Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Reverse (-)

24052362 .. 24053923

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCGGCAGAACCGAAGGCAGCGACTGCTGAAGTAGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAATTTGAAATTAACGAAGATTGGTTGGAGAAAGAAGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGATGACTGGGATGATGATGATGTCAATGACGACTTCTCACGTCAGTTAAGGAAGGAGCTTGAGAATGGTACTGACAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko03440 ko05169 map03050 map03440 map05169

Pfam Domains

Protein Families

DSS1_SEM1

Protein Analysis

74

Amino Acids

8.86

Weight (kDa)

4.05

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSS1_SEM1	PF05160	68 - 110	2.7e-12	DSS1/SEM1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	83
AjiI	CACGTC	1 cut(s)	182
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
AlwI	GGATC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	6, 21
BlsI	GCNGC	2 cut(s)	7, 22
BmgBI	CACGTC	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	210
CviJI	RGCY	2 cut(s)	129, 199
CviKI_1	RGCY	2 cut(s)	129, 199
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	6, 21
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	6, 21
GluI	GCNGC	2 cut(s)	6, 21
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	10, 112, 187
HpyCH4IV	ACGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	2 cut(s)	133, 143
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	1 cut(s)	181
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	104, 122, 152
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	2 cut(s)	77, 84
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	49, 67
MseI	TTAA	2 cut(s)	87, 188
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	7, 22
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	87, 188
SatI	GCNGC	2 cut(s)	6, 21
Sau3AI	GATC	1 cut(s)	46
SetI	ASST	2 cut(s)	184, 201
SgeI	CNNG	5 cut(s)	85, 142, 160, 192, 212
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	77, 84
SsiI	CCGC	1 cut(s)	5
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	77, 84
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	87, 188
Tru9I	TTAA	2 cut(s)	87, 188
TscAI	CASTG	1 cut(s)	140
TseI	GCWGC	1 cut(s)	20
TspRI	CASTG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.