Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000764

Physical Location & Seq

Genomic Coordinates Reverse (-)

34246399 .. 34247261

Gene Structure 863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1249800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCCTGTAAGCCAAATCTGGTCACAGAAATCATCTCTTGTTGCTGAACATGCTGCTGCTGGGAATTTCGATATTGCAATGCGTTTGTTGAGCAGGGAGCTGGGTTCATACGTATCTAATGTTAGGGGTCCTGCTGCTCTTGTATTTAAATTCTCAGAGCTAGAAGAGAAGCTTAAGGCGGGTTACAAGGCCACAACCCAAGGGAAATTTGCTGATGCTTTACGTCTTCTCCTTGGTATTCTGTATACTATTCCTCTGATCGTAGTTGATTCAAAGAGAGAGGTTGATGAAGTAAAAGAATTAATTATCATTGTAAAGGAGTATGTGCTGGGTTTGAAGATGGAGATTAAGAGGAAGGAACTTAAAGGCGATCCTGTTTGCCAACAGGAGCTAGCGGCTTACTTCACCCACTGCAACCTTCAGATGCCTCACTTGAGACTTGCATTACTAAATGCCATGAGTGTTTGCTATAAGGCTGGTAATCTCAACACGGCAGCTAACTTTGCCAGGCGACTTTTGGAGACCAACCCCACTGTTGAAAACCATGCAAAGACTGCAAGACAAATCCTGCAAGCTGCCGAAAAGAACATGACTGATGCAACCCAGCTAAACTATGATTTCAGAAACCCATTTGTGGTTTGTGGGGCAACATACGTGTCTATTTACCGTGGACAGAAGGATGTGTCATGCCCGTACTGCAGTTCTCGGTTAGTTCCCGACCAGGAAGGGAAGCTCTGTACTGTTTGTGATCTTTCAGTGGTTGGATCAGATGCGTCTGGTTTGCTCTGTTCTCCTACCCAGATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

270

Amino Acids

29.78

Weight (kDa)

8.66

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COPI_C	PF06957	1 - 35	9.6e-10	Coatomer (COPI) alpha subunit C-terminus
COPI_C	PF06957	43 - 269	3.1e-105	Coatomer (COPI) alpha subunit C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62020 AT2G21390
fragaria_vesca	FvH4_3g10280 FvH4_5g12340 FvH4_5g12340 FvH4_5g12391 FvH4_5g12420
malus_domestica	MD05G1271000.v1.1 MD06G1214600.v1.1 MD10G1248600.v1.1 MD10G1248700.v1.1 MD10G1248800.v1.1 MD10G1249800.v1.1 MD10G1249900.v1.1 MD10G1250100.v1.1 MD10G1250200.v1.1 MD10G1250400.v1.1 MD10G1250600.v1.1 MD10G1250700.v1.1 MD10G1251000.v1.1 MD10G1251300.v1.1 MD10G1251600.v1.1 MD14G1225500.v1.1
prunus_persica	Prupe.4G091800_v2.0.a1 Prupe.4G091800_v2.0.a1 Prupe.5G220000_v2.0.a1 Prupe.5G220000_v2.0.a1
pyrus_communis	pycom05g25340 pycom06g19120 pycom10g20750 pycom14g18670
rosa_chinensis	RchiOBHm_Chr5g0016541 RchiOBHm_Chr7g0185121 RchiOBHm_Chr7g0185201
rosa_laevigata	RLG00000000634 RLG00000000671 RLG00000001958 RLG00000004933 RLG00000032256
rosa_multiflora	Rmu_co8505923.1_g000001 Rmu_co8507327.1_g000001 Rmu_sc0001235.1_g000018 Rmu_sc0004765.1_g000006 Rmu_sc0007192.1_g000011 Rmu_sc0019416.1_g000003 Rmu_ssc0000398.1_g000013
rosa_roxburghii	Rroxscaffold_1G00060340 Rroxscaffold_3G00269160 Rroxscaffold_3G00269190
rosa_rugosa	Rorug05G0032700 Rorug06G0466700 Rorug06G0466700 Rorug06G0466800 Rorug07G0188600
rosa_samantha	Rh4BG061900 Rh4CG068200 Rh4DG290700 Rh5AG127000 Rh5AG459900 Rh5BG125900 Rh5CG098400 Rh5CG138600 Rh5DG126100 Rh7AG076100 Rh7BG071200 Rh7CG072400 Rh7DG071500 Rh7DG071900
rosa_wichuraiana	Rw5G011000 Rw7G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	2 cut(s)	179, 395
AclWI	GGATC	2 cut(s)	365, 772
AcsI	RAATTY	3 cut(s)	64, 149, 206
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	695, 739
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	3 cut(s)	273, 337, 539
AjnI	CCWGG	2 cut(s)	506, 720
AluBI	AGCT	8 cut(s)	100, 160, 172, 391, 497, 575, 607, 733
AluI	AGCT	8 cut(s)	100, 160, 172, 391, 497, 575, 607, 733
Alw26I	GTCTC	2 cut(s)	430, 515
AlwI	GGATC	2 cut(s)	365, 772
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	5 cut(s)	53, 56, 134, 494, 575
ApoI	RAATTY	3 cut(s)	64, 149, 206
AseI	ATTAAT	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	397
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	5 cut(s)	40, 43, 121, 506, 562
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	2 cut(s)	508, 722
BcoDI	GTCTC	2 cut(s)	430, 515
BfaI	CTAG	2 cut(s)	161, 392
BfmI	CTRYAG	1 cut(s)	697
BfrI	CTTAAG	1 cut(s)	173
BisI	GCNGC	6 cut(s)	54, 57, 135, 396, 495, 576
BlsI	GCNGC	6 cut(s)	55, 58, 136, 397, 496, 577
Bme1390I	CCNGG	2 cut(s)	508, 722
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	508, 722
BmsI	GCATC	4 cut(s)	205, 414, 586, 760
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	454
BsaAI	YACGTR	2 cut(s)	112, 655
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	199, 232, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	508, 722
BseDI	CCNNGG	3 cut(s)	199, 232, 667
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	168
BseXI	GCAGC	5 cut(s)	40, 43, 121, 506, 562
BseYI	CCCAGC	4 cut(s)	59, 100, 328, 603
BshFI	GGCC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	2 cut(s)	430, 515
BsnI	GGCC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	515
Bsp143I	GATC	4 cut(s)	258, 370, 748, 764
BspACI	CCGC	2 cut(s)	179, 395
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	701
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	365, 772
BspTI	CTTAAG	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	199, 232, 667
BssMI	GATC	4 cut(s)	258, 370, 748, 764
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	199, 232
Bst1107I	GTATAC	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	508, 722
Bst4CI	ACNGT	3 cut(s)	535, 668, 742
Bst6I	CTCTTC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBAI	YACGTR	2 cut(s)	112, 655
BstC8I	GCNNGC	2 cut(s)	393, 573
BstDEI	CTNAG	1 cut(s)	154
BstDSI	CCRYGG	1 cut(s)	667
BstF5I	GGATG	1 cut(s)	685
BstKTI	GATC	4 cut(s)	261, 373, 751, 767
BstMAI	GTCTC	2 cut(s)	430, 515
BstMBI	GATC	4 cut(s)	258, 370, 748, 764
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 503, 554, 696
BstNI	CCWGG	2 cut(s)	508, 722
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	506, 720
BstSFI	CTRYAG	1 cut(s)	697
BstSNI	TACGTA	1 cut(s)	112
BstV1I	GCAGC	5 cut(s)	40, 43, 121, 506, 562
BstV2I	GAAGAC	1 cut(s)	218
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	3 cut(s)	409, 531, 762
Cac8I	GCNNGC	2 cut(s)	393, 573
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	762
Csp6I	GTAC	2 cut(s)	694, 738
CviAII	CATG	5 cut(s)	50, 457, 545, 589, 687
CviQI	GTAC	2 cut(s)	694, 738
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	4 cut(s)	260, 372, 750, 766
DpnII	GATC	4 cut(s)	258, 370, 748, 764
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco105I	TACGTA	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	199, 232
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	506, 720
EcoT14I	CCWWGG	2 cut(s)	199, 232
ErhI	CCWWGG	2 cut(s)	199, 232
FaeI	CATG	5 cut(s)	53, 460, 548, 592, 690
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	5 cut(s)	49, 456, 544, 588, 686
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	6 cut(s)	54, 57, 135, 396, 495, 576
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	6 cut(s)	54, 57, 135, 396, 495, 576
FspBI	CTAG	2 cut(s)	161, 392
GluI	GCNGC	6 cut(s)	54, 57, 135, 396, 495, 576
GsaI	CCCAGC	4 cut(s)	63, 104, 332, 607
HaeIII	GGCC	1 cut(s)	191
HgaI	GACGC	1 cut(s)	762
Hin1II	CATG	5 cut(s)	53, 460, 548, 592, 690
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	2 cut(s)	246, 671
Hpy188I	TCNGA	5 cut(s)	157, 258, 423, 623, 769
Hpy188III	TCNNGA	1 cut(s)	716
Hpy8I	GTNNAC	2 cut(s)	246, 671
HpyAV	CCTTC	4 cut(s)	349, 428, 670, 719
HpyCH4III	ACNGT	3 cut(s)	535, 668, 742
HpyCH4IV	ACGT	3 cut(s)	111, 223, 654
HpyCH4V	TGCA	8 cut(s)	77, 414, 443, 548, 557, 571, 599, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 503, 554, 696
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	3 cut(s)	111, 223, 654
Hsp92II	CATG	5 cut(s)	53, 460, 548, 592, 690
Kzo9I	GATC	4 cut(s)	258, 370, 748, 764
LmnI	GCTCC	2 cut(s)	97, 388
Lsp1109I	GCAGC	5 cut(s)	40, 43, 121, 506, 562
LweI	GCATC	4 cut(s)	205, 414, 586, 760
MaeI	CTAG	2 cut(s)	161, 392
MaeII	ACGT	3 cut(s)	111, 223, 654
MaeIII	GTNAC	2 cut(s)	21, 182
MalI	GATC	4 cut(s)	260, 372, 750, 766
MboI	GATC	4 cut(s)	258, 370, 748, 764
MboII	GAAGA	3 cut(s)	176, 218, 349
MluCI	AATT	5 cut(s)	64, 149, 206, 299, 303
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	4 cut(s)	264, 274, 345, 438
MseI	TTAA	5 cut(s)	147, 174, 302, 348, 363
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	508, 722
MvaI	CCWGG	2 cut(s)	508, 722
MwoI	GCNNNNNNNGC	4 cut(s)	50, 503, 554, 696
NdeII	GATC	4 cut(s)	258, 370, 748, 764
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	5 cut(s)	53, 460, 548, 592, 690
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	6 cut(s)	55, 58, 136, 397, 496, 577
Ppu21I	YACGTR	2 cut(s)	112, 655
PpuMI	RGGWCCY	1 cut(s)	128
PshBI	ATTAAT	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	506, 720
PspFI	CCCAGC	4 cut(s)	59, 100, 328, 603
PspGI	CCWGG	2 cut(s)	506, 720
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	701
RsaI	GTAC	2 cut(s)	695, 739
RsaNI	GTAC	2 cut(s)	694, 738
SaqAI	TTAA	5 cut(s)	147, 174, 302, 348, 363
SatI	GCNGC	6 cut(s)	54, 57, 135, 396, 495, 576
Sau3AI	GATC	4 cut(s)	258, 370, 748, 764
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	508, 722
SfaNI	GCATC	4 cut(s)	205, 414, 586, 760
SfcI	CTRYAG	1 cut(s)	697
SinI	GGWCC	1 cut(s)	128
SmiI	ATTTAAAT	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	173, 433
SmoI	CTYRAG	2 cut(s)	173, 433
SnaBI	TACGTA	1 cut(s)	112
Sse9I	AATT	5 cut(s)	64, 149, 206, 299, 303
SsiI	CCGC	2 cut(s)	179, 395
SspMI	CTAG	2 cut(s)	161, 392
StyD4I	CCNGG	2 cut(s)	506, 720
StyI	CCWWGG	2 cut(s)	199, 232
SwaI	ATTTAAAT	1 cut(s)	148
TaaI	ACNGT	3 cut(s)	535, 668, 742
TaiI	ACGT	3 cut(s)	114, 226, 657
TaqI	TCGA	1 cut(s)	69
TasI	AATT	5 cut(s)	64, 149, 206, 299, 303
TatI	WGTACW	1 cut(s)	737
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	5 cut(s)	147, 174, 302, 348, 363
Tru9I	TTAA	5 cut(s)	147, 174, 302, 348, 363
TscAI	CASTG	3 cut(s)	416, 538, 762
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	5 cut(s)	53, 56, 134, 494, 575
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	96, 303
TspRI	CASTG	3 cut(s)	416, 538, 762
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	128
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	3 cut(s)	64, 149, 206
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	2 cut(s)	161, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.