Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

82593714 .. 82599524

Gene Structure 5811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGGAGAACATTGCTTTACTCAGCAAACATTCCATTGTGATAGCCAATAAGAAGCTCGTTCATCAATGCACCCTACATGAGACCATTCGTGTAAAGAGTGGAGCTTGGGATGACCACGGTGTCTTCATATATACAACTCTGAACCATATCAAATACTGTCTTCCTAATGGGGACAGTGGAATCATTAGGACCCTTGATGTTCCCGTTTATATAACAAAGGTGTATGGAAGCACCATACATTGCTTGGATCGAGATGGGAAGAACTGTGCAATTGTTGTTGATGCAACAGAATATGTTTTTAAGTTGTCCTTACTGAAGAAGAGGTACGACCAGGTTATGAGCATGATTAGGAGCTCTGAGCTCTGTGGCCAGGCCATGATTGCATATCTACAGCAGAAAGGTTTCCCTGAGGTTGCCCTTCATTTTGTGAAGGATGAGAGGACTCGCTTCAACTTGGCACTAGGGAGTGGAAACATACAGATTGCTGTTGCTTCTGCTAAGGAAATTGATGAGAAAGATCACTGGTATCGTTTGGGAGTTGAGGCTCTTCGTCAAGGTAATTCAGGTATTGTAGAATATGCATATCAGAGGACAAAGAATTTTGAGAGGCTATCATTCCTATATCTTGTTACTGGAAACTTGGATAAGTTATCCAAAATGCTGAAAATCGCTGAAGTGAAGAATGATGTGATGGGCCAGTTCCACAATGCTCTATATTTGGGTGACATCGGGGAGCGTGTTAAGATATTGGAGAATGCTGGGCATTTACCCCTTGCATATGCTACAGCTAAAGCTCATGGCCTCCAAGATATTGCTGAACGGTTGGCAGGTGAGCTGGGAGATAATGTTCCTATTTTACCTGAAGGAAAGTCACCATCTCTTCTGGTACCTCCTAGCCCAATTATCTGTGGTGGAGATTGGCCCTTGTTGAGGGTCATGAGAGGAATATTTGAGGGTGGTCTTGATAATGTGGGCAGAAATGCTGAGGAAGAATATGAGGAGGCTGCAGATGCTGATTGGGGAGAGGATTTGGATATTGTTGATGTGGAAAACATTCAGAATGGAGACATTACTGCAGTGCTGGAAGATGAGGACACACATGAGGAAAATGAAGAGGGAGGGTGGGATCTTGAAGATCTTGAACTTCCACCAGAGATTGATACTCCCAAAACTGCCAACAATGCCCGTGCTTCCGTGTTTGTTGCCCCAACTCCAGGTATGCCTGTAAGTCAAATTTGGAGCCAAAAATCTTCTCTTGCTGCTGAACATGCAGCAGCTGGGAATTTTGATATTGCAATGCGATTATTGAGCCGGCAGCTGGGAATAAAGAACTTTGCACCCTTAAAACAATTGTTTCTTGACTTGCACACGGGGAGTCATTCGTATTTACGCGCCTTATCGACAGCTCCTGTGATCTCCTTGGCTATTGAGAGGGGATGGAGTGAATCAGTAAGCCCTAATGTTAGGAGCCCTCCTGCTTTGGTTTTTAAATTCTCAGACCTGGAAGAGAAGCTTAAGGCGGGCTACAAGGCCACAACTACAGGGAAATTTACTGAGGCTTTACGACTTCTACTCGGTATTCTGCACACTATTCCTCTGGTCGTAGTTGATACAAGGAGAGAGGTTGATGAAGTAAAGGAATTAATTATCATTGTAAGGGAATATGTTCTGGGTTTGAAGATGGAGCTTAAGAGGAGGGAGGTTAAAGATAATCCAGTTCGTCAACAGGAGCTAGCAGCTTACTTCACCCACTGTAACCTCCAGATGCCTCACTTGAGACTAGCATTACTGAACGCCATGACTGTGTGCTACAAGGCTGGTAATCTCAACACAGCTGGTAACTTTGCCAGGCGACTATTGGAGACCAATCCCACAAATGAAAACCAAGCAAAGACTGCAAGGCAAGTCCTGCAGGCTGCTGAGAAGAACATGAATGATGCAACCCAGCTCAATTATGATTTCAGAAATCCATTTGTGGTTTGTGGGGCAACATATGTGCCTATTTACCGAGGACAGAAGGATGTGTCATGCCCGTACTGTAGTTCTCGGTTTGTTCCTGCTCAGGAAGGCCAGCTCTGTACTGTTTGCGATCTTGCAGTTGTTGGATCTGATGCATCTGGGTTACTCTGCTCTCCGTCCCAGATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

716

Amino Acids

79.46

Weight (kDa)

5.72

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B-prop_COPA_B_2nd	PF04053	2 - 83	1.5e-25	COPA/B second beta-propeller
TPR_COPA_B	PF23953	125 - 271	9.6e-19	COPA/B TPR domain
COPI_C	PF06957	314 - 716	7.2e-173	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	818
AasI	GACNNNNNNGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	818
Acc65I	GGTACC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	886
AccII	CGCG	1 cut(s)	1392
AciI	CCGC	1 cut(s)	1520
AclWI	GGATC	3 cut(s)	255, 1134, 2113
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	5 cut(s)	598, 1233, 1282, 1490, 1547
AcuI	CTGAAG	3 cut(s)	335, 693, 882
AfaI	GTAC	4 cut(s)	326, 888, 2036, 2080
AfiI	CCNNNNNNNGG	3 cut(s)	930, 1214, 1318
AflII	CTTAAG	2 cut(s)	1514, 1688
AgsI	TTSAA	4 cut(s)	451, 1133, 1142, 1678
AjnI	CCWGG	5 cut(s)	330, 369, 1213, 1500, 1847
AloI	GAACNNNNNNTCC	2 cut(s)	831, 863
Alw21I	GWGCWC	2 cut(s)	356, 363
Alw26I	GTCTC	4 cut(s)	74, 1059, 1771, 1856
AlwI	GGATC	3 cut(s)	255, 1134, 2113
AlwNI	CAGNNNCTG	3 cut(s)	1013, 1277, 1409
AoxI	GGCC	7 cut(s)	367, 372, 694, 799, 920, 1530, 2068
ApeKI	GCWGC	7 cut(s)	1004, 1259, 1271, 1274, 1315, 1736, 1916
ApoI	RAATTY	5 cut(s)	598, 1233, 1282, 1490, 1547
AseI	ATTAAT	1 cut(s)	1643
Asp700I	GAANNNNTTC	3 cut(s)	401, 1053, 1665
Asp718I	GGTACC	1 cut(s)	886
AspLEI	GCGC	1 cut(s)	1394
AspS9I	GGNCC	3 cut(s)	189, 694, 921
AsuHPI	GGTGA	4 cut(s)	734, 842, 864, 1738
AsuNHI	GCTAGC	1 cut(s)	1732
AvaII	GGWCC	1 cut(s)	189
AxyI	CCTNAGG	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	886
BanII	GRGCYC	3 cut(s)	356, 363, 1472
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbsI	GAAGAC	2 cut(s)	115, 152
Bbv12I	GWGCWC	2 cut(s)	356, 363
BbvCI	CCTCAGC	1 cut(s)	984
BbvI	GCAGC	7 cut(s)	991, 1246, 1283, 1286, 1327, 1748, 1903
BccI	CCATC	5 cut(s)	248, 685, 883, 1431, 1675
BciT130I	CCWGG	5 cut(s)	332, 371, 1215, 1502, 1849
BcoDI	GTCTC	4 cut(s)	74, 1059, 1771, 1856
BfaI	CTAG	4 cut(s)	461, 894, 1733, 1781
BfmI	CTRYAG	7 cut(s)	389, 783, 1005, 1074, 1539, 1910, 2038
BfrI	CTTAAG	2 cut(s)	1514, 1688
BfuAI	ACCTGC	1 cut(s)	818
BglII	AGATCT	1 cut(s)	1135
BisI	GCNGC	7 cut(s)	1005, 1260, 1272, 1275, 1316, 1737, 1917
BlsI	GCNGC	7 cut(s)	1006, 1261, 1273, 1276, 1317, 1738, 1918
Bme1390I	CCNGG	5 cut(s)	332, 371, 1215, 1502, 1849
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	3 cut(s)	189, 694, 921
BmiI	GGNNCC	4 cut(s)	191, 888, 1241, 1469
BmrFI	CCNGG	5 cut(s)	332, 371, 1215, 1502, 1849
BmsI	GCATC	6 cut(s)	271, 1000, 1755, 1927, 2101, 2123
BmtI	GCTAGC	1 cut(s)	1736
BpiI	GAAGAC	2 cut(s)	115, 152
BpmI	CTGGAG	2 cut(s)	1197, 1745
Bpu10I	CCTNAGC	3 cut(s)	498, 984, 2061
BpuEI	CTTGAG	1 cut(s)	1795
BsaI	GGTCTC	2 cut(s)	74, 1856
BsaJI	CCNNGG	3 cut(s)	115, 1419, 2008
BsaXI	ACNNNNNCTCC	2 cut(s)	831, 861
Bsc4I	CCNNNNNNNGG	3 cut(s)	930, 1214, 1318
Bse118I	RCCGGY	1 cut(s)	1311
Bse1I	ACTGG	4 cut(s)	527, 637, 697, 1715
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	3 cut(s)	9, 238, 1302
BseBI	CCWGG	5 cut(s)	332, 371, 1215, 1502, 1849
BseDI	CCNNGG	3 cut(s)	115, 1419, 2008
BseGI	GGATG	4 cut(s)	115, 439, 1442, 2026
BseLI	CCNNNNNNNGG	3 cut(s)	930, 1214, 1318
BseMI	GCAATG	3 cut(s)	9, 238, 1302
BseMII	CTCAG	8 cut(s)	34, 348, 399, 975, 1509, 1545, 1911, 2075
BseNI	ACTGG	4 cut(s)	527, 637, 697, 1715
BseRI	GAGGAG	2 cut(s)	1013, 1708
BseXI	GCAGC	7 cut(s)	991, 1246, 1283, 1286, 1327, 1748, 1903
BseYI	CCCAGC	5 cut(s)	758, 835, 1277, 1318, 1944
BsgI	GTGCAG	1 cut(s)	1568
Bsh1236I	CGCG	1 cut(s)	1392
BshFI	GGCC	7 cut(s)	369, 374, 696, 801, 922, 1532, 2070
BshNI	GGYRCC	1 cut(s)	886
BsiHKAI	GWGCWC	2 cut(s)	356, 363
BsiSI	CCGG	1 cut(s)	1312
BslFI	GGGAC	2 cut(s)	185, 2122
BslI	CCNNNNNNNGG	3 cut(s)	930, 1214, 1318
BsmAI	GTCTC	4 cut(s)	74, 1059, 1771, 1856
BsmFI	GGGAC	2 cut(s)	185, 2122
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	7 cut(s)	369, 374, 696, 801, 922, 1532, 2070
Bso31I	GGTCTC	2 cut(s)	74, 1856
Bsp1286I	GDGCHC	3 cut(s)	356, 363, 1472
Bsp143I	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
BspACI	CCGC	1 cut(s)	1520
BspANI	GGCC	7 cut(s)	369, 374, 696, 801, 922, 1532, 2070
BspCNI	CTCAG	8 cut(s)	33, 349, 400, 976, 1508, 1546, 1912, 2074
BspFNI	CGCG	1 cut(s)	1392
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	4 cut(s)	191, 888, 1241, 1469
BspMAI	CTGCAG	3 cut(s)	1009, 1078, 1914
BspMI	ACCTGC	1 cut(s)	818
BspOI	GCTAGC	1 cut(s)	1736
BspPI	GGATC	3 cut(s)	255, 1134, 2113
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	886
BspTI	CTTAAG	2 cut(s)	1514, 1688
BspTNI	GGTCTC	2 cut(s)	74, 1856
BsrDI	GCAATG	3 cut(s)	9, 238, 1302
BsrFI	RCCGGY	1 cut(s)	1311
BsrI	ACTGG	4 cut(s)	527, 637, 697, 1715
BssAI	RCCGGY	1 cut(s)	1311
BssECI	CCNNGG	3 cut(s)	115, 1419, 2008
BssMI	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
BssT1I	CCWWGG	1 cut(s)	1419
Bst2UI	CCWGG	5 cut(s)	332, 371, 1215, 1502, 1849
Bst4CI	ACNGT	9 cut(s)	119, 158, 176, 266, 822, 1754, 1804, 2039, 2083
Bst6I	CTCTTC	5 cut(s)	314, 552, 885, 1107, 1500
BstAFI	CTTAAG	2 cut(s)	1514, 1688
BstAPI	GCANNNNNTGC	2 cut(s)	1895, 1909
BstC8I	GCNNGC	5 cut(s)	1313, 1522, 1734, 1914, 2072
BstDEI	CTNAG	9 cut(s)	20, 357, 408, 498, 984, 1495, 1554, 1920, 2061
BstDSI	CCRYGG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	928
BstF5I	GGATG	4 cut(s)	115, 439, 1442, 2026
BstFNI	CGCG	1 cut(s)	1392
BstHHI	GCGC	1 cut(s)	1394
BstKTI	GATC	7 cut(s)	250, 520, 1129, 1138, 1416, 2092, 2108
BstMAI	GTCTC	4 cut(s)	74, 1059, 1771, 1856
BstMBI	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
BstMWI	GCNNNNNNNGC	6 cut(s)	380, 1010, 1181, 1268, 1895, 1909
BstNI	CCWGG	5 cut(s)	332, 371, 1215, 1502, 1849
BstNSI	RCATGY	1 cut(s)	1271
BstSCI	CCNGG	5 cut(s)	330, 369, 1213, 1500, 1847
BstSFI	CTRYAG	7 cut(s)	389, 783, 1005, 1074, 1539, 1910, 2038
BstUI	CGCG	1 cut(s)	1392
BstV1I	GCAGC	7 cut(s)	991, 1246, 1283, 1286, 1327, 1748, 1903
BstV2I	GAAGAC	2 cut(s)	115, 152
BstX2I	RGATCY	3 cut(s)	1126, 1135, 2105
BstYI	RGATCY	3 cut(s)	1126, 1135, 2105
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	7 cut(s)	369, 374, 696, 801, 922, 1532, 2070
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	4 cut(s)	115, 439, 1442, 2026
BtsI	GCAGTG	1 cut(s)	1083
BtsIMutI	CAGTG	4 cut(s)	181, 520, 1083, 1750
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	5 cut(s)	1313, 1522, 1734, 1914, 2072
CaiI	CAGNNNCTG	3 cut(s)	1013, 1277, 1409
CciI	TCATGA	1 cut(s)	936
CfoI	GCGC	1 cut(s)	1394
Cfr10I	RCCGGY	1 cut(s)	1311
Cfr13I	GGNCC	3 cut(s)	189, 694, 921
CsiI	ACCWGGT	1 cut(s)	330
Csp6I	GTAC	4 cut(s)	325, 887, 2035, 2079
CviQI	GTAC	4 cut(s)	325, 887, 2035, 2079
DdeI	CTNAG	9 cut(s)	20, 357, 408, 498, 984, 1495, 1554, 1920, 2061
DpnI	GATC	7 cut(s)	249, 519, 1128, 1137, 1415, 2091, 2107
DpnII	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
DraI	TTTAAA	1 cut(s)	1489
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	5 cut(s)	314, 552, 885, 1107, 1500
EarI	CTCTTC	5 cut(s)	314, 552, 885, 1107, 1500
Ecl136II	GAGCTC	2 cut(s)	354, 361
Eco130I	CCWWGG	1 cut(s)	1419
Eco24I	GRGCYC	3 cut(s)	356, 363, 1472
Eco31I	GGTCTC	2 cut(s)	74, 1856
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	2 cut(s)	354, 361
Eco57I	CTGAAG	3 cut(s)	335, 693, 882
Eco81I	CCTNAGG	1 cut(s)	408
EcoICRI	GAGCTC	2 cut(s)	354, 361
EcoNI	CCTNNNNNAGG	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	5 cut(s)	330, 369, 1213, 1500, 1847
EcoT14I	CCWWGG	1 cut(s)	1419
EcoT22I	ATGCAT	2 cut(s)	583, 2116
EcoT38I	GRGCYC	3 cut(s)	356, 363, 1472
ErhI	CCWWGG	1 cut(s)	1419
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 1497, 1529
FaqI	GGGAC	2 cut(s)	185, 2122
FauI	CCCGC	1 cut(s)	1513
FauNDI	CATATG	2 cut(s)	778, 1993
Fnu4HI	GCNGC	7 cut(s)	1005, 1260, 1272, 1275, 1316, 1737, 1917
FokI	GGATG	4 cut(s)	122, 446, 1449, 2033
FriOI	GRGCYC	3 cut(s)	356, 363, 1472
Fsp4HI	GCNGC	7 cut(s)	1005, 1260, 1272, 1275, 1316, 1737, 1917
FspBI	CTAG	4 cut(s)	461, 894, 1733, 1781
GlaI	GCGC	1 cut(s)	1393
GluI	GCNGC	7 cut(s)	1005, 1260, 1272, 1275, 1316, 1737, 1917
GsaI	CCCAGC	5 cut(s)	762, 839, 1281, 1322, 1948
GsuI	CTGGAG	2 cut(s)	1197, 1745
HaeIII	GGCC	7 cut(s)	369, 374, 696, 801, 922, 1532, 2070
HapII	CCGG	1 cut(s)	1312
HhaI	GCGC	1 cut(s)	1394
Hin6I	GCGC	1 cut(s)	1392
HinP1I	GCGC	1 cut(s)	1392
HincII	GTYRAC	1 cut(s)	1724
HindII	GTYRAC	1 cut(s)	1724
HindIII	AAGCTT	1 cut(s)	1511
HinfI	GANTC	4 cut(s)	180, 442, 1375, 1445
HpaII	CCGG	1 cut(s)	1312
HphI	GGTGA	4 cut(s)	734, 842, 864, 1738
Hpy166II	GTNNAC	1 cut(s)	1724
Hpy188I	TCNGA	7 cut(s)	141, 358, 588, 1059, 1498, 1964, 2110
Hpy188III	TCNNGA	8 cut(s)	251, 937, 962, 1130, 1139, 1358, 1762, 2063
Hpy8I	GTNNAC	1 cut(s)	1724
HpyAV	CCTTC	5 cut(s)	424, 428, 857, 2011, 2060
HpyCH4III	ACNGT	9 cut(s)	119, 158, 176, 266, 822, 1754, 1804, 2039, 2083
HpyF10VI	GCNNNNNNNGC	6 cut(s)	380, 1010, 1181, 1268, 1895, 1909
HpyF3I	CTNAG	9 cut(s)	20, 357, 408, 498, 984, 1495, 1554, 1920, 2061
HspAI	GCGC	1 cut(s)	1392
KpnI	GGTACC	1 cut(s)	890
KroI	GCCGGC	1 cut(s)	1311
KroNI	GCCGGC	1 cut(s)	1313
Kzo9I	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	8 cut(s)	101, 351, 733, 1239, 1411, 1467, 1684, 1729
Lsp1109I	GCAGC	7 cut(s)	991, 1246, 1283, 1286, 1327, 1748, 1903
LweI	GCATC	6 cut(s)	271, 1000, 1755, 1927, 2101, 2123
MabI	ACCWGGT	1 cut(s)	330
MaeI	CTAG	4 cut(s)	461, 894, 1733, 1781
MaeIII	GTNAC	6 cut(s)	628, 722, 870, 1754, 1838, 2121
MalI	GATC	7 cut(s)	249, 519, 1128, 1137, 1415, 2091, 2107
MboI	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
MfeI	CAATTG	2 cut(s)	270, 1349
MflI	RGATCY	3 cut(s)	1126, 1135, 2105
MhlI	GDGCHC	3 cut(s)	356, 363, 1472
MlsI	TGGCCA	1 cut(s)	369
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	436, 1384
MmeI	TCCRAC	1 cut(s)	2083
Mox20I	TGGCCA	1 cut(s)	369
Mph1103I	ATGCAT	2 cut(s)	583, 2116
MroNI	GCCGGC	1 cut(s)	1311
MroXI	GAANNNNTTC	3 cut(s)	401, 1053, 1665
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	8 cut(s)	300, 741, 1343, 1488, 1515, 1643, 1689, 1704
MslI	CAYNNNNRTG	1 cut(s)	1802
Msp20I	TGGCCA	1 cut(s)	369
MspA1I	CMGCKG	3 cut(s)	1277, 1318, 1835
MspCI	CTTAAG	2 cut(s)	1514, 1688
MspI	CCGG	1 cut(s)	1312
MspR9I	CCNGG	5 cut(s)	332, 371, 1215, 1502, 1849
MunI	CAATTG	2 cut(s)	270, 1349
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	5 cut(s)	332, 371, 1215, 1502, 1849
MvnI	CGCG	1 cut(s)	1392
MwoI	GCNNNNNNNGC	6 cut(s)	380, 1010, 1181, 1268, 1895, 1909
NaeI	GCCGGC	1 cut(s)	1313
NdeI	CATATG	2 cut(s)	778, 1993
NdeII	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
NgoMIV	GCCGGC	1 cut(s)	1311
NheI	GCTAGC	1 cut(s)	1732
NlaIV	GGNNCC	4 cut(s)	191, 888, 1241, 1469
NmuCI	GTSAC	2 cut(s)	722, 870
NsiI	ATGCAT	2 cut(s)	583, 2116
NspI	RCATGY	1 cut(s)	1271
PagI	TCATGA	1 cut(s)	936
PaqCI	CACCTGC	1 cut(s)	818
PciSI	GCTCTTC	1 cut(s)	552
PctI	GAATGC	1 cut(s)	760
PdiI	GCCGGC	1 cut(s)	1313
PdmI	GAANNNNTTC	3 cut(s)	401, 1053, 1665
PfeI	GAWTC	2 cut(s)	180, 1445
PkrI	GCNGC	7 cut(s)	1006, 1261, 1273, 1276, 1317, 1738, 1918
PleI	GAGTC	2 cut(s)	436, 1383
PpsI	GAGTC	2 cut(s)	436, 1383
PpuMI	RGGWCCY	1 cut(s)	189
PshBI	ATTAAT	1 cut(s)	1643
Psp124BI	GAGCTC	2 cut(s)	356, 363
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	5 cut(s)	330, 369, 1213, 1500, 1847
PspFI	CCCAGC	5 cut(s)	758, 835, 1277, 1318, 1944
PspGI	CCWGG	5 cut(s)	330, 369, 1213, 1500, 1847
PspN4I	GGNNCC	4 cut(s)	191, 888, 1241, 1469
PspPI	GGNCC	3 cut(s)	189, 694, 921
PspPPI	RGGWCCY	1 cut(s)	189
PstI	CTGCAG	3 cut(s)	1009, 1078, 1914
PstNI	CAGNNNCTG	3 cut(s)	1013, 1277, 1409
PsuI	RGATCY	3 cut(s)	1126, 1135, 2105
PvuII	CAGCTG	3 cut(s)	1277, 1318, 1835
RsaI	GTAC	4 cut(s)	326, 888, 2036, 2080
RsaNI	GTAC	4 cut(s)	325, 887, 2035, 2079
RseI	CAYNNNNRTG	1 cut(s)	1802
SacI	GAGCTC	2 cut(s)	356, 363
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	8 cut(s)	300, 741, 1343, 1488, 1515, 1643, 1689, 1704
SatI	GCNGC	7 cut(s)	1005, 1260, 1272, 1275, 1316, 1737, 1917
Sau3AI	GATC	7 cut(s)	247, 517, 1126, 1135, 1413, 2089, 2105
Sau96I	GGNCC	3 cut(s)	189, 694, 921
SbfI	CCTGCAGG	1 cut(s)	1914
SchI	GAGTC	2 cut(s)	436, 1384
ScrFI	CCNGG	5 cut(s)	332, 371, 1215, 1502, 1849
SdaI	CCTGCAGG	1 cut(s)	1914
SduI	GDGCHC	3 cut(s)	356, 363, 1472
SexAI	ACCWGGT	1 cut(s)	330
SfaNI	GCATC	6 cut(s)	271, 1000, 1755, 1927, 2101, 2123
SfcI	CTRYAG	7 cut(s)	389, 783, 1005, 1074, 1539, 1910, 2038
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	1802
SmlI	CTYRAG	3 cut(s)	1514, 1688, 1774
SmoI	CTYRAG	3 cut(s)	1514, 1688, 1774
Sse8387I	CCTGCAGG	1 cut(s)	1914
SsiI	CCGC	1 cut(s)	1520
SspI	AATATT	1 cut(s)	948
SspMI	CTAG	4 cut(s)	461, 894, 1733, 1781
SstI	GAGCTC	2 cut(s)	356, 363
StyD4I	CCNGG	5 cut(s)	330, 369, 1213, 1500, 1847
StyI	CCWWGG	1 cut(s)	1419
TaaI	ACNGT	9 cut(s)	119, 158, 176, 266, 822, 1754, 1804, 2039, 2083
TaqI	TCGA	2 cut(s)	250, 1400
TatI	WGTACW	1 cut(s)	2078
TfiI	GAWTC	2 cut(s)	180, 1445
Tru1I	TTAA	8 cut(s)	300, 741, 1343, 1488, 1515, 1643, 1689, 1704
Tru9I	TTAA	8 cut(s)	300, 741, 1343, 1488, 1515, 1643, 1689, 1704
TscAI	CASTG	4 cut(s)	181, 527, 1083, 1757
TseFI	GTSAC	2 cut(s)	722, 870
TseI	GCWGC	7 cut(s)	1004, 1259, 1271, 1274, 1315, 1736, 1916
Tsp45I	GTSAC	2 cut(s)	722, 870
TspDTI	ATGAA	7 cut(s)	50, 115, 410, 1125, 1644, 1893, 1946
TspGWI	ACGGA	2 cut(s)	1183, 2124
TspRI	CASTG	4 cut(s)	181, 527, 1083, 1757
Vha464I	CTTAAG	2 cut(s)	1514, 1688
VpaK11BI	GGWCC	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	1643
XagI	CCTNNNNNAGG	1 cut(s)	928
XapI	RAATTY	5 cut(s)	598, 1233, 1282, 1490, 1547
XceI	RCATGY	1 cut(s)	1271
XcmI	CCANNNNNNNNNTGG	2 cut(s)	241, 1855
XmnI	GAANNNNTTC	3 cut(s)	401, 1053, 1665
XspI	CTAG	4 cut(s)	461, 894, 1733, 1781
Zsp2I	ATGCAT	2 cut(s)	583, 2116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.