Rh4BG061900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000764
Physical Location & Seq
Forward (+)
11086459 .. 11088447
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG061900.1

Sequence Viewer

Length: 426 bp
ATGACTTCCTCCAGCAAAGCGGCTACAACTGGATTATTAACGACCCAAAATTCTTCAAAAGGCTCGACCGCAATGGCGATAATGGATTGGATTTTGGGGAAGCTCTCACATTCTACTACATCATTAAAACGAGGTACATCTTATGCCAAGGGTACCAGTGCGGCGTACACCTTTGCGGTACCAGAGGCCGAACAACGACCCGAGCTCGAGAGTCTTGAACAAGTTGCTCTTAGGCTCGGCGGTCTTGTCGGAGCTCTCGGCAGTAGCAGCGACCTCAAAACTGGTCCGACCGACGACAGGAGAAGTCTAGGGCCTGAGCTTGAAATCGGAGGAGGAGAGGGACCAGGATCGGCGGGAAAGAGCGGCGGAGAGGAGGAGGTTTGGGCGGAGAGGCGGAGGTTTGGGCGGAGAGGCGGTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.61

Weight (kDa)

6.61

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 152, 178
AccB1I GGYRCC 2 cut(s) 152, 178
AccBSI CCGCTC 1 cut(s) 363
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 4 cut(s) 136, 154, 167, 180
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 3 cut(s) 57, 218, 323
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 4 cut(s) 103, 205, 254, 319
AluI AGCT 4 cut(s) 103, 205, 254, 319
Alw21I GWGCWC 2 cut(s) 207, 256
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 1 cut(s) 355
Ama87I CYCGRG 2 cut(s) 200, 206
AoxI GGCC 2 cut(s) 186, 311
ApeKI GCWGC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 2 cut(s) 152, 178
AspS9I GGNCC 3 cut(s) 284, 311, 341
AvaI CYCGRG 2 cut(s) 200, 206
AvaII GGWCC 2 cut(s) 284, 341
BanI GGYRCC 2 cut(s) 152, 178
BanII GRGCYC 2 cut(s) 207, 256
Bbv12I GWGCWC 2 cut(s) 207, 256
BbvI GCAGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 308
BisI GCNGC 4 cut(s) 21, 162, 268, 364
BlsI GCNGC 4 cut(s) 22, 163, 269, 365
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 2 cut(s) 284, 341
BmeT110I CYCGRG 2 cut(s) 200, 206
BmgT120I GGNCC 3 cut(s) 284, 311, 341
BmiI GGNNCC 3 cut(s) 154, 180, 342
BmrFI CCNGG 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 1 cut(s) 400
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 3 cut(s) 34, 156, 286
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 3 cut(s) 34, 156, 286
BseRI GAGGAG 4 cut(s) 345, 348, 386, 389
BseXI GCAGC 1 cut(s) 279
Bsh1285I CGRYCG 2 cut(s) 69, 291
BshFI GGCC 2 cut(s) 188, 313
BshNI GGYRCC 2 cut(s) 152, 178
BsiEI CGRYCG 2 cut(s) 69, 291
BsiHKAI GWGCWC 2 cut(s) 207, 256
BsiHKCI CYCGRG 2 cut(s) 200, 206
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 188, 313
BsoBI CYCGRG 2 cut(s) 200, 206
Bsp1286I GDGCHC 2 cut(s) 207, 256
Bsp143I GATC 1 cut(s) 347
BspANI GGCC 2 cut(s) 188, 313
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 154, 180, 342
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 2 cut(s) 152, 178
BsrBI CCGCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 3 cut(s) 34, 156, 286
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 230, 315
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 1 cut(s) 347
BstMCI CGRYCG 2 cut(s) 69, 291
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 188, 313
BtsIMutI CAGTG 1 cut(s) 163
Cfr13I GGNCC 3 cut(s) 284, 311, 341
Csp6I GTAC 4 cut(s) 135, 153, 166, 179
CviJI RGCY 9 cut(s) 23, 63, 103, 188, 205, 235, 254, 313, 319
CviKI_1 RGCY 9 cut(s) 23, 63, 103, 188, 205, 235, 254, 313, 319
CviQI GTAC 4 cut(s) 135, 153, 166, 179
DdeI CTNAG 2 cut(s) 230, 315
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
EciI GGCGGA 4 cut(s) 381, 401, 409, 421
Ecl136II GAGCTC 2 cut(s) 205, 254
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 2 cut(s) 207, 256
Eco47I GGWCC 2 cut(s) 284, 341
Eco53kI GAGCTC 2 cut(s) 205, 254
Eco88I CYCGRG 2 cut(s) 200, 206
EcoICRI GAGCTC 2 cut(s) 205, 254
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 2 cut(s) 207, 256
ErhI CCWWGG 1 cut(s) 147
FaiI YATR 1 cut(s) 144
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 354
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 4 cut(s) 21, 162, 268, 364
FriOI GRGCYC 2 cut(s) 207, 256
Fsp4HI GCNGC 4 cut(s) 21, 162, 268, 364
FspBI CTAG 1 cut(s) 308
GluI GCNGC 4 cut(s) 21, 162, 268, 364
HaeIII GGCC 2 cut(s) 188, 313
HinfI GANTC 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 251, 288, 329
Hpy188III TCNNGA 2 cut(s) 208, 215
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 2 cut(s) 230, 315
KpnI GGTACC 2 cut(s) 156, 182
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 9 cut(s) 15, 25, 169, 195, 267, 283, 327, 330, 357
Lsp1109I GCAGC 1 cut(s) 279
MaeI CTAG 1 cut(s) 308
MalI GATC 1 cut(s) 349
MbiI CCGCTC 1 cut(s) 363
MboI GATC 1 cut(s) 347
MboII GAAGA 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 207, 256
MluCI AATT 1 cut(s) 49
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 229, 311
MseI TTAA 2 cut(s) 38, 125
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 1 cut(s) 347
NlaIV GGNNCC 3 cut(s) 154, 180, 342
NmeAIII GCCGAG 2 cut(s) 216, 237
PaeR7I CTCGAG 1 cut(s) 206
PkrI GCNGC 4 cut(s) 22, 163, 269, 365
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp124BI GAGCTC 2 cut(s) 207, 256
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 3 cut(s) 154, 180, 342
PspPI GGNCC 3 cut(s) 284, 311, 341
RsaI GTAC 4 cut(s) 136, 154, 167, 180
RsaNI GTAC 4 cut(s) 135, 153, 166, 179
SacI GAGCTC 2 cut(s) 207, 256
SaqAI TTAA 2 cut(s) 38, 125
SatI GCNGC 4 cut(s) 21, 162, 268, 364
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 3 cut(s) 284, 311, 341
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 2 cut(s) 207, 256
SetI ASST 9 cut(s) 105, 136, 173, 207, 256, 276, 321, 381, 401
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 2 cut(s) 284, 341
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 2 cut(s) 207, 256
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 2 cut(s) 65, 207
TaqII GACCGA 1 cut(s) 305
TasI AATT 1 cut(s) 49
TauI GCSGC 3 cut(s) 23, 164, 366
Tru1I TTAA 2 cut(s) 38, 125
Tru9I TTAA 2 cut(s) 38, 125
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 267
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 284, 341
XapI RAATTY 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.