pycom06g15710

26S proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000819
Physical Location & Seq
Reverse (-)
20228418 .. 20229210
793 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15710.2

Sequence Viewer

Length: 189 bp
ATGGATCTGTTCGAAGACGACGACGAGTTCGAGGAGTTTGATATCAACCAAGAATGGGAGGACAAAGAGGAAGGCAAGGAAGTGACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTTAACGATGACTTCTCCCTGCAGCTGAGGAGGGAAGTTGAGAACAATACTGAGAAGAGCTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

63

Amino Acids

7.59

Weight (kDa)

4.05

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 91
AluBI AGCT 3 cut(s) 145, 180, 185
AluI AGCT 3 cut(s) 145, 180, 185
Alw21I GWGCWC 1 cut(s) 182
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 142
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AsuII TTCGAA 1 cut(s) 12
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 21, 105
Bbv12I GWGCWC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 143
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 115
BpiI GAAGAC 2 cut(s) 21, 105
BplI GAGNNNNNCTC 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 146
Bpu1102I GCTNAGC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 137, 162
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 47, 163
BseXI GCAGC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 55
Bsp119I TTCGAA 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 4
Bsp1720I GCTNAGC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 138, 163
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 12
BsrI ACTGG 1 cut(s) 110
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 12
BstDEI CTNAG 4 cut(s) 146, 171, 181, 186
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 2 cut(s) 21, 105
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 98
CviJI RGCY 3 cut(s) 145, 180, 185
CviKI_1 RGCY 3 cut(s) 145, 180, 185
DdeI CTNAG 4 cut(s) 146, 171, 181, 186
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 180
EcoRV GATATC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 143
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaI GTTAAC 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 2 cut(s) 23, 26
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 142
HpyF3I CTNAG 4 cut(s) 146, 171, 181, 186
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 2 cut(s) 91, 152
Lsp1109I GCAGC 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 3 cut(s) 26, 110, 187
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 182
MnlI CCTC 5 cut(s) 25, 52, 61, 141, 144
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 145
NdeII GATC 1 cut(s) 4
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 27, 123
PkrI GCNGC 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 91
SacI GAGCTC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 182
SetI ASST 3 cut(s) 147, 182, 187
SfcI CTRYAG 1 cut(s) 140
SfuI TTCGAA 1 cut(s) 12
SgeI CNNG 6 cut(s) 37, 43, 62, 88, 118, 151
SmiMI CAYNNNNRTG 1 cut(s) 91
SstI GAGCTC 1 cut(s) 182
TaqI TCGA 2 cut(s) 12, 30
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 82
TspRI CASTG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.