Rh7CG320000

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
34432572 .. 34435548
2977 bp
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UTR
Exon/CDS
Intron
Rh7CG320000.1

Sequence Viewer

Length: 327 bp
ATGAGTTTTTTTTTGTCAGAGGTAGAGAGCTATAGCTATATTGATGATGTTGTCGAAGCCTATTTGGAGAGAATTGTCTTCCACTGTCGAGATTTTTCACAATTTTTTTTTTCTATTAAGAAACTCACCATTATTCTGATAAATGCTTGGTGCTACTATGAGAATCATATTCTTGGTGCCCATTATGGTTTAATTTCAACATATGCTTTGGAAACATTAGTCCTATATATATTCCATGTTTTTCATTCTTATCCAAATGGCCCTTTAACAGTGAGTACTTACAGAATCAGTTATGAGTTTTCTATTTTCAAATCATACAGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.89

Weight (kDa)

5.88

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 41 - 103 7e-24 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AfaI GTAC 1 cut(s) 277
AgsI TTSAA 2 cut(s) 198, 310
AluBI AGCT 3 cut(s) 30, 36, 324
AluI AGCT 3 cut(s) 30, 36, 324
AoxI GGCC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 70
BfmI CTRYAG 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 181
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 176
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 181
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 86, 271
BstSFI CTRYAG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 82, 276
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 236
CviJI RGCY 5 cut(s) 30, 36, 59, 261, 324
CviKI_1 RGCY 5 cut(s) 30, 36, 59, 261, 324
CviQI GTAC 1 cut(s) 276
FaeI CATG 1 cut(s) 239
FatI CATG 1 cut(s) 235
FauNDI CATATG 1 cut(s) 202
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 1 cut(s) 239
HinfI GANTC 2 cut(s) 163, 285
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 19, 138
Hpy188III TCNNGA 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 86, 271
Hsp92II CATG 1 cut(s) 239
MboII GAAGA 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 3 cut(s) 72, 101, 192
MnlI CCTC 1 cut(s) 13
MseI TTAA 3 cut(s) 117, 191, 266
NdeI CATATG 1 cut(s) 202
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 163, 285
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 117, 191, 266
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 277
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 24, 32, 38, 326
SfcI CTRYAG 1 cut(s) 31
SgeI CNNG 4 cut(s) 101, 159, 185, 248
Sse9I AATT 3 cut(s) 72, 101, 192
TaaI ACNGT 2 cut(s) 86, 271
TaqI TCGA 2 cut(s) 54, 88
TasI AATT 3 cut(s) 72, 101, 192
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 2 cut(s) 163, 285
Tru1I TTAA 3 cut(s) 117, 191, 266
Tru9I TTAA 3 cut(s) 117, 191, 266
TscAI CASTG 2 cut(s) 89, 276
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 2 cut(s) 89, 276
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.