The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_WDR5 | PF25175 | 8 - 75 | 2.4e-10 | WDR5 beta-propeller domain |
| WD40_WDHD1_1st | PF24817 | 8 - 55 | 1e-05 | WDHD1 first WD40 domain |
| Beta-prop_THOC3 | PF25174 | 9 - 84 | 2.3e-09 | THOC3 beta-propeller domain |
| WD40_Prp19 | PF24814 | 9 - 84 | 1.1e-10 | Prp19 WD40 domain |
| WD40 | PF00400 | 9 - 44 | 1.6e-06 | WD domain, G-beta repeat |
| Beta-prop_WDR3_1st | PF25173 | 10 - 85 | 1.4e-11 | WDR3 first beta-propeller domain |
| B-prop_COPA_B_2nd | PF04053 | 108 - 352 | 6.6e-69 | COPA/B second beta-propeller |
| TPR_COPA_B | PF23953 | 393 - 539 | 5.2e-19 | COPA/B TPR domain |
| COPI_C | PF06957 | 583 - 986 | 1.8e-166 | Coatomer (COPI) alpha subunit C-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2459 |
| AatII | GACGTC | 1 cut(s) | 2835 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2024 |
| AccI | GTMKAC | 2 cut(s) | 118, 523 |
| AccII | CGCG | 1 cut(s) | 2244 |
| AclWI | GGATC | 5 cut(s) | 478, 1062, 2044, 2057, 2516 |
| AcoI | YGGCCR | 1 cut(s) | 1567 |
| AcsI | RAATTY | 3 cut(s) | 335, 765, 1405 |
| AcuI | CTGAAG | 3 cut(s) | 1236, 1581, 1983 |
| AcyI | GRCGYC | 2 cut(s) | 376, 2832 |
| AfaI | GTAC | 4 cut(s) | 329, 422, 2808, 2890 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 39, 2024, 2352 |
| AflII | CTTAAG | 1 cut(s) | 2372 |
| AflIII | ACRYGT | 1 cut(s) | 121 |
| AjnI | CCWGG | 2 cut(s) | 379, 2657 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 400, 432 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1638, 1670 |
| Alw21I | GWGCWC | 4 cut(s) | 870, 878, 1956, 2608 |
| Alw26I | GTCTC | 4 cut(s) | 345, 881, 972, 2839 |
| Alw44I | GTGCAC | 3 cut(s) | 866, 874, 2604 |
| AlwI | GGATC | 5 cut(s) | 478, 1062, 2044, 2057, 2516 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2087 |
| AoxI | GGCC | 4 cut(s) | 1074, 1567, 1606, 1727 |
| ApaLI | GTGCAC | 3 cut(s) | 866, 874, 2604 |
| ApoI | RAATTY | 3 cut(s) | 335, 765, 1405 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 594, 626 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 578, 1208, 1653 |
| AspLEI | GCGC | 1 cut(s) | 2244 |
| AspS9I | GGNCC | 4 cut(s) | 798, 1074, 1936, 2279 |
| AsuHPI | GGTGA | 7 cut(s) | 191, 527, 773, 1733, 1832, 1841, 1919 |
| AvaII | GGWCC | 3 cut(s) | 798, 1936, 2279 |
| BaeGI | GKGCMC | 6 cut(s) | 45, 870, 878, 1683, 2608, 2843 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2790, 2823 |
| BalI | TGGCCA | 1 cut(s) | 1569 |
| BamHI | GGATCC | 1 cut(s) | 2049 |
| BanII | GRGCYC | 1 cut(s) | 1956 |
| BauI | CACGAG | 1 cut(s) | 2836 |
| BbsI | GAAGAC | 2 cut(s) | 723, 1403 |
| Bbv12I | GWGCWC | 4 cut(s) | 870, 878, 1956, 2608 |
| BbvCI | CCTCAGC | 2 cut(s) | 1479, 2498 |
| BccI | CCATC | 4 cut(s) | 458, 1055, 1811, 1926 |
| BceAI | ACGGC | 3 cut(s) | 569, 1621, 2603 |
| BciT130I | CCWGG | 2 cut(s) | 381, 2659 |
| BciVI | GTATCC | 1 cut(s) | 22 |
| BcoDI | GTCTC | 4 cut(s) | 345, 881, 972, 2839 |
| BfaI | CTAG | 6 cut(s) | 257, 309, 1001, 1526, 1995, 2424 |
| BfmI | CTRYAG | 7 cut(s) | 429, 740, 1305, 1635, 1881, 2720, 2727 |
| BfrI | CTTAAG | 1 cut(s) | 2372 |
| BfuI | GTATCC | 1 cut(s) | 22 |
| BglII | AGATCT | 2 cut(s) | 1551, 2376 |
| BlpI | GCTNAGC | 1 cut(s) | 827 |
| Bme1390I | CCNGG | 2 cut(s) | 381, 2659 |
| Bme18I | GGWCC | 3 cut(s) | 798, 1936, 2279 |
| BmgT120I | GGNCC | 4 cut(s) | 798, 1074, 1936, 2279 |
| BmiI | GGNNCC | 4 cut(s) | 385, 1211, 1937, 2051 |
| BmrFI | CCNGG | 2 cut(s) | 381, 2659 |
| BmrI | ACTGGG | 1 cut(s) | 2302 |
| BmsI | GCATC | 7 cut(s) | 520, 661, 1078, 1307, 1455, 1864, 2911 |
| BmuI | ACTGGG | 1 cut(s) | 2302 |
| BpiI | GAAGAC | 2 cut(s) | 723, 1403 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2047, 2079 |
| BpmI | CTGGAG | 2 cut(s) | 1289, 2202 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1479, 2498 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 827 |
| BpuEI | CTTGAG | 2 cut(s) | 55, 2856 |
| BsaAI | YACGTR | 2 cut(s) | 122, 2201 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2048 |
| BsaHI | GRCGYC | 2 cut(s) | 376, 2832 |
| BsaJI | CCNNGG | 5 cut(s) | 379, 407, 1360, 1976, 2818 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1638, 1668 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 39, 2024, 2352 |
| Bse1I | ACTGG | 8 cut(s) | 151, 871, 1334, 1444, 2029, 2185, 2219, 2308 |
| Bse3DI | GCAATG | 5 cut(s) | 846, 1188, 1372, 2112, 2634 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2048 |
| BseBI | CCWGG | 2 cut(s) | 381, 2659 |
| BseDI | CCNNGG | 5 cut(s) | 379, 407, 1360, 1976, 2818 |
| BseGI | GGATG | 8 cut(s) | 136, 469, 922, 1066, 1298, 1801, 1810, 1937 |
| BseJI | GATNNNNATC | 1 cut(s) | 2048 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 39, 2024, 2352 |
| BseMI | GCAATG | 5 cut(s) | 846, 1188, 1372, 2112, 2634 |
| BseMII | CTCAG | 5 cut(s) | 468, 841, 1470, 2375, 2489 |
| BseNI | ACTGG | 8 cut(s) | 151, 871, 1334, 1444, 2029, 2185, 2219, 2308 |
| BseRI | GAGGAG | 2 cut(s) | 1847, 2515 |
| BseSI | GKGCMC | 6 cut(s) | 45, 870, 878, 1683, 2608, 2843 |
| BseYI | CCCAGC | 1 cut(s) | 912 |
| Bsh1236I | CGCG | 1 cut(s) | 2244 |
| BshFI | GGCC | 4 cut(s) | 1076, 1569, 1608, 1729 |
| BsiHKAI | GWGCWC | 4 cut(s) | 870, 878, 1956, 2608 |
| BslFI | GGGAC | 2 cut(s) | 1949, 2843 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 39, 2024, 2352 |
| BsmAI | GTCTC | 4 cut(s) | 345, 881, 972, 2839 |
| BsmBI | CGTCTC | 1 cut(s) | 2839 |
| BsmFI | GGGAC | 2 cut(s) | 1949, 2843 |
| BsmI | GAATGC | 3 cut(s) | 150, 818, 2388 |
| BsnI | GGCC | 4 cut(s) | 1076, 1569, 1608, 1729 |
| Bsp1286I | GDGCHC | 7 cut(s) | 45, 870, 878, 1683, 1956, 2608, 2843 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 827 |
| BspANI | GGCC | 4 cut(s) | 1076, 1569, 1608, 1729 |
| BspCNI | CTCAG | 5 cut(s) | 467, 840, 1471, 2376, 2490 |
| BspFNI | CGCG | 1 cut(s) | 2244 |
| BspHI | TCATGA | 3 cut(s) | 229, 883, 1743 |
| BspLI | GGNNCC | 4 cut(s) | 385, 1211, 1937, 2051 |
| BspMAI | CTGCAG | 5 cut(s) | 744, 1639, 1885, 2724, 2731 |
| BspPI | GGATC | 5 cut(s) | 478, 1062, 2044, 2057, 2516 |
| BspQI | GCTCTTC | 1 cut(s) | 1359 |
| BspTI | CTTAAG | 1 cut(s) | 2372 |
| BsrDI | GCAATG | 5 cut(s) | 846, 1188, 1372, 2112, 2634 |
| BsrI | ACTGG | 8 cut(s) | 151, 871, 1334, 1444, 2029, 2185, 2219, 2308 |
| BssECI | CCNNGG | 5 cut(s) | 379, 407, 1360, 1976, 2818 |
| BssNAI | GTATAC | 2 cut(s) | 119, 524 |
| BssNI | GRCGYC | 2 cut(s) | 376, 2832 |
| BssSI | CACGAG | 1 cut(s) | 2836 |
| BssT1I | CCWWGG | 3 cut(s) | 407, 1360, 1976 |
| Bst1107I | GTATAC | 2 cut(s) | 119, 524 |
| Bst2BI | CACGAG | 1 cut(s) | 2836 |
| Bst2UI | CCWGG | 2 cut(s) | 381, 2659 |
| Bst4CI | ACNGT | 9 cut(s) | 179, 236, 425, 983, 1458, 1521, 2614, 2859, 2893 |
| Bst6I | CTCTTC | 8 cut(s) | 160, 885, 1121, 1359, 1737, 1794, 1917, 2310 |
| BstACI | GRCGYC | 2 cut(s) | 376, 2832 |
| BstAFI | CTTAAG | 1 cut(s) | 2372 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1187, 2719 |
| BstBAI | YACGTR | 2 cut(s) | 122, 2201 |
| BstDEI | CTNAG | 7 cut(s) | 454, 827, 1479, 1736, 2384, 2498, 2949 |
| BstF5I | GGATG | 8 cut(s) | 136, 469, 922, 1066, 1298, 1801, 1810, 1937 |
| BstFNI | CGCG | 1 cut(s) | 2244 |
| BstHHI | GCGC | 1 cut(s) | 2244 |
| BstMAI | GTCTC | 4 cut(s) | 345, 881, 972, 2839 |
| BstNI | CCWGG | 2 cut(s) | 381, 2659 |
| BstNSI | RCATGY | 3 cut(s) | 839, 2032, 2081 |
| BstSCI | CCNGG | 2 cut(s) | 379, 2657 |
| BstSFI | CTRYAG | 7 cut(s) | 429, 740, 1305, 1635, 1881, 2720, 2727 |
| BstSLI | GKGCMC | 6 cut(s) | 45, 870, 878, 1683, 2608, 2843 |
| BstUI | CGCG | 1 cut(s) | 2244 |
| BstV2I | GAAGAC | 2 cut(s) | 723, 1403 |
| BstX2I | RGATCY | 4 cut(s) | 470, 1551, 2049, 2376 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 808 |
| BstYI | RGATCY | 4 cut(s) | 470, 1551, 2049, 2376 |
| BstZ17I | GTATAC | 2 cut(s) | 119, 524 |
| BsuI | GTATCC | 1 cut(s) | 22 |
| BsuRI | GGCC | 4 cut(s) | 1076, 1569, 1608, 1729 |
| BtsCI | GGATG | 8 cut(s) | 136, 469, 922, 1066, 1298, 1801, 1810, 1937 |
| BtsI | GCAGTG | 5 cut(s) | 288, 1878, 2100, 2560, 2913 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2087 |
| CciI | TCATGA | 3 cut(s) | 229, 883, 1743 |
| CfoI | GCGC | 1 cut(s) | 2244 |
| Cfr13I | GGNCC | 4 cut(s) | 798, 1074, 1936, 2279 |
| CseI | GACGC | 2 cut(s) | 384, 2375 |
| Csp6I | GTAC | 4 cut(s) | 328, 421, 2807, 2889 |
| CviQI | GTAC | 4 cut(s) | 328, 421, 2807, 2889 |
| DdeI | CTNAG | 7 cut(s) | 454, 827, 1479, 1736, 2384, 2498, 2949 |
| DraI | TTTAAA | 2 cut(s) | 396, 2154 |
| EaeI | YGGCCR | 1 cut(s) | 1567 |
| Eam1104I | CTCTTC | 8 cut(s) | 160, 885, 1121, 1359, 1737, 1794, 1917, 2310 |
| EarI | CTCTTC | 8 cut(s) | 160, 885, 1121, 1359, 1737, 1794, 1917, 2310 |
| Ecl136II | GAGCTC | 1 cut(s) | 1954 |
| Eco130I | CCWWGG | 3 cut(s) | 407, 1360, 1976 |
| Eco24I | GRGCYC | 1 cut(s) | 1956 |
| Eco32I | GATATC | 1 cut(s) | 492 |
| Eco47I | GGWCC | 3 cut(s) | 798, 1936, 2279 |
| Eco53kI | GAGCTC | 1 cut(s) | 1954 |
| Eco57I | CTGAAG | 3 cut(s) | 1236, 1581, 1983 |
| EcoICRI | GAGCTC | 1 cut(s) | 1954 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1936 |
| EcoRII | CCWGG | 2 cut(s) | 379, 2657 |
| EcoRV | GATATC | 1 cut(s) | 492 |
| EcoT14I | CCWWGG | 3 cut(s) | 407, 1360, 1976 |
| EcoT22I | ATGCAT | 1 cut(s) | 2112 |
| EcoT38I | GRGCYC | 1 cut(s) | 1956 |
| ErhI | CCWWGG | 3 cut(s) | 407, 1360, 1976 |
| Esp3I | CGTCTC | 1 cut(s) | 2839 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1405, 1437 |
| FaqI | GGGAC | 2 cut(s) | 1949, 2843 |
| FauI | CCCGC | 2 cut(s) | 1363, 2237 |
| FauNDI | CATATG | 1 cut(s) | 2803 |
| FblI | GTMKAC | 2 cut(s) | 118, 523 |
| FokI | GGATG | 8 cut(s) | 143, 476, 929, 1073, 1285, 1808, 1817, 1944 |
| FriOI | GRGCYC | 1 cut(s) | 1956 |
| FspBI | CTAG | 6 cut(s) | 257, 309, 1001, 1526, 1995, 2424 |
| GlaI | GCGC | 1 cut(s) | 2243 |
| GsaI | CCCAGC | 1 cut(s) | 916 |
| GsuI | CTGGAG | 2 cut(s) | 1289, 2202 |
| HaeIII | GGCC | 4 cut(s) | 1076, 1569, 1608, 1729 |
| HgaI | GACGC | 2 cut(s) | 384, 2375 |
| HhaI | GCGC | 1 cut(s) | 2244 |
| Hin1I | GRCGYC | 2 cut(s) | 376, 2832 |
| Hin6I | GCGC | 1 cut(s) | 2242 |
| HinP1I | GCGC | 1 cut(s) | 2242 |
| HincII | GTYRAC | 1 cut(s) | 1849 |
| HindII | GTYRAC | 1 cut(s) | 1849 |
| HindIII | AAGCTT | 1 cut(s) | 860 |
| HphI | GGTGA | 7 cut(s) | 191, 527, 773, 1733, 1832, 1841, 1919 |
| Hpy166II | GTNNAC | 9 cut(s) | 119, 524, 644, 868, 876, 1603, 1849, 2282, 2606 |
| Hpy188I | TCNGA | 7 cut(s) | 106, 164, 457, 995, 2118, 2385, 2774 |
| Hpy8I | GTNNAC | 9 cut(s) | 119, 524, 644, 868, 876, 1603, 1849, 2282, 2606 |
| Hpy99I | CGWCG | 2 cut(s) | 378, 2369 |
| HpyCH4III | ACNGT | 9 cut(s) | 179, 236, 425, 983, 1458, 1521, 2614, 2859, 2893 |
| HpyCH4IV | ACGT | 4 cut(s) | 121, 1851, 2200, 2832 |
| HpyF3I | CTNAG | 7 cut(s) | 454, 827, 1479, 1736, 2384, 2498, 2949 |
| HpySE526I | ACGT | 4 cut(s) | 121, 1851, 2200, 2832 |
| Hsp92I | GRCGYC | 2 cut(s) | 376, 2832 |
| HspAI | GCGC | 1 cut(s) | 2242 |
| LguI | GCTCTTC | 1 cut(s) | 1359 |
| LmnI | GCTCC | 9 cut(s) | 1540, 1834, 1951, 1959, 2020, 2221, 2364, 2533, 2539 |
| LweI | GCATC | 7 cut(s) | 520, 661, 1078, 1307, 1455, 1864, 2911 |
| MaeI | CTAG | 6 cut(s) | 257, 309, 1001, 1526, 1995, 2424 |
| MaeII | ACGT | 4 cut(s) | 121, 1851, 2200, 2832 |
| MaeIII | GTNAC | 2 cut(s) | 133, 2333 |
| MfeI | CAATTG | 1 cut(s) | 1311 |
| MflI | RGATCY | 4 cut(s) | 470, 1551, 2049, 2376 |
| MhlI | GDGCHC | 7 cut(s) | 45, 870, 878, 1683, 1956, 2608, 2843 |
| MlsI | TGGCCA | 1 cut(s) | 1569 |
| MluNI | TGGCCA | 1 cut(s) | 1569 |
| MlyI | GAGTC | 4 cut(s) | 406, 937, 1749, 2701 |
| MmeI | TCCRAC | 5 cut(s) | 526, 1682, 2042, 2292, 2649 |
| Mox20I | TGGCCA | 1 cut(s) | 1569 |
| Mph1103I | ATGCAT | 1 cut(s) | 2112 |
| MroXI | GAANNNNTTC | 3 cut(s) | 578, 1208, 1653 |
| MscI | TGGCCA | 1 cut(s) | 1569 |
| MseI | TTAA | 9 cut(s) | 252, 395, 618, 1485, 1548, 1691, 2153, 2373, 2453 |
| MslI | CAYNNNNRTG | 3 cut(s) | 234, 1168, 2105 |
| Msp20I | TGGCCA | 1 cut(s) | 1569 |
| MspA1I | CMGCKG | 3 cut(s) | 224, 557, 2087 |
| MspCI | CTTAAG | 1 cut(s) | 2372 |
| MspR9I | CCNGG | 2 cut(s) | 381, 2659 |
| MunI | CAATTG | 1 cut(s) | 1311 |
| Mva1269I | GAATGC | 3 cut(s) | 150, 818, 2388 |
| MvaI | CCWGG | 2 cut(s) | 381, 2659 |
| MvnI | CGCG | 1 cut(s) | 2244 |
| NdeI | CATATG | 1 cut(s) | 2803 |
| NlaIV | GGNNCC | 4 cut(s) | 385, 1211, 1937, 2051 |
| NmeAIII | GCCGAG | 1 cut(s) | 2689 |
| NsiI | ATGCAT | 1 cut(s) | 2112 |
| NspI | RCATGY | 3 cut(s) | 839, 2032, 2081 |
| PaeI | GCATGC | 2 cut(s) | 839, 2032 |
| PagI | TCATGA | 3 cut(s) | 229, 883, 1743 |
| PciSI | GCTCTTC | 1 cut(s) | 1359 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1611 |
| PctI | GAATGC | 3 cut(s) | 150, 818, 2388 |
| PdmI | GAANNNNTTC | 3 cut(s) | 578, 1208, 1653 |
| PfeI | GAWTC | 7 cut(s) | 187, 211, 579, 1254, 2133, 2255, 2420 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2024 |
| PleI | GAGTC | 4 cut(s) | 406, 937, 1748, 2700 |
| PpsI | GAGTC | 4 cut(s) | 406, 937, 1748, 2700 |
| Ppu21I | YACGTR | 2 cut(s) | 122, 2201 |
| PpuMI | RGGWCCY | 1 cut(s) | 1936 |
| PsiI | TTATAA | 1 cut(s) | 2459 |
| Psp124BI | GAGCTC | 1 cut(s) | 1956 |
| Psp5II | RGGWCCY | 1 cut(s) | 1936 |
| Psp6I | CCWGG | 2 cut(s) | 379, 2657 |
| PspFI | CCCAGC | 1 cut(s) | 912 |
| PspGI | CCWGG | 2 cut(s) | 379, 2657 |
| PspN4I | GGNNCC | 4 cut(s) | 385, 1211, 1937, 2051 |
| PspPI | GGNCC | 4 cut(s) | 798, 1074, 1936, 2279 |
| PspPPI | RGGWCCY | 1 cut(s) | 1936 |
| PstI | CTGCAG | 5 cut(s) | 744, 1639, 1885, 2724, 2731 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2087 |
| PsuI | RGATCY | 4 cut(s) | 470, 1551, 2049, 2376 |
| PvuII | CAGCTG | 3 cut(s) | 224, 557, 2087 |
| RsaI | GTAC | 4 cut(s) | 329, 422, 2808, 2890 |
| RsaNI | GTAC | 4 cut(s) | 328, 421, 2807, 2889 |
| RseI | CAYNNNNRTG | 3 cut(s) | 234, 1168, 2105 |
| SacI | GAGCTC | 1 cut(s) | 1956 |
| SapI | GCTCTTC | 1 cut(s) | 1359 |
| SaqAI | TTAA | 9 cut(s) | 252, 395, 618, 1485, 1548, 1691, 2153, 2373, 2453 |
| Sau96I | GGNCC | 4 cut(s) | 798, 1074, 1936, 2279 |
| SchI | GAGTC | 4 cut(s) | 406, 937, 1749, 2701 |
| ScrFI | CCNGG | 2 cut(s) | 381, 2659 |
| SduI | GDGCHC | 7 cut(s) | 45, 870, 878, 1683, 1956, 2608, 2843 |
| SfaNI | GCATC | 7 cut(s) | 520, 661, 1078, 1307, 1455, 1864, 2911 |
| SfcI | CTRYAG | 7 cut(s) | 429, 740, 1305, 1635, 1881, 2720, 2727 |
| SinI | GGWCC | 3 cut(s) | 798, 1936, 2279 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 234, 1168, 2105 |
| SmlI | CTYRAG | 3 cut(s) | 34, 2372, 2871 |
| SmoI | CTYRAG | 3 cut(s) | 34, 2372, 2871 |
| SphI | GCATGC | 2 cut(s) | 839, 2032 |
| SspI | AATATT | 2 cut(s) | 962, 1282 |
| SspMI | CTAG | 6 cut(s) | 257, 309, 1001, 1526, 1995, 2424 |
| SstI | GAGCTC | 1 cut(s) | 1956 |
| StyD4I | CCNGG | 2 cut(s) | 379, 2657 |
| StyI | CCWWGG | 3 cut(s) | 407, 1360, 1976 |
| TaaI | ACNGT | 9 cut(s) | 179, 236, 425, 983, 1458, 1521, 2614, 2859, 2893 |
| TaiI | ACGT | 4 cut(s) | 124, 1854, 2203, 2835 |
| TaqI | TCGA | 2 cut(s) | 373, 2956 |
| TatI | WGTACW | 1 cut(s) | 2888 |
| TauI | GCSGC | 2 cut(s) | 1669, 2665 |
| TfiI | GAWTC | 7 cut(s) | 187, 211, 579, 1254, 2133, 2255, 2420 |
| Tru1I | TTAA | 9 cut(s) | 252, 395, 618, 1485, 1548, 1691, 2153, 2373, 2453 |
| Tru9I | TTAA | 9 cut(s) | 252, 395, 618, 1485, 1548, 1691, 2153, 2373, 2453 |
| TspGWI | ACGGA | 2 cut(s) | 586, 1109 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2024 |
| Vha464I | CTTAAG | 1 cut(s) | 2372 |
| VneI | GTGCAC | 3 cut(s) | 866, 874, 2604 |
| VpaK11BI | GGWCC | 3 cut(s) | 798, 1936, 2279 |
| XapI | RAATTY | 3 cut(s) | 335, 765, 1405 |
| XceI | RCATGY | 3 cut(s) | 839, 2032, 2081 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1258, 2665 |
| XmiI | GTMKAC | 2 cut(s) | 118, 523 |
| XmnI | GAANNNNTTC | 3 cut(s) | 578, 1208, 1653 |
| XspI | CTAG | 6 cut(s) | 257, 309, 1001, 1526, 1995, 2424 |
| ZraI | GACGTC | 1 cut(s) | 2833 |
| Zsp2I | ATGCAT | 1 cut(s) | 2112 |