Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Forward (+)

15035142 .. 15039616

Gene Structure 4475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG172400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTTCTTTGGGTCTTCTTATGGCTTCACTGGCACATGGAAGGAAGCTCTTGAATGGGCTTGTTATTTCGCTTTTGCTTCCATGTTTGATATTCTCTCAACTCAGACAAGCAATCATTGGGGAGAAAATTCTCGAGTGTCCTCCACTTTATTGAATAGCATTGTTCCAATGGAGAAGGATCAGAAGGTAGCACCTAAAGACCCCAAGGTGGATATGTTCGAGGACGATGACGAGTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko03440 ko05169 map03050 map03440 map05169

Pfam Domains

Protein Families

DSS1_SEM1

Protein Analysis

80

Amino Acids

9.19

Weight (kDa)

4.34

Isoelectric Point (pI)

15.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	53, 154, 239
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	27
CviAII	CATG	2 cut(s)	36, 82
CviJI	RGCY	3 cut(s)	24, 47, 59
CviKI_1	RGCY	3 cut(s)	24, 47, 59
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	39, 85
FaiI	YATR	4 cut(s)	21, 37, 83, 215
FatI	CATG	2 cut(s)	35, 81
Hin1II	CATG	2 cut(s)	39, 85
Hpy188I	TCNGA	2 cut(s)	105, 183
Hpy188III	TCNNGA	2 cut(s)	50, 132
HpyAV	CCTTC	3 cut(s)	34, 169, 178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	39, 85
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	1 cut(s)	15
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	6
MluCI	AATT	1 cut(s)	127
MnlI	CCTC	2 cut(s)	151, 214
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	39, 85
PaeR7I	CTCGAG	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	178
SetI	ASST	4 cut(s)	49, 189, 196, 210
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	204
TaqI	TCGA	2 cut(s)	133, 219
TasI	AATT	1 cut(s)	127
TscAI	CASTG	1 cut(s)	34
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.