Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34185523 .. 34185885

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1248700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTGAAAATTGCTGAAGTCAAGAATGATGTGATGGGCCAGTTCCACAATGCTTTGTATTTGGGTGACATCAGAGAGCGTGTTAAGATCTTGGAGAATGCAGGTCATTTACCTCTTGCTTATAGCACAACTGTAATTCATGGGCTCCATGATATTGCCGAACGTTTGGCGGCTGAACTGGGAGATAATGTTCCTGTTTTACCCAAGGTGAAATCTCCTTCTCTTTTGTTACCACCAACGCCAATCATCTGCGGAGGAGATTGGCCCTTGTTGAGGGTCATGCGAGGAATATTTGAGGGTGGTCTTGATAATGTGGGCAAGAATGTTGAGGAAGATTACGAAGAGGCTGCAGATGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

121

Amino Acids

13.11

Weight (kDa)

4.87

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	2 cut(s)	170, 252
AclI	AACGTT	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	7
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	37, 263
ApeKI	GCWGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	37, 264
AsuHPI	GGTGA	2 cut(s)	77, 220
BanII	GRGCYC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	2 cut(s)	171, 348
BlsI	GCNGC	2 cut(s)	172, 349
BmgT120I	GGNCC	2 cut(s)	37, 264
BmiI	GGNNCC	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	40, 183
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	40, 183
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	334
BshFI	GGCC	2 cut(s)	39, 265
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	39, 265
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	170, 252
BspANI	GGCC	2 cut(s)	39, 265
BspLI	GGNNCC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	40, 183
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	39, 265
BveI	ACCTGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	37, 264
CviAII	CATG	3 cut(s)	140, 149, 280
CviJI	RGCY	5 cut(s)	39, 145, 173, 265, 347
CviKI_1	RGCY	5 cut(s)	39, 145, 173, 265, 347
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	143, 152, 283
FaiI	YATR	4 cut(s)	123, 141, 150, 281
FatI	CATG	3 cut(s)	139, 148, 279
Fnu4HI	GCNGC	2 cut(s)	171, 348
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	171, 348
GluI	GCNGC	2 cut(s)	171, 348
HaeIII	GGCC	2 cut(s)	39, 265
Hin1II	CATG	3 cut(s)	143, 152, 283
HphI	GGTGA	2 cut(s)	77, 220
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	2 cut(s)	22, 305
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	101, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	3 cut(s)	143, 152, 283
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	4 cut(s)	53, 87, 164, 207
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	343
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	2 cut(s)	65, 228
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	344, 353
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	2 cut(s)	9, 135
MnlI	CCTC	7 cut(s)	123, 248, 267, 278, 289, 322, 337
MseI	TTAA	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	3 cut(s)	143, 152, 283
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	65
PctI	GAATGC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	172, 349
Psp1406I	AACGTT	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	2 cut(s)	37, 264
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	171, 348
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	2 cut(s)	37, 264
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	4 cut(s)	106, 115, 166, 210
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	9, 135
SsiI	CCGC	2 cut(s)	170, 252
SspI	AATATT	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	166
TasI	AATT	2 cut(s)	9, 135
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	128
XagI	CCTNNNNNAGG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.