Rh5CG098400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000764
Physical Location & Seq
Reverse (-)
7822972 .. 7830804
7833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG098400.1

Sequence Viewer

Length: 363 bp
ATGCAGACTATCCAAGGAGAGGAAAACTCCATAGGATCACAAAAACACGAGAAAGGGTCGCCTTATAACCAAGTTGCAAGTCCATTCATCCAATCAAAAGTACCAGAGGCCGAACAACGACCCGAGCTCGAGAGTCTTGAACAAGTTGCTCTTAGGCTCGGCGGTCTCGTCAGAGCTCTCGGCAGTAGCAGCGACCTCGAAACTGCTCCAATCGACGGCAGGAGAAGTCCAGGGCCTGAGCTTGAAATCGGAGGAGGAGAGGGACTAGGATCGGTGGGAAAGAGCGGCGGAGAGGGCGTCATTGGTAAGGAGGTGAGAGCGGTGTCAGGCTTGAGCGAGGCGGAGACACGTGTGTGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.52

Weight (kDa)

4.83

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccBSI CCGCTC 2 cut(s) 285, 320
AciI CCGC 5 cut(s) 162, 285, 288, 320, 341
AclWI GGATC 2 cut(s) 43, 277
AcvI CACGTG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 19, 215
AflIII ACRYGT 2 cut(s) 347, 349
AgsI TTSAA 2 cut(s) 140, 245
AjnI CCWGG 1 cut(s) 229
AleI CACNNNNGTG 1 cut(s) 352
AluBI AGCT 3 cut(s) 127, 176, 241
AluI AGCT 3 cut(s) 127, 176, 241
Alw21I GWGCWC 2 cut(s) 129, 178
Alw26I GTCTC 2 cut(s) 170, 338
AlwI GGATC 2 cut(s) 43, 277
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 2 cut(s) 122, 128
AoxI GGCC 2 cut(s) 108, 233
ApeKI GCWGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 2 cut(s) 122, 128
BanII GRGCYC 2 cut(s) 129, 178
BauI CACGAG 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 129, 178
BbvI GCAGC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 170, 338
BfaI CTAG 1 cut(s) 266
BisI GCNGC 2 cut(s) 190, 286
BlsI GCNGC 2 cut(s) 191, 287
Bme1390I CCNGG 1 cut(s) 231
BmeT110I CYCGRG 2 cut(s) 122, 128
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 231
BplI GAGNNNNNCTC 2 cut(s) 11, 43
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 13, 230
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 215
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 13, 230
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 19, 215
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 2 cut(s) 267, 270
BseXI GCAGC 1 cut(s) 201
BshFI GGCC 2 cut(s) 110, 235
BsiHKAI GWGCWC 2 cut(s) 129, 178
BsiHKCI CYCGRG 2 cut(s) 122, 128
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 19, 215
BsmAI GTCTC 2 cut(s) 170, 338
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 2 cut(s) 110, 235
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 2 cut(s) 122, 128
Bsp1286I GDGCHC 2 cut(s) 129, 178
Bsp143I GATC 2 cut(s) 35, 269
BspACI CCGC 5 cut(s) 162, 285, 288, 320, 341
BspANI GGCC 2 cut(s) 110, 235
BspCNI CTCAG 1 cut(s) 229
BspPI GGATC 2 cut(s) 43, 277
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 2 cut(s) 285, 320
BssECI CCNNGG 2 cut(s) 13, 230
BssMI GATC 2 cut(s) 35, 269
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 152, 237
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 2 cut(s) 38, 272
BstMAI GTCTC 2 cut(s) 170, 338
BstMBI GATC 2 cut(s) 35, 269
BstMWI GCNNNNNNNGC 2 cut(s) 189, 294
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 110, 235
BtsCI GGATG 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 101
CviJI RGCY 7 cut(s) 110, 127, 157, 176, 235, 241, 330
CviKI_1 RGCY 7 cut(s) 110, 127, 157, 176, 235, 241, 330
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 2 cut(s) 152, 237
DpnI GATC 2 cut(s) 37, 271
DpnII GATC 2 cut(s) 35, 269
EciI GGCGGA 2 cut(s) 303, 356
Ecl136II GAGCTC 2 cut(s) 127, 176
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 129, 178
Eco31I GGTCTC 1 cut(s) 170
Eco53kI GAGCTC 2 cut(s) 127, 176
Eco72I CACGTG 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 122, 128
EcoICRI GAGCTC 2 cut(s) 127, 176
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 129, 178
ErhI CCWWGG 1 cut(s) 13
FaiI YATR 2 cut(s) 32, 66
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 190, 286
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 129, 178
Fsp4HI GCNGC 2 cut(s) 190, 286
FspBI CTAG 1 cut(s) 266
GluI GCNGC 2 cut(s) 190, 286
HaeIII GGCC 2 cut(s) 110, 235
HgaI GACGC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 297
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 173, 251
Hpy188III TCNNGA 2 cut(s) 130, 137
Hpy99I CGWCG 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 4, 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 294
HpyF3I CTNAG 2 cut(s) 152, 237
HpySE526I ACGT 1 cut(s) 349
Hsp92I GRCGYC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 35, 269
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 117, 205, 216, 243, 249, 312
Lsp1109I GCAGC 1 cut(s) 201
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 349
MalI GATC 2 cut(s) 37, 271
MbiI CCGCTC 2 cut(s) 285, 320
MboI GATC 2 cut(s) 35, 269
MhlI GDGCHC 2 cut(s) 129, 178
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 9 cut(s) 13, 100, 206, 245, 248, 253, 286, 304, 331
MslI CAYNNNNRTG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 189, 294
NdeII GATC 2 cut(s) 35, 269
NmeAIII GCCGAG 2 cut(s) 138, 159
OliI CACNNNNGTG 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PkrI GCNGC 2 cut(s) 191, 287
PleI GAGTC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 350
PmlI CACGTG 1 cut(s) 350
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 350
PsiI TTATAA 1 cut(s) 66
Psp124BI GAGCTC 2 cut(s) 129, 178
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 229
PspPI GGNCC 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 352
SacI GAGCTC 2 cut(s) 129, 178
SatI GCNGC 2 cut(s) 190, 286
Sau3AI GATC 2 cut(s) 35, 269
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 2 cut(s) 129, 178
SetI ASST 6 cut(s) 129, 178, 198, 243, 315, 352
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 352
SmlI CTYRAG 2 cut(s) 128, 331
SmoI CTYRAG 2 cut(s) 128, 331
SsiI CCGC 5 cut(s) 162, 285, 288, 320, 341
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 2 cut(s) 129, 178
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 13
TaiI ACGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 129, 198, 213
TauI GCSGC 1 cut(s) 288
TseI GCWGC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.