Rw5G001030

proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000819
Physical Location & Seq
Reverse (-)
893941 .. 894167
227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001030.1

Sequence Viewer

Length: 180 bp
ATGGCGGCGACGGAGCCCAAGGCAGTGACTGAGGTCGCCAAGATGGACCTGTTCGAAGACGATGACGAGTTCGAAGAGTTTGAAATCAATGAAGAATGGGAGGACAAAGAGGAAGTTAATGATGACTTCTCTCTGCAGCTGGGGAGGGAACTGGAAAACAACACTGAGAAGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

59

Amino Acids

6.99

Weight (kDa)

4.05

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 46
AsuII TTCGAA 2 cut(s) 54, 72
AvaII GGWCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 2 cut(s) 6, 137
BlsI GCNGC 2 cut(s) 7, 138
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 15
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 2 cut(s) 54, 72
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 21, 156
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 148
BseYI CCCAGC 1 cut(s) 139
Bsp119I TTCGAA 2 cut(s) 54, 72
Bsp1286I GDGCHC 1 cut(s) 18
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 22, 157
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 138
BspT104I TTCGAA 2 cut(s) 54, 72
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 69
BstBI TTCGAA 2 cut(s) 54, 72
BstDEI CTNAG 2 cut(s) 30, 165
BstPAI GACNNNNGTC 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 162
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 46
CviJI RGCY 2 cut(s) 16, 139
CviKI_1 RGCY 2 cut(s) 16, 139
DdeI CTNAG 2 cut(s) 30, 165
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 6, 137
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 6, 137
GluI GCNGC 2 cut(s) 6, 137
GsaI CCCAGC 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 2 cut(s) 30, 165
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 62, 125, 137
Lsp1109I GCAGC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 25
MboII GAAGA 3 cut(s) 68, 86, 104
MhlI GDGCHC 1 cut(s) 18
MnlI CCTC 4 cut(s) 25, 94, 103, 138
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 25
NspV TTCGAA 2 cut(s) 54, 72
PkrI GCNGC 2 cut(s) 7, 138
PshAI GACNNNNGTC 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 6, 137
Sau96I GGNCC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 18
SetI ASST 3 cut(s) 36, 51, 141
SfcI CTRYAG 1 cut(s) 134
SfuI TTCGAA 2 cut(s) 54, 72
SgeI CNNG 6 cut(s) 31, 52, 61, 79, 152, 164
SinI GGWCC 1 cut(s) 46
SsiI CCGC 1 cut(s) 5
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 2 cut(s) 54, 72
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 30, 169
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 30, 169
VpaK11BI GGWCC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.