Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Reverse (-)

27578085 .. 27579426

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1183200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCGGCGGAGCCCCAGGCGGTGACGGAGGTCGCGAAGATGGATCTATTCGAAGACGACGACGAGTTCGAAGAGTTTGATATCAACGAAGAATGGGAGGACAAAGAGGAAGGCAAGGAAGTGACACAGCAGTGGGAAGACGACTGGGATGATGATGATGTTAACGATGACTTCTCTCTGCAGCTGAGGAGGGAACTTGAGAACAATACTGAGAAGAGCTCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko03440 ko05169 map03050 map03440 map05169

Pfam Domains

Protein Families

DSS1_SEM1

Protein Analysis

76

Amino Acids

8.94

Weight (kDa)

4.05

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSS1_SEM1	PF05160	11 - 68	6.1e-18	DSS1/SEM1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	5, 8, 20
AclWI	GGATC	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	15
AleI	CACNNNNGTG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	184, 219, 224
AluI	AGCT	3 cut(s)	184, 219, 224
Alw21I	GWGCWC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsuHPI	GGTGA	1 cut(s)	34
AsuII	TTCGAA	2 cut(s)	51, 69
BanII	GRGCYC	2 cut(s)	15, 221
BbsI	GAAGAC	2 cut(s)	60, 144
Bbv12I	GWGCWC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	179
BisI	GCNGC	2 cut(s)	6, 182
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	2 cut(s)	7, 183
Bme1390I	CCNGG	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	29
BpiI	GAAGAC	2 cut(s)	60, 144
BplI	GAGNNNNNCTC	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	220
Bpu14I	TTCGAA	2 cut(s)	51, 69
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	176, 201
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	221
Bsp119I	TTCGAA	2 cut(s)	51, 69
Bsp1286I	GDGCHC	2 cut(s)	15, 221
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	220
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	3 cut(s)	5, 8, 20
BspCNI	CTCAG	2 cut(s)	177, 202
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	209
BspT104I	TTCGAA	2 cut(s)	51, 69
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	66, 209
BstBI	TTCGAA	2 cut(s)	51, 69
BstDEI	CTNAG	4 cut(s)	185, 210, 220, 225
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	17
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	2 cut(s)	60, 144
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
BtuMI	TCGCGA	1 cut(s)	35
CviJI	RGCY	4 cut(s)	13, 184, 219, 224
CviKI_1	RGCY	4 cut(s)	13, 184, 219, 224
DdeI	CTNAG	4 cut(s)	185, 210, 220, 225
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	66, 209
EarI	CTCTTC	2 cut(s)	66, 209
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	2 cut(s)	15, 221
Eco32I	GATATC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	15, 221
Fnu4HI	GCNGC	2 cut(s)	6, 182
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	2 cut(s)	15, 221
Fsp4HI	GCNGC	2 cut(s)	6, 182
GluI	GCNGC	2 cut(s)	6, 182
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HpaI	GTTAAC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	4 cut(s)	185, 210, 220, 225
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	2, 29, 130
Lsp1109I	GCAGC	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	22, 121
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	6 cut(s)	49, 65, 83, 101, 149, 226
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	15, 221
MnlI	CCTC	5 cut(s)	22, 91, 100, 180, 183
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	35
NdeII	GATC	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	22, 121
NruI	TCGCGA	1 cut(s)	35
NspV	TTCGAA	2 cut(s)	51, 69
OliI	CACNNNNGTG	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 57, 66
PkrI	GCNGC	2 cut(s)	7, 183
PshAI	GACNNNNGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	184
RruI	TCGCGA	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	6, 182
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	15, 221
SetI	ASST	4 cut(s)	33, 186, 221, 226
SfcI	CTRYAG	1 cut(s)	179
SfuI	TTCGAA	2 cut(s)	51, 69
SgeI	CNNG	7 cut(s)	28, 29, 46, 76, 127, 157, 209
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	3 cut(s)	5, 8, 20
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	15
TaqI	TCGA	2 cut(s)	51, 69
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	22, 121
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	2 cut(s)	22, 121
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.