Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34281228 .. 34282502

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1250200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTCGATTCAAAGGCAGAGGACAGAGTCATTATTTTTGACCTGCAGCAGAGAACTATTGTTGGGGAGCTTCAAACTCCTTTCGTAAGTGTAAAGAGTGGAGCTTGGGATGACAATGGCGTCTTCATATATACAACCTTGAACCACATCAAATACTGCCTTCCTAATGGGGATAGTGGAATCATCAGGACCCTCGACGTTCCCGTATATATAACAAAAGTGTATGGAAACACCATACATTGCTTGGATCGAGATGGGAAGAACTGTGCCATTGTTGTTGATGCAACAGAATATGTTTTCAAGTTATCCTTACTGAAGAAGAGGTATGACCAGGTTATGAGCATGATAAGGAGTTCTGAGCTCTGTGGCCAGGCCATGATTGCATATCTACAGCAGAAAGGTTTCCCTGAGGTTGCCCTTCATTTTGTGAAGGATGAGAGGACTCGCTTCAACTTGGCACTAGGGAGCGGGAACATCCAGATTGCTGTTGCTTCTGCCAAGGAAATTGATGAGAAAGATCACTGGTATCGATTGGGAGTGGAGGCCCTTCGTCAGGGTAATGCAAATTCATGGGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

194

Amino Acids

21.75

Weight (kDa)

6.42

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B-prop_COPA_B_2nd	PF04053	29 - 83	3.6e-19	COPA/B second beta-propeller
TPR_COPA_B	PF23953	125 - 187	5e-09	COPA/B TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	468
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	12, 74, 142, 301, 451
AjnI	CCWGG	2 cut(s)	330, 369
AluBI	AGCT	3 cut(s)	70, 104, 361
AluI	AGCT	3 cut(s)	70, 104, 361
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	3 cut(s)	367, 372, 543
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	189, 544
AvaII	GGWCC	1 cut(s)	189
AxyI	CCTNAGG	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	369
BanII	GRGCYC	2 cut(s)	363, 577
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	332, 371
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	2 cut(s)	44, 389
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	332, 371
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	189, 544
BmiI	GGNNCC	2 cut(s)	191, 576
BmrFI	CCNGG	2 cut(s)	332, 371
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	1 cut(s)	527
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	332, 371
BseCI	ATCGAT	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	3 cut(s)	115, 439, 474
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	348, 399
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	3 cut(s)	369, 374, 545
BshVI	ATCGAT	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	553
BsnI	GGCC	3 cut(s)	369, 374, 545
Bsp1286I	GDGCHC	2 cut(s)	363, 577
Bsp143I	GATC	2 cut(s)	247, 517
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	3 cut(s)	369, 374, 545
BspCNI	CTCAG	2 cut(s)	349, 400
BspDI	ATCGAT	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	191, 576
BspMAI	CTGCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	2 cut(s)	247, 517
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	332, 371
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	357, 408
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	115, 439, 474
BstKTI	GATC	2 cut(s)	250, 520
BstMBI	GATC	2 cut(s)	247, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	2 cut(s)	332, 371
BstSCI	CCNGG	2 cut(s)	330, 369
BstSFI	CTRYAG	2 cut(s)	44, 389
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	529
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	369, 374, 545
BsuTUI	ATCGAT	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	115, 439, 474
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	189, 544
ClaI	ATCGAT	1 cut(s)	529
CseI	GACGC	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	330
CviAII	CATG	4 cut(s)	343, 376, 570, 579
CviJI	RGCY	7 cut(s)	70, 104, 361, 369, 374, 545, 575
CviKI_1	RGCY	7 cut(s)	70, 104, 361, 369, 374, 545, 575
DdeI	CTNAG	2 cut(s)	357, 408
DpnI	GATC	2 cut(s)	249, 519
DpnII	GATC	2 cut(s)	247, 517
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	2 cut(s)	363, 577
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoO109I	RGGNCCY	2 cut(s)	189, 544
EcoRII	CCWGG	2 cut(s)	330, 369
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	363, 577
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	346, 379, 573, 582
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	4 cut(s)	342, 375, 569, 578
FauI	CCCGC	1 cut(s)	461
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	3 cut(s)	122, 446, 461
FriOI	GRGCYC	2 cut(s)	363, 577
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	369, 374, 545
HgaI	GACGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	346, 379, 573, 582
HinfI	GANTC	4 cut(s)	8, 27, 180, 442
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	3 cut(s)	187, 251, 478
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	4 cut(s)	170, 424, 428, 557
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	46, 284, 383, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	357, 408
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	346, 379, 573, 582
Kzo9I	GATC	2 cut(s)	247, 517
LmnI	GCTCC	4 cut(s)	67, 101, 465, 580
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	271
MabI	ACCWGGT	1 cut(s)	330
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	249, 519
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	2 cut(s)	247, 517
MboII	GAAGA	4 cut(s)	115, 271, 328, 331
MhlI	GDGCHC	2 cut(s)	363, 577
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	2 cut(s)	504, 565
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	36, 436
MnlI	CCTC	6 cut(s)	13, 203, 315, 403, 432, 535
Mox20I	TGGCCA	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	332, 371
MvaI	CCWGG	2 cut(s)	332, 371
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	2 cut(s)	247, 517
NlaIII	CATG	4 cut(s)	346, 379, 573, 582
NlaIV	GGNNCC	2 cut(s)	191, 576
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	8, 180
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	2 cut(s)	35, 436
PpsI	GAGTC	2 cut(s)	35, 436
PpuMI	RGGWCCY	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	330, 369
PspGI	CCWGG	2 cut(s)	330, 369
PspN4I	GGNNCC	2 cut(s)	191, 576
PspPI	GGNCC	2 cut(s)	189, 544
PspPPI	RGGWCCY	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	363
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	247, 517
Sau96I	GGNCC	2 cut(s)	189, 544
SchI	GAGTC	2 cut(s)	36, 436
ScrFI	CCNGG	2 cut(s)	332, 371
SduI	GDGCHC	2 cut(s)	363, 577
SexAI	ACCWGGT	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	2 cut(s)	44, 389
SinI	GGWCC	1 cut(s)	189
Sse9I	AATT	2 cut(s)	504, 565
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	330, 369
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	4 cut(s)	6, 195, 250, 529
TasI	AATT	2 cut(s)	504, 565
TfiI	GAWTC	2 cut(s)	8, 180
TscAI	CASTG	1 cut(s)	527
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	115, 410, 558
TspRI	CASTG	1 cut(s)	527
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.