNNAC	4 cut(s)	261, 497, 724, 3227
Hpy8I	GTNNAC	4 cut(s)	261, 497, 724, 3227
HpyCH4IV	ACGT	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	8 cut(s)	54, 162, 1883, 2513, 2684, 2771, 3398, 3412
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	3 cut(s)	518, 1347, 2895
KpnI	GGTACC	1 cut(s)	2393
KroI	GCCGGC	1 cut(s)	2814
KroNI	GCCGGC	1 cut(s)	2816
KspI	CCGCGG	1 cut(s)	166
LguI	GCTCTTC	2 cut(s)	1337, 2055
Lsp1109I	GCAGC	9 cut(s)	904, 1450, 2494, 2749, 2786, 2789, 2830, 3251, 3406
MabI	ACCWGGT	1 cut(s)	1833
MaeI	CTAG	4 cut(s)	1964, 2397, 3236, 3284
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	7 cut(s)	26, 2131, 2225, 2373, 3257, 3341, 3624
MfeI	CAATTG	2 cut(s)	1773, 2852
MflI	RGATCY	5 cut(s)	69, 442, 2629, 2638, 3608
MhlI	GDGCHC	8 cut(s)	125, 150, 499, 741, 1859, 1866, 2960, 2975
MlsI	TGGCCA	1 cut(s)	1872
MluNI	TGGCCA	1 cut(s)	1872
MlyI	GAGTC	5 cut(s)	88, 553, 828, 1939, 2887
MmeI	TCCRAC	1 cut(s)	3586
Mox20I	TGGCCA	1 cut(s)	1872
Mph1103I	ATGCAT	2 cut(s)	2086, 3619
MroNI	GCCGGC	1 cut(s)	2814
MroXI	GAANNNNTTC	3 cut(s)	1904, 2556, 3168
MscI	TGGCCA	1 cut(s)	1872
MslI	CAYNNNNRTG	3 cut(s)	90, 930, 3305
Msp20I	TGGCCA	1 cut(s)	1872
MspA1I	CMGCKG	6 cut(s)	90, 165, 1253, 2780, 2821, 3338
MspCI	CTTAAG	2 cut(s)	3017, 3191
MspI	CCGG	4 cut(s)	204, 373, 1077, 2815
MspR9I	CCNGG	7 cut(s)	373, 1077, 1835, 1874, 2718, 3005, 3352
MunI	CAATTG	2 cut(s)	1773, 2852
Mva1269I	GAATGC	2 cut(s)	559, 2263
MvaI	CCWGG	5 cut(s)	1835, 1874, 2718, 3005, 3352
MvnI	CGCG	2 cut(s)	165, 2895
MwoI	GCNNNNNNNGC	8 cut(s)	54, 162, 1883, 2513, 2684, 2771, 3398, 3412
NaeI	GCCGGC	1 cut(s)	2816
NciI	CCSGG	2 cut(s)	373, 1077
NcoI	CCATGG	2 cut(s)	65, 1618
NdeI	CATATG	2 cut(s)	2281, 3496
NgoMIV	GCCGGC	1 cut(s)	2814
NheI	GCTAGC	1 cut(s)	3235
NlaIV	GGNNCC	7 cut(s)	157, 254, 1168, 1694, 2391, 2744, 2972
NmuCI	GTSAC	1 cut(s)	2225
NsiI	ATGCAT	2 cut(s)	2086, 3619
NspI	RCATGY	1 cut(s)	2774
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	3 cut(s)	307, 925, 2439
PaqCI	CACCTGC	1 cut(s)	2321
PciSI	GCTCTTC	2 cut(s)	1337, 2055
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	2 cut(s)	559, 2263
PdiI	GCCGGC	1 cut(s)	2816
PdmI	GAANNNNTTC	3 cut(s)	1904, 2556, 3168
PfeI	GAWTC	5 cut(s)	883, 989, 1093, 1683, 2948
PflFI	GACNNNGTC	1 cut(s)	543
PfoI	TCCNGGA	1 cut(s)	371
PleI	GAGTC	5 cut(s)	87, 552, 827, 1939, 2886
PpsI	GAGTC	5 cut(s)	87, 552, 827, 1939, 2886
PpuMI	RGGWCCY	1 cut(s)	1692
PshBI	ATTAAT	1 cut(s)	3146
PsiI	TTATAA	1 cut(s)	240
Psp124BI	GAGCTC	2 cut(s)	1859, 1866
Psp5II	RGGWCCY	1 cut(s)	1692
Psp6I	CCWGG	5 cut(s)	1833, 1872, 2716, 3003, 3350
PspFI	CCCAGC	5 cut(s)	2261, 2338, 2780, 2821, 3447
PspGI	CCWGG	5 cut(s)	1833, 1872, 2716, 3003, 3350
PspN4I	GGNNCC	7 cut(s)	157, 254, 1168, 1694, 2391, 2744, 2972
PspPI	GGNCC	7 cut(s)	155, 627, 1074, 1247, 1692, 2197, 2424
PspPPI	RGGWCCY	1 cut(s)	1692
PstI	CTGCAG	6 cut(s)	526, 1406, 1440, 2512, 2581, 3417
PstNI	CAGNNNCTG	3 cut(s)	2516, 2780, 2912
PsuI	RGATCY	5 cut(s)	69, 442, 2629, 2638, 3608
PsyI	GACNNNGTC	1 cut(s)	543
PvuII	CAGCTG	3 cut(s)	2780, 2821, 3338
RsaI	GTAC	7 cut(s)	292, 314, 998, 1484, 1829, 2391, 3583
RsaNI	GTAC	7 cut(s)	291, 313, 997, 1483, 1828, 2390, 3582
RseI	CAYNNNNRTG	3 cut(s)	90, 930, 3305
SacI	GAGCTC	2 cut(s)	1859, 1866
SacII	CCGCGG	1 cut(s)	166
SapI	GCTCTTC	2 cut(s)	1337, 2055
Sau96I	GGNCC	7 cut(s)	155, 627, 1074, 1247, 1692, 2197, 2424
SbfI	CCTGCAGG	1 cut(s)	3417
SchI	GAGTC	5 cut(s)	88, 553, 828, 1939, 2887
ScrFI	CCNGG	7 cut(s)	373, 1077, 1835, 1874, 2718, 3005, 3352
SdaI	CCTGCAGG	1 cut(s)	3417
SduI	GDGCHC	8 cut(s)	125, 150, 499, 741, 1859, 1866, 2960, 2975
SexAI	ACCWGGT	1 cut(s)	1833
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	1692
SmiMI	CAYNNNNRTG	3 cut(s)	90, 930, 3305
SmlI	CTYRAG	3 cut(s)	3017, 3191, 3277
SmoI	CTYRAG	3 cut(s)	3017, 3191, 3277
Sse8387I	CCTGCAGG	1 cut(s)	3417
SspI	AATATT	1 cut(s)	2451
SspMI	CTAG	4 cut(s)	1964, 2397, 3236, 3284
SstI	GAGCTC	2 cut(s)	1859, 1866
StyD4I	CCNGG	7 cut(s)	371, 1075, 1833, 1872, 2716, 3003, 3350
StyI	CCWWGG	5 cut(s)	65, 317, 435, 1618, 2922
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	6 cut(s)	15, 132, 676, 1267, 1753, 2903
TatI	WGTACW	2 cut(s)	996, 3581
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	5 cut(s)	883, 989, 1093, 1683, 2948
TscAI	CASTG	8 cut(s)	340, 400, 988, 1684, 2030, 2586, 2958, 3260
TseFI	GTSAC	1 cut(s)	2225
TseI	GCWGC	9 cut(s)	917, 1438, 2507, 2762, 2774, 2777, 2818, 3239, 3419
Tsp45I	GTSAC	1 cut(s)	2225
TspGWI	ACGGA	5 cut(s)	278, 1172, 1461, 2686, 3627
TspRI	CASTG	8 cut(s)	340, 400, 988, 1684, 2030, 2586, 2958, 3260
Tth111I	GACNNNGTC	1 cut(s)	543
Vha464I	CTTAAG	2 cut(s)	3017, 3191
VneI	GTGCAC	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	1692
VspI	ATTAAT	1 cut(s)	3146
XagI	CCTNNNNNAGG	1 cut(s)	2431
XapI	RAATTY	6 cut(s)	11, 2101, 2736, 2785, 2993, 3050
XceI	RCATGY	1 cut(s)	2774
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1744, 3358
XmnI	GAANNNNTTC	3 cut(s)	1904, 2556, 3168
XspI	CTAG	4 cut(s)	1964, 2397, 3236, 3284
Zsp2I	ATGCAT	2 cut(s)	2086, 3619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.