AT5G45010

proteasome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000819
Physical Location & Seq
Reverse (-)
18166898 .. 18168383
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45010.1

Sequence Viewer

Length: 222 bp
ATGGCGGCAGAACCCAAGGCAGCTGTCGAAGTGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAGATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGATGACTGGGATGATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGAGAATGCTAGTGAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0000724 GO:0000725 GO:0002119 GO:0002164 GO:0003006 GO:0003008 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006887 GO:0006913 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007586 GO:0008104 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009792 GO:0009888 GO:0009893 GO:0009987 GO:0010467 GO:0010498 GO:0010604 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016578 GO:0016579 GO:0019222 GO:0019538 GO:0019941 GO:0019953 GO:0022412 GO:0022414 GO:0022600 GO:0022607 GO:0022624 GO:0030154 GO:0030163 GO:0030447 GO:0031323 GO:0031325 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031503 GO:0031597 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032940 GO:0032991 GO:0033036 GO:0033554 GO:0034515 GO:0034613 GO:0034622 GO:0034629 GO:0034641 GO:0035753 GO:0036211 GO:0040007 GO:0040008 GO:0040014 GO:0040018 GO:0040025 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043412 GO:0043570 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0044703 GO:0045184 GO:0045927 GO:0046483 GO:0046903 GO:0046907 GO:0048468 GO:0048477 GO:0048513 GO:0048518 GO:0048522 GO:0048569 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0050892 GO:0050896 GO:0051028 GO:0051094 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051276 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0060429 GO:0065003 GO:0065007 GO:0070646 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072742 GO:0080090 GO:0090304 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

73

Amino Acids

8.7

Weight (kDa)

4.05

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSS1_SEM1 PF05160 11 - 68 4.7e-18 DSS1/SEM1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 178
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 80
AluBI AGCT 2 cut(s) 23, 196
AluI AGCT 2 cut(s) 23, 196
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsuHPI GGTGA 1 cut(s) 46
BbvI GCAGC 1 cut(s) 32
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 6, 21
BlsI GCNGC 2 cut(s) 7, 22
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 133
BsmI GAATGC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 128
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 178
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 137, 169
Cac8I GCNNGC 1 cut(s) 128
CseI GACGC 1 cut(s) 167
CviJI RGCY 3 cut(s) 23, 126, 196
CviKI_1 RGCY 3 cut(s) 23, 126, 196
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 6, 21
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 6, 21
FspBI CTAG 1 cut(s) 207
GluI GCNGC 2 cut(s) 6, 21
HgaI GACGC 1 cut(s) 167
HphI GGTGA 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 31, 109, 184
HpyCH4V TGCA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 130, 140
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 2 cut(s) 101, 149
MflI RGATCY 1 cut(s) 43
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 46, 64, 100
MseI TTAA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 208
MvnI CGCG 1 cut(s) 178
NdeII GATC 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 66
PctI GAATGC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 7, 22
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 6, 21
Sau3AI GATC 1 cut(s) 43
SetI ASST 3 cut(s) 25, 42, 198
SfcI CTRYAG 1 cut(s) 128
SgeI CNNG 8 cut(s) 28, 64, 82, 139, 157, 187, 189, 209
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 74
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 15
TaqI TCGA 3 cut(s) 27, 51, 69
TasI AATT 1 cut(s) 74
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 2 cut(s) 137, 169
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 2 cut(s) 137, 169
XapI RAATTY 1 cut(s) 74
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.