Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Forward (+)

12649237 .. 12660296

Gene Structure 11060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032256

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5088 bp

ATGAAGAGCGTCGCCAATTTCATACACTGCTTGCTGCTCACGGAAGTTCATTTCTTTCTTTTCGACGAGGTGGCTAGTTATGTAGACTGTGATAGATGTTTAGAGACTACCCTGTGTGAGTCTTACAGGCTATCTGAACTTACGCCAGCTGAGGTTCAGAACCTCAAGGCTCGTCCTAGGATTGACTTCTCTTCAATTTTAAGCACGGTCAACCCAATTGTAGATGATATTCGCAATAGAGGTGATGCTGCTGTTAAGGATTATACTGCAAAGTTTGACAAAGTTGAACTGGATAAGATAGTTGTAGAAGTATCTGAGCTTCCAGATCCAGAGCTTGATCCTTCTGTTAAAGAAGCATTTGACGTGGCATATGACAATATATATGCATTTCATTTTTCTCAGAAGTCAGCGGAGAGAACTGTTGAGAATATGAAGGGTGTCAAATGTAAACGAGTAGCAAGAAGTATTGGTTCTGTAGGTCTTTATGTTCCAGGAGGAACTGCAGTTTTACCTTCTACTGCTCTGATGCTTGCAGTTCCTGCTCAGATTGCTGGATCTAAAACCGTTGTACTTGCAACTCCCCCAAGTCGGGATGGCAGTATATGCAAGGAAGTACTCTACTGTGCTAAGAAGGCTGGTGTTACTCACATCCTTAAAGCTGGTGGTGCTCAGGCAATATCTGCTATGGCTTGGGGTACAGAATCTTGCCCTAAGGTCGATAAAATTTTTGGCCCTGGAAATCAGTATGTCACGGCAGCAAAAATGATTCTCCAAAATAGTGAAGCCATGATCTCAATTGACATGCCAGCTGGCCCTTCCGAAGTTTTGGTCATTGCGGACAAGCATGCCAGTCCTGTTCATGTAGCTGCAGATTTACTTTCTCAGGCTGAGCATGGCCCTGATAGTCAAGTTGTTCTTGTAATTGCTGGGGATGGTGTTGATATTAAAGCTATAGAGGAGGAAGTTAAGAAGCAGTGTGACAGCTTACCAAGGGGAGATTTTGCCTCAAAAGCACTGAGCCACAGTTTCACAGTGTTTGCTTGTGATATGGTTGAGGCTGTGTCTTTTTCAAACTTATATGCACCCGAGCATCTGATCATCAATGTCAATGATGCAGAAAAGTGGGAGAGTTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGGCCATGGACTCCAGAGAGTGCTGGAGATTATGCAAGTGGGACAAACCATGTCCTTCCAACATATGGTTATGCGCGGATGTATGGTGGTGTGTCTTTAGACTCCTTCCTTAAGTACATGACTGTACAGTCTCTAACAGAGGAAGGTCTGCAGAAGCTTGGCCCCTATGTAGCCACAATGGCTGAAGTTGAGGGATTAGATGCGCACAAGAGAGCCGTAACCCTTAGACTTAAAGATATCGAAGCTAGGCAGGTTCCAAATAGCAGATCTGAGATGCTGACGAAATTCGAGACCAAGAGTAACCGTGTCAAGGGGCTGAGCTTCCACAGCAAGAGGCCATGGATCTTGGCGAGTCTTCACAGCGGTGTGATCCAGCTCTGGGATTACCGCATGGGCACTCTCATCGACCGCTTTGACGAGCACGATGGCCCCGTCCGTGGCGTCCATTTCCACACCTCTCAGCCTCTCTTCGTCTCCGGAGGGGATGATTACAAGATCAAGGTGTGGAATTATAAGTTGCACAGGTGCCTGTTTACTCTTCTTGGACACCTTGATTACATCCGTACCGTTCAATTCCATCATGAGTACCCTTGGATTGTGAGTGCCAGTGATGACCAGACTATCAGAATATGGAATTGGCAGTCCCGGACTTGTATTTCTGTGCTCACTGGACACAACCATTACGTCATGTGTGCCTTGTTTCATCCCAAGGAGGATCTTGTTGTCTCAGCATCATTGGATCAAACTGTTCGTGTTTGGGATATTGGTGCACTCAGGAAGAAAACGGTTGCGCCTGCAGATGACATCCTACGACTGAGTCAAATGAATGCAGATTTCTTTGGTGGAGTTGATGCTGTTGTTAAGTATGTCTTGGAAGGCCATGATCGGGGTGTTAATTGGGCCTCGTTCCATCCTACACTCCCTCTGATTGTGTCTGGAGCTGATGATCGACAAGTGAAACTTTGGCGAATGAATGATACAAAGGCTTGGGAGGTGGACACTTTAAGGGGGCACATGAACAATGTATCATGTGTTTTATTCCATGCGAGGCAGGATATTATTGTTTCCAATTCAGAGGATAGGAGTATCCGGGTCTGGGATGCCACAAAAAGAACTGGTCTTCAGACATTTCGCAGAGAGCATGATAGGTTCTGGATTCTATCAGCACACCCTGAAATGAACCTTTTGGCTGCTGGTCATGATAGTGGCATGATTGTCTTTAAATTGGAGAGAGAACGTCCTGCCTTTTCTGTCAGTGGTGATTCTATGTACTATGTCAAAGATCGTTTTCTCCGCTTTTATGAGTTCTCAAACCAGAGAGACACTCAGGTTATCCCTATACGAAGGCCCGGTTCTTCCACCTTGAATCAAGGGGCTAAAACTCTATCTTATAGCCCTACAGAAAATGCTGTTTTGATCTGTTCAGATACGGAAGGGGGTTCCTATGAACTATACATAATTCCCAAAGAAAGCTATGGTCGGGGTGATACTGGGCAGGACGCAAAAAGAGGAGTCGGAGGGCCAGCGGTTTTTGTGGCTCGAAATAGATTTGCTGTGCTTGAAAAAAGCACCAACCAAGTCTTAGTTAAAAATCTGAAAAATGAGATTATCAAGAAGAGTGCCCTTCCTTTTGTTGCTGATGCAATATATTATGCTGGAACTGGAAACTTGCTCTGCAGGGCTGAGGATAGAGTTGTCATTTTTGACCTGCAGCAGAGAATTATTCTTGGGGAGCTTCAAACTCCTTTTGTAAGGTACATAGTTTGGTCAAATGACATGGAGAACATTGCTTTACTCAGCAAACATTCAATTGTGATAGCCAATAAGAAGCTTGTTCATCAATGCACCCTGCATGAGACCATTCGTGTAAAGAGTGGAGCTTGGGATGACCATGGTGTCTTCATATATACAACTCTGAACCATATCAAGTACTGTCTTCCTAATGGGGACAGTGGAATCATTAGGACCCTTGATGTTCCCGTTTATATAACAAAGGTGTATGGAAGCACCATACATTGCTTGGATAGAGATGGGAAGAACTGTGCAATTGTTGTTGATGCAACAGAATATGTTTTTAAGTTGTCCTTACTGAAGAAGAGGTACGACCAGGTTATGAGCATGATTAGGAGCTCTGAGCTCTGTGGCCAGGCCATGATTGCATATCTACAGCAGAAAGGTTTCCCTGAGGTTGCCCTTCATTTTGTGAAGGATGAGAGGACTCGCTTCAACTTGGCACTAGGGAGTGGAAACATACAGATTGCTGTTGCTTCTGCTAAGGAAATTGATGAGAAAGATCACTGGTATCGGTTGGGAGTTGAGGCTCTTCGACAAGGTAATTCAGGTATTGTAGAATATGCATATCAGAGGACAAAGAATTTTGAGAGGCTATCATTCCTATATCTTGTTACTGGAAACTTGGATAAGTTATCCAAAATGCTGAAAATTGCTGAAGTGAAGAATGATGTGATGGGCCAGTTCCACAATGCTCTATATTTGGGTGACATCGGGGAGCGTGTTAAGATATTGGAGAATGCTGGGCATTTACCTCTTGCATATGCTACAGCTAAAGCTCATGGCCTCCAAGATATTGCTGAACGGTTGGCAGGTGAGCTGGGAGATAATGTTCCTATTTTACCTGAAGGAAAGTCACCATCTCTTCTGGTACCTCCTAGCCCAATCATCTGCGGTGGAGATTGGCCCTTGTTGAGGGTCATGAGAGGAATATTTGAGGGTGGTCTTGATAATGTGGGCAGAAATGCTGAGGAAGAATATGAGGAGGCTGCAGATGCTGATTGGGGAGAGGATTTGGATATTGTTGATGTGGAAAACATTCAGAATGGAGACATTACTGCAGTGCTGGAAGATGAGGAAGCACATGAGGAAAATGAAGAGGGAGGGTGGGATCTTGAAAATCTTGAACTTCCACCCGAGATTGATACTCCTAAAACTGCCAACAATGCCCGTGCTTCTGTGTTTGTTGCCCCAACTCCAGGTATGCCTGTAAGTCAAATTTGGAGCCAAAAATCTTCTCTTGCTGCTGAACATGCAGCAGCTGGGAATTTTGATATTGCAATGCGATTATTGAGCCGGCAGCTGGGAATAAAGAACTTTGCACCCTTAAAACAATTGTTTCTTGACTTGCACACGGGGAGTCATACGTATTTACGCGCCTTATCGACAGCTCCTGTGATCTCCTTGGCTATTGAGAGGGGATGGAGTGAATCAGTAAGCCCTAATGTTAGGAGCCCTCCTGCTTTGGTTTTTAAATTCTCAGACCTGGAAGAGAAGCTTAAGGCAGGCTACAAGGCCACAACTACAGGGAAATTTACTGAGGCTTTACGACTTCTACTTGGTATTCTGCACACTATTCCTCTGGTTGTAGTTGATACAAGGAGAGAGGTTGATGAAGTAAAGGAATTAATTATCATTGTAAGGGAATATGTTCTGGGTTTGAAGATGGAGCTTAAGAGGAGGGAGGTTAAAGATAATCCAGTTCGTCAACAGGAGCTAGCAGCTTACTTCACCCACTGTAACCTCCAGCTGCCTCACTTGAGACTAGCATTACTGAACGCCATGACTGTGTGCTACAAGGCTGGTAATCTCAACACAGCTGGTAACTTTGCCAGGCGACTATTGGAGACCAATCCCACAAATGAAAACCAAGCAAAGACTGCAAGGCAAGTCCTGCAGGCTGCTGAGAAGAACATGAATGATGCAACCCAGCTCAATTATGATTTCAGAAATCCATTTGTGGTTTGTGGGGCAACATATGTGCCTATTTACCGAGGACAGAAGGATGTGTCATGCCCGTACTGTAGTTCTCGGTTTGTTCCTGCTCAGGAAGGCCAGCTCTGTACTGTTTGCGATCTTGCAGTTGTTGGATCTGATGCATCTGGGTTACTCTGCTCTCCGTCCCAGATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

1696

Amino Acids

188.54

Weight (kDa)

6.04

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histidinol_dh	PF00815	58 - 464	5.4e-156	Histidinol dehydrogenase
WD40_CDC20-Fz	PF24807	469 - 640	3.9e-16	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	476 - 567	2e-10	WDR5 beta-propeller domain
WDR55	PF24796	476 - 644	1.3e-12	WDR55
Beta-prop_WDR3_1st	PF25173	477 - 642	4.8e-32	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	478 - 557	4.6e-09	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	478 - 605	1.4e-17	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	488 - 561	7.7e-06	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	491 - 618	1.7e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	503 - 600	4.6e-07	G protein beta WD-40 repeat protein
WD40	PF00400	520 - 557	1e-05	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	527 - 643	9.1e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	528 - 644	9.5e-08	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	530 - 607	3.4e-09	WDHD1 first WD40 domain
WD40_Prp19	PF24814	538 - 645	1e-19	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	549 - 644	9.9e-27	WDR5 beta-propeller domain
WD40	PF00400	562 - 599	4.4e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	566 - 641	2.5e-08	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	569 - 640	2.8e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	574 - 644	5.6e-12	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	586 - 644	3.3e-12	THOC3 beta-propeller domain
WD40	PF00400	604 - 641	9.3e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	667 - 782	5e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	673 - 792	2.8e-17	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	674 - 786	2.8e-20	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	674 - 795	6.2e-18	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	675 - 770	9.3e-07	TEP-1 second beta-propeller
WD40	PF00400	676 - 709	4.3e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	680 - 792	1e-08	WDR3 second beta-propeller domain
WDR55	PF24796	685 - 793	1.6e-08	WDR55
Beta-prop_THOC3	PF25174	686 - 794	5.8e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	689 - 764	1.1e-08	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	690 - 797	4e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	701 - 798	1.5e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	719 - 754	2.4e-06	WD domain, G-beta repeat
B-prop_COPA_B_2nd	PF04053	818 - 1062	2e-63	COPA/B second beta-propeller
TPR_COPA_B	PF23953	1104 - 1249	3.4e-18	COPA/B TPR domain
COPI_C	PF06957	1293 - 1695	8.9e-172	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1674
AarI	CACCTGC	1 cut(s)	3755
AasI	GACNNNNNNGTC	2 cut(s)	1288, 3056
Acc16I	TGCGCA	1 cut(s)	1365
Acc36I	ACCTGC	4 cut(s)	1136, 1402, 2877, 3755
Acc65I	GGTACC	1 cut(s)	3823
AccB1I	GGYRCC	2 cut(s)	1686, 3823
AccB7I	CCANNNNNTGG	1 cut(s)	1226
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	2 cut(s)	1237, 4329
AccIII	TCCGGA	1 cut(s)	1637
AciI	CCGC	9 cut(s)	410, 836, 1237, 1524, 1549, 1570, 2455, 2687, 3846
AclWI	GGATC	9 cut(s)	320, 332, 562, 1511, 1525, 1884, 1908, 4071, 5050
AcoI	YGGCCR	1 cut(s)	3304
AcsI	RAATTY	7 cut(s)	723, 1445, 3535, 4170, 4219, 4427, 4484
AcuI	CTGAAG	5 cut(s)	1365, 2267, 3272, 3630, 3819
AcyI	GRCGYC	1 cut(s)	1602
AflII	CTTAAG	3 cut(s)	1271, 4451, 4625
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	7 cut(s)	490, 733, 3267, 3306, 4150, 4437, 4784
AjuI	GAANNNNNNNTTGG	2 cut(s)	1780, 1812
AleI	CACNNNNGTG	1 cut(s)	1524
AloI	GAACNNNNNNTCC	2 cut(s)	3768, 3800
Alw21I	GWGCWC	6 cut(s)	670, 1584, 1827, 1933, 3293, 3300
Alw44I	GTGCAC	1 cut(s)	1929
AlwI	GGATC	9 cut(s)	320, 332, 562, 1511, 1525, 1884, 1908, 4071, 5050
AlwNI	CAGNNNCTG	5 cut(s)	539, 1151, 3950, 4214, 4346
Ama87I	CYCGRG	2 cut(s)	1085, 4088
Aor13HI	TCCGGA	1 cut(s)	1637
ApaLI	GTGCAC	1 cut(s)	1929
ApoI	RAATTY	7 cut(s)	723, 1445, 3535, 4170, 4219, 4427, 4484
ArsI	GACNNNNNNTTYG	2 cut(s)	813, 845
AseI	ATTAAT	1 cut(s)	4580
Asp700I	GAANNNNTTC	3 cut(s)	3338, 3990, 4602
Asp718I	GGTACC	1 cut(s)	3823
AspA2I	CCTAGG	1 cut(s)	176
AspLEI	GCGC	4 cut(s)	1237, 1366, 1954, 4331
AsuC2I	CCSGG	3 cut(s)	1807, 2252, 2511
AsuHPI	GGTGA	7 cut(s)	254, 2432, 2657, 3671, 3779, 3801, 4675
AsuNHI	GCTAGC	1 cut(s)	4669
AvaI	CYCGRG	2 cut(s)	1085, 4088
AvaII	GGWCC	1 cut(s)	3126
AvrII	CCTAGG	1 cut(s)	176
AxyI	CCTNAGG	2 cut(s)	711, 3345
BaeGI	GKGCMC	4 cut(s)	1559, 1933, 2175, 2785
BaeI	ACNNNNGTAYC	2 cut(s)	1708, 1741
BalI	TGGCCA	1 cut(s)	3306
BanI	GGYRCC	2 cut(s)	1686, 3823
BanII	GRGCYC	3 cut(s)	3293, 3300, 4409
BarI	GAAGNNNNNNTAC	4 cut(s)	303, 335, 3245, 3277
BbsI	GAAGAC	4 cut(s)	1508, 2273, 3052, 3089
Bbv12I	GWGCWC	6 cut(s)	670, 1584, 1827, 1933, 3293, 3300
BbvCI	CCTCAGC	3 cut(s)	150, 2844, 3921
BceAI	ACGGC	2 cut(s)	768, 1361
BcgI	CGANNNNNNTGC	2 cut(s)	1546, 1580
BciT130I	CCWGG	7 cut(s)	492, 735, 3269, 3308, 4152, 4439, 4786
BciVI	GTATCC	1 cut(s)	2258
BclI	TGATCA	1 cut(s)	1095
BcnI	CCSGG	3 cut(s)	1807, 2252, 2511
BfaI	CTAG	7 cut(s)	75, 177, 1407, 3398, 3831, 4670, 4718
BfrI	CTTAAG	3 cut(s)	1271, 4451, 4625
BfuAI	ACCTGC	4 cut(s)	1136, 1402, 2877, 3755
BfuI	GTATCC	1 cut(s)	2258
BglI	GCCNNNNNGGC	1 cut(s)	1340
BglII	AGATCT	1 cut(s)	1427
BlnI	CCTAGG	1 cut(s)	176
BlpI	GCTNAGC	2 cut(s)	888, 1478
BmcAI	AGTACT	2 cut(s)	615, 3092
Bme18I	GGWCC	1 cut(s)	3126
BmeT110I	CYCGRG	2 cut(s)	1085, 4088
BmgBI	CACGTC	1 cut(s)	364
BmiI	GGNNCC	9 cut(s)	1324, 1416, 1591, 1688, 2602, 3128, 3825, 4178, 4406
BmrI	ACTGGG	1 cut(s)	2661
BmtI	GCTAGC	1 cut(s)	4673
BmuI	ACTGGG	1 cut(s)	2661
BpiI	GAAGAC	4 cut(s)	1508, 2273, 3052, 3089
BplI	GAGNNNNNCTC	2 cut(s)	2470, 2502
BpmI	CTGGAG	5 cut(s)	1158, 1206, 2118, 4134, 4682
Bpu10I	CCTNAGC	6 cut(s)	150, 669, 2844, 3435, 3921, 4998
Bpu1102I	GCTNAGC	2 cut(s)	888, 1478
BpuEI	CTTGAG	2 cut(s)	149, 4732
BpuMI	CCSGG	3 cut(s)	1807, 2252, 2511
BsaAI	YACGTR	1 cut(s)	4320
BsaHI	GRCGYC	1 cut(s)	1602
BsaI	GGTCTC	3 cut(s)	1445, 3011, 4793
BsaWI	WCCGGW	1 cut(s)	1637
BsaXI	ACNNNNNCTCC	2 cut(s)	3768, 3798
Bse118I	RCCGGY	1 cut(s)	4248
Bse21I	CCTNAGG	2 cut(s)	711, 3345
Bse3DI	GCAATG	4 cut(s)	831, 2946, 3175, 4239
BseAI	TCCGGA	1 cut(s)	1637
BseBI	CCWGG	7 cut(s)	492, 735, 3269, 3308, 4152, 4439, 4786
BseMI	GCAATG	4 cut(s)	831, 2946, 3175, 4239
BseRI	GAGGAG	4 cut(s)	971, 2685, 3950, 4645
BseSI	GKGCMC	4 cut(s)	1559, 1933, 2175, 2785
BseYI	CCCAGC	6 cut(s)	926, 3695, 3772, 4214, 4255, 4881
BsgI	GTGCAG	1 cut(s)	4505
Bsh1236I	CGCG	2 cut(s)	1237, 4329
Bsh1285I	CGRYCG	1 cut(s)	1570
BshNI	GGYRCC	2 cut(s)	1686, 3823
BsiEI	CGRYCG	1 cut(s)	1570
BsiHKAI	GWGCWC	6 cut(s)	670, 1584, 1827, 1933, 3293, 3300
BsiHKCI	CYCGRG	2 cut(s)	1085, 4088
BsiSI	CCGG	5 cut(s)	1638, 1807, 2251, 2511, 4249
BslFI	GGGAC	4 cut(s)	1216, 1789, 3122, 5059
BsmBI	CGTCTC	1 cut(s)	1639
BsmFI	GGGAC	4 cut(s)	1216, 1789, 3122, 5059
BsmI	GAATGC	3 cut(s)	1147, 1993, 3697
Bso31I	GGTCTC	3 cut(s)	1445, 3011, 4793
BsoBI	CYCGRG	2 cut(s)	1085, 4088
Bsp13I	TCCGGA	1 cut(s)	1637
Bsp1407I	TGTACA	1 cut(s)	1285
Bsp1720I	GCTNAGC	2 cut(s)	888, 1478
Bsp19I	CCATGG	3 cut(s)	1166, 1499, 3052
BspACI	CCGC	9 cut(s)	410, 836, 1237, 1524, 1549, 1570, 2455, 2687, 3846
BspEI	TCCGGA	1 cut(s)	1637
BspFNI	CGCG	2 cut(s)	1237, 4329
BspHI	TCATGA	3 cut(s)	1741, 2359, 3873
BspLI	GGNNCC	9 cut(s)	1324, 1416, 1591, 1688, 2602, 3128, 3825, 4178, 4406
BspMAI	CTGCAG	9 cut(s)	505, 871, 1314, 1960, 2840, 2874, 3946, 4015, 4851
BspMI	ACCTGC	4 cut(s)	1136, 1402, 2877, 3755
BspOI	GCTAGC	1 cut(s)	4673
BspPI	GGATC	9 cut(s)	320, 332, 562, 1511, 1525, 1884, 1908, 4071, 5050
BspQI	GCTCTTC	1 cut(s)	3489
BspT107I	GGYRCC	2 cut(s)	1686, 3823
BspTI	CTTAAG	3 cut(s)	1271, 4451, 4625
BspTNI	GGTCTC	3 cut(s)	1445, 3011, 4793
BsrDI	GCAATG	4 cut(s)	831, 2946, 3175, 4239
BsrFI	RCCGGY	1 cut(s)	4248
BsrGI	TGTACA	1 cut(s)	1285
BssAI	RCCGGY	1 cut(s)	4248
BssNI	GRCGYC	1 cut(s)	1602
BssT1I	CCWWGG	8 cut(s)	176, 989, 1166, 1499, 1751, 1869, 3052, 4356
Bst2UI	CCWGG	7 cut(s)	492, 735, 3269, 3308, 4152, 4439, 4786
Bst6I	CTCTTC	9 cut(s)	196, 1634, 1704, 2771, 3251, 3489, 3822, 4044, 4437
BstACI	GRCGYC	1 cut(s)	1602
BstAFI	CTTAAG	3 cut(s)	1271, 4451, 4625
BstAPI	GCANNNNNTGC	5 cut(s)	539, 603, 680, 4832, 4846
BstAUI	TGTACA	1 cut(s)	1285
BstBAI	YACGTR	1 cut(s)	4320
BstDSI	CCRYGG	4 cut(s)	1166, 1499, 1597, 3052
BstENI	CCTNNNNNAGG	1 cut(s)	3865
BstFNI	CGCG	2 cut(s)	1237, 4329
BstHHI	GCGC	4 cut(s)	1237, 1366, 1954, 4331
BstMCI	CGRYCG	1 cut(s)	1570
BstNI	CCWGG	7 cut(s)	492, 735, 3269, 3308, 4152, 4439, 4786
BstNSI	RCATGY	3 cut(s)	805, 848, 4208
BstSLI	GKGCMC	4 cut(s)	1559, 1933, 2175, 2785
BstSNI	TACGTA	1 cut(s)	4320
BstUI	CGCG	2 cut(s)	1237, 4329
BstV2I	GAAGAC	4 cut(s)	1508, 2273, 3052, 3089
BstX2I	RGATCY	7 cut(s)	325, 554, 1427, 1503, 1876, 4063, 5042
BstYI	RGATCY	7 cut(s)	325, 554, 1427, 1503, 1876, 4063, 5042
Bsu36I	CCTNAGG	2 cut(s)	711, 3345
BsuI	GTATCC	1 cut(s)	2258
BtgI	CCRYGG	4 cut(s)	1166, 1499, 1597, 3052
BtrI	CACGTC	1 cut(s)	364
BtsI	GCAGTG	3 cut(s)	25, 980, 4020
BveI	ACCTGC	4 cut(s)	1136, 1402, 2877, 3755
CaiI	CAGNNNCTG	5 cut(s)	539, 1151, 3950, 4214, 4346
CciI	TCATGA	3 cut(s)	1741, 2359, 3873
CfoI	GCGC	4 cut(s)	1237, 1366, 1954, 4331
Cfr10I	RCCGGY	1 cut(s)	4248
CseI	GACGC	2 cut(s)	1591, 2669
CsiI	ACCWGGT	1 cut(s)	3267
DraI	TTTAAA	2 cut(s)	2383, 4426
DrdI	GACNNNNNNGTC	2 cut(s)	1288, 3056
DseDI	GACNNNNNNGTC	2 cut(s)	1288, 3056
EaeI	YGGCCR	1 cut(s)	3304
Eam1104I	CTCTTC	9 cut(s)	196, 1634, 1704, 2771, 3251, 3489, 3822, 4044, 4437
EarI	CTCTTC	9 cut(s)	196, 1634, 1704, 2771, 3251, 3489, 3822, 4044, 4437
Ecl136II	GAGCTC	2 cut(s)	3291, 3298
Eco105I	TACGTA	1 cut(s)	4320
Eco130I	CCWWGG	8 cut(s)	176, 989, 1166, 1499, 1751, 1869, 3052, 4356
Eco24I	GRGCYC	3 cut(s)	3293, 3300, 4409
Eco31I	GGTCTC	3 cut(s)	1445, 3011, 4793
Eco32I	GATATC	1 cut(s)	1399
Eco47I	GGWCC	1 cut(s)	3126
Eco53kI	GAGCTC	2 cut(s)	3291, 3298
Eco57I	CTGAAG	5 cut(s)	1365, 2267, 3272, 3630, 3819
Eco81I	CCTNAGG	2 cut(s)	711, 3345
Eco88I	CYCGRG	2 cut(s)	1085, 4088
EcoICRI	GAGCTC	2 cut(s)	3291, 3298
EcoNI	CCTNNNNNAGG	1 cut(s)	3865
EcoO109I	RGGNCCY	1 cut(s)	3126
EcoRII	CCWGG	7 cut(s)	490, 733, 3267, 3306, 4150, 4437, 4784
EcoRV	GATATC	1 cut(s)	1399
EcoT14I	CCWWGG	8 cut(s)	176, 989, 1166, 1499, 1751, 1869, 3052, 4356
EcoT22I	ATGCAT	3 cut(s)	388, 3520, 5053
EcoT38I	GRGCYC	3 cut(s)	3293, 3300, 4409
ErhI	CCWWGG	8 cut(s)	176, 989, 1166, 1499, 1751, 1869, 3052, 4356
Esp3I	CGTCTC	1 cut(s)	1639
FaqI	GGGAC	4 cut(s)	1216, 1789, 3122, 5059
FauNDI	CATATG	4 cut(s)	370, 1225, 3715, 4930
FbaI	TGATCA	1 cut(s)	1095
FblI	GTMKAC	1 cut(s)	84
FriOI	GRGCYC	3 cut(s)	3293, 3300, 4409
FspAI	RTGCGCAY	1 cut(s)	1365
FspBI	CTAG	7 cut(s)	75, 177, 1407, 3398, 3831, 4670, 4718
FspI	TGCGCA	1 cut(s)	1365
GlaI	GCGC	4 cut(s)	1236, 1365, 1953, 4330
GsaI	CCCAGC	6 cut(s)	930, 3699, 3776, 4218, 4259, 4885
GsuI	CTGGAG	5 cut(s)	1158, 1206, 2118, 4134, 4682
HapII	CCGG	5 cut(s)	1638, 1807, 2251, 2511, 4249
HgaI	GACGC	2 cut(s)	1591, 2669
HhaI	GCGC	4 cut(s)	1237, 1366, 1954, 4331
Hin1I	GRCGYC	1 cut(s)	1602
Hin6I	GCGC	4 cut(s)	1235, 1364, 1952, 4329
HinP1I	GCGC	4 cut(s)	1235, 1364, 1952, 4329
HincII	GTYRAC	2 cut(s)	211, 4661
HindII	GTYRAC	2 cut(s)	211, 4661
HindIII	AAGCTT	3 cut(s)	1316, 2990, 4448
HpaII	CCGG	5 cut(s)	1638, 1807, 2251, 2511, 4249
HphI	GGTGA	7 cut(s)	254, 2432, 2657, 3671, 3779, 3801, 4675
Hpy166II	GTNNAC	7 cut(s)	85, 211, 449, 1695, 1931, 2158, 4661
Hpy8I	GTNNAC	7 cut(s)	85, 211, 449, 1695, 1931, 2158, 4661
Hpy99I	CGWCG	2 cut(s)	14, 68
HpyCH4IV	ACGT	4 cut(s)	363, 1845, 2398, 4319
HpySE526I	ACGT	4 cut(s)	363, 1845, 2398, 4319
Hsp92I	GRCGYC	1 cut(s)	1602
HspAI	GCGC	4 cut(s)	1235, 1364, 1952, 4329
Kpn2I	TCCGGA	1 cut(s)	1637
KpnI	GGTACC	1 cut(s)	3827
KroI	GCCGGC	1 cut(s)	4248
KroNI	GCCGGC	1 cut(s)	4250
Ksp22I	TGATCA	1 cut(s)	1095
LguI	GCTCTTC	1 cut(s)	3489
MabI	ACCWGGT	1 cut(s)	3267
MaeI	CTAG	7 cut(s)	75, 177, 1407, 3398, 3831, 4670, 4718
MaeII	ACGT	4 cut(s)	363, 1845, 2398, 4319
MfeI	CAATTG	5 cut(s)	216, 795, 2970, 3207, 4286
MflI	RGATCY	7 cut(s)	325, 554, 1427, 1503, 1876, 4063, 5042
MlsI	TGGCCA	1 cut(s)	3306
MluNI	TGGCCA	1 cut(s)	3306
MlyI	GAGTC	8 cut(s)	128, 1165, 1256, 1522, 1987, 2682, 3373, 4321
MmeI	TCCRAC	3 cut(s)	1244, 2656, 5020
Mox20I	TGGCCA	1 cut(s)	3306
Mph1103I	ATGCAT	3 cut(s)	388, 3520, 5053
MroI	TCCGGA	1 cut(s)	1637
MroNI	GCCGGC	1 cut(s)	4248
MroXI	GAANNNNTTC	3 cut(s)	3338, 3990, 4602
MscI	TGGCCA	1 cut(s)	3306
MslI	CAYNNNNRTG	3 cut(s)	1524, 2364, 4739
Msp20I	TGGCCA	1 cut(s)	3306
MspA1I	CMGCKG	9 cut(s)	149, 410, 809, 1524, 2687, 4214, 4255, 4702, 4772
MspCI	CTTAAG	3 cut(s)	1271, 4451, 4625
MspI	CCGG	5 cut(s)	1638, 1807, 2251, 2511, 4249
MunI	CAATTG	5 cut(s)	216, 795, 2970, 3207, 4286
Mva1269I	GAATGC	3 cut(s)	1147, 1993, 3697
MvaI	CCWGG	7 cut(s)	492, 735, 3269, 3308, 4152, 4439, 4786
MvnI	CGCG	2 cut(s)	1237, 4329
NaeI	GCCGGC	1 cut(s)	4250
NciI	CCSGG	3 cut(s)	1807, 2252, 2511
NcoI	CCATGG	3 cut(s)	1166, 1499, 3052
NdeI	CATATG	4 cut(s)	370, 1225, 3715, 4930
NgoMIV	GCCGGC	1 cut(s)	4248
NheI	GCTAGC	1 cut(s)	4669
NlaIV	GGNNCC	9 cut(s)	1324, 1416, 1591, 1688, 2602, 3128, 3825, 4178, 4406
NmuCI	GTSAC	4 cut(s)	748, 977, 3659, 3807
NsbI	TGCGCA	1 cut(s)	1365
NsiI	ATGCAT	3 cut(s)	388, 3520, 5053
NspI	RCATGY	3 cut(s)	805, 848, 4208
OliI	CACNNNNGTG	1 cut(s)	1524
PaeI	GCATGC	1 cut(s)	848
PagI	TCATGA	3 cut(s)	1741, 2359, 3873
PaqCI	CACCTGC	1 cut(s)	3755
PciSI	GCTCTTC	1 cut(s)	3489
PcsI	WCGNNNNNNNCGW	1 cut(s)	1590
PctI	GAATGC	3 cut(s)	1147, 1993, 3697
PdiI	GCCGGC	1 cut(s)	4250
PdmI	GAANNNNTTC	3 cut(s)	3338, 3990, 4602
PfeI	GAWTC	7 cut(s)	701, 766, 2317, 2423, 2527, 3117, 4382
PflFI	GACNNNGTC	1 cut(s)	1977
PflMI	CCANNNNNTGG	1 cut(s)	1226
PfoI	TCCNGGA	2 cut(s)	490, 1805
PleI	GAGTC	8 cut(s)	127, 1165, 1256, 1521, 1986, 2681, 3373, 4320
PpsI	GAGTC	8 cut(s)	127, 1165, 1256, 1521, 1986, 2681, 3373, 4320
Ppu21I	YACGTR	1 cut(s)	4320
PpuMI	RGGWCCY	1 cut(s)	3126
PshBI	ATTAAT	1 cut(s)	4580
PsiI	TTATAA	1 cut(s)	1674
Psp124BI	GAGCTC	2 cut(s)	3293, 3300
Psp5II	RGGWCCY	1 cut(s)	3126
Psp6I	CCWGG	7 cut(s)	490, 733, 3267, 3306, 4150, 4437, 4784
PspFI	CCCAGC	6 cut(s)	926, 3695, 3772, 4214, 4255, 4881
PspGI	CCWGG	7 cut(s)	490, 733, 3267, 3306, 4150, 4437, 4784
PspN4I	GGNNCC	9 cut(s)	1324, 1416, 1591, 1688, 2602, 3128, 3825, 4178, 4406
PspPPI	RGGWCCY	1 cut(s)	3126
PstI	CTGCAG	9 cut(s)	505, 871, 1314, 1960, 2840, 2874, 3946, 4015, 4851
PstNI	CAGNNNCTG	5 cut(s)	539, 1151, 3950, 4214, 4346
PsuI	RGATCY	7 cut(s)	325, 554, 1427, 1503, 1876, 4063, 5042
PsyI	GACNNNGTC	1 cut(s)	1977
PvuII	CAGCTG	6 cut(s)	149, 809, 4214, 4255, 4702, 4772
RseI	CAYNNNNRTG	3 cut(s)	1524, 2364, 4739
SacI	GAGCTC	2 cut(s)	3293, 3300
SapI	GCTCTTC	1 cut(s)	3489
SbfI	CCTGCAGG	1 cut(s)	4851
ScaI	AGTACT	2 cut(s)	615, 3092
SchI	GAGTC	8 cut(s)	128, 1165, 1256, 1522, 1987, 2682, 3373, 4321
SdaI	CCTGCAGG	1 cut(s)	4851
SexAI	ACCWGGT	1 cut(s)	3267
SinI	GGWCC	1 cut(s)	3126
SmiMI	CAYNNNNRTG	3 cut(s)	1524, 2364, 4739
SmlI	CTYRAG	5 cut(s)	164, 1271, 4451, 4625, 4711
SmoI	CTYRAG	5 cut(s)	164, 1271, 4451, 4625, 4711
SnaBI	TACGTA	1 cut(s)	4320
SphI	GCATGC	1 cut(s)	848
Sse8387I	CCTGCAGG	1 cut(s)	4851
SsiI	CCGC	9 cut(s)	410, 836, 1237, 1524, 1549, 1570, 2455, 2687, 3846
SspI	AATATT	1 cut(s)	3885
SspMI	CTAG	7 cut(s)	75, 177, 1407, 3398, 3831, 4670, 4718
SstI	GAGCTC	2 cut(s)	3293, 3300
StyI	CCWWGG	8 cut(s)	176, 989, 1166, 1499, 1751, 1869, 3052, 4356
TaiI	ACGT	4 cut(s)	366, 1848, 2401, 4322
TaqI	TCGA	9 cut(s)	63, 717, 1401, 1449, 1566, 2110, 2701, 3487, 4337
TatI	WGTACW	7 cut(s)	568, 613, 1275, 1285, 2430, 3090, 5015
TfiI	GAWTC	7 cut(s)	701, 766, 2317, 2423, 2527, 3117, 4382
TseFI	GTSAC	4 cut(s)	748, 977, 3659, 3807
Tsp45I	GTSAC	4 cut(s)	748, 977, 3659, 3807
TspGWI	ACGGA	5 cut(s)	56, 1586, 1712, 2606, 5061
Tth111I	GACNNNGTC	1 cut(s)	1977
Van91I	CCANNNNNTGG	1 cut(s)	1226
Vha464I	CTTAAG	3 cut(s)	1271, 4451, 4625
VneI	GTGCAC	1 cut(s)	1929
VpaK11BI	GGWCC	1 cut(s)	3126
VspI	ATTAAT	1 cut(s)	4580
XagI	CCTNNNNNAGG	1 cut(s)	3865
XapI	RAATTY	7 cut(s)	723, 1445, 3535, 4170, 4219, 4427, 4484
XceI	RCATGY	3 cut(s)	805, 848, 4208
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3178, 4792
XmaJI	CCTAGG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	3 cut(s)	3338, 3990, 4602
XspI	CTAG	7 cut(s)	75, 177, 1407, 3398, 3831, 4670, 4718
ZrmI	AGTACT	2 cut(s)	615, 3092
Zsp2I	ATGCAT	3 cut(s)	388, 3520, 5053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.