Rorug05G0208100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000819
Physical Location & Seq
Forward (+)
20751837 .. 20753254
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0208100.1

Sequence Viewer

Length: 1239 bp
ATGGCTTCCGCTTATCATCATAAGCCTCATGCTGTTTGTATTCCAATTCCAGCTCAAAGCCACATAAAGGCTATGCTTAAATTCACCAAAATCCTCCACCACAGAGGCTTTCACATCACCTTTGTCAACACAGAATTCAACCACAAGCGATTTCTTAAGTCTCGAGGACTCAAATCCCTCAATGGCTTACCTGATTTTTATTTTGAAGCCATCCCTGATGGCATTCCAGAATCAGGTGAAGATGCCACCCAAAATGGCACTTTGATTCTTGACTCCGTCAGAAATCATCTCTTGGCTCCATTTCGTGACCTCCTGATAAAACTCAACAGTACTAGTCCTCCAGTGGCTAGCATTGTTTCAGATGGTTTCATGTCCGCTTTTACTATAACAGCGGCAGAAGAACTTGGAATCCCTATTGCATTGTTCTACACTATTTCTGCTTGCAGCTTCATGGGATTCAGGAAATTCCGTACTTTGCTTGAGAAAGGGCTTGCACCACTTAAAGATCCAGATGACATCCGCTTCAACACCACCATGGAAGCAGTCGAAAACGCAAATAAAGCTTCAGCTGTTGTTCTTCTCACATTTGATGCTTTGGAGAAAGAGGTTTTGGAAGCTCTCTCCTCATCTATTTCTCCACCTGTTTATACAATTGGTCCTCTCCAATTGCTTCTAAATCAAATACCGGAAGACCCTTTGAAGCCTATGGGATACAGTCTTTGGAAGGAGGAAACAGACTGTCTCCAATGGCTAAACTGCAAAGCACCGAACTCAATTGTTTATGTCAATTTTGGAAGTATCGCGGTTTTGACACCGGAACAGCTTCTCGAGTTTGGTTGGGGACTTGCAAATACCAAGCTCCCCTTCTTCTGGGTTATTAGGCCTGATTTGGTTGCTGGAAAATCGGCAATCTTGCCGCCAGAATTTGAAGCTGAAACCAAAGACAGAGGTCTAATAGCAAGTTGGTGCCCTCAAGAAGAAGTCCTAAACCATCCATCAGTTGGTGGGTTTTTAACACACAGCGGTTGGAATTCAACCATTGAGAGTGTTACCGCTGGAGTGCCGATGCTGTGTTGGCCATTCTCTGCAGACCAGCAAACAAACAGTTACTACAGTTGCAATGAATGGGGAATTGGCATGGAGATCAACACTGATGTCAAGAGAGACGATGTAGAGAAGATTGTCAAAGAATTAATGGAGGAAGACAAGGGTAAGCAGATGAAAAACAGGGACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

412

Amino Acids

45.92

Weight (kDa)

5.44

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 181 - 405 5.3e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 966
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccII CGCG 1 cut(s) 803
AciI CCGC 8 cut(s) 9, 375, 392, 520, 803, 917, 1023, 1053
AclWI GGATC 1 cut(s) 500
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 5 cut(s) 80, 134, 464, 923, 1030
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 2 cut(s) 331, 472
AfiI CCNNNNNNNGG 4 cut(s) 67, 233, 870, 1001
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 6 cut(s) 139, 206, 526, 700, 929, 1035
AhlI ACTAGT 1 cut(s) 332
AjuI GAANNNNNNNTTGG 6 cut(s) 593, 625, 848, 880, 1116, 1148
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 8 cut(s) 53, 447, 563, 569, 617, 823, 859, 932
AluI AGCT 8 cut(s) 53, 447, 563, 569, 617, 823, 859, 932
Alw26I GTCTC 3 cut(s) 165, 746, 1158
AlwI GGATC 1 cut(s) 500
Ama87I CYCGRG 2 cut(s) 162, 827
AoxI GGCC 2 cut(s) 881, 1076
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 5 cut(s) 80, 134, 464, 923, 1030
AseI ATTAAT 1 cut(s) 1193
Asp700I GAANNNNTTC 1 cut(s) 822
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 3 cut(s) 76, 109, 248
AsuNHI GCTAGC 1 cut(s) 347
AvaI CYCGRG 2 cut(s) 162, 827
AvaII GGWCC 1 cut(s) 656
BaeGI GKGCMC 1 cut(s) 971
BalI TGGCCA 1 cut(s) 1078
BanI GGYRCC 1 cut(s) 966
BbsI GAAGAC 2 cut(s) 696, 1209
BbvI GCAGC 1 cut(s) 456
BccI CCATC 5 cut(s) 212, 218, 356, 999, 1003
BciVI GTATCC 1 cut(s) 704
BcoDI GTCTC 3 cut(s) 165, 746, 1158
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 333, 348
BfmI CTRYAG 2 cut(s) 1086, 1111
BfrI CTTAAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 704
BisI GCNGC 3 cut(s) 393, 445, 917
BlsI GCNGC 3 cut(s) 394, 446, 918
BmcAI AGTACT 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 2 cut(s) 162, 827
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 2 cut(s) 297, 968
BmsI GCATC 3 cut(s) 232, 580, 1056
BmtI GCTAGC 1 cut(s) 351
BoxI GACNNNNGTC 1 cut(s) 948
BpiI GAAGAC 2 cut(s) 696, 1209
BpmI CTGGAG 2 cut(s) 324, 1077
BpuEI CTTGAG 2 cut(s) 500, 957
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 2 cut(s) 685, 814
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 233, 870, 1001
Bse1I ACTGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 1126
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 3 cut(s) 210, 516, 991
BseLI CCNNNNNNNGG 4 cut(s) 67, 233, 870, 1001
BseMI GCAATG 1 cut(s) 1126
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 971
BseXI GCAGC 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 803
BshFI GGCC 2 cut(s) 883, 1078
BshNI GGYRCC 1 cut(s) 966
BsiHKCI CYCGRG 2 cut(s) 162, 827
BsiSI CCGG 2 cut(s) 686, 815
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 4 cut(s) 67, 233, 870, 1001
BsmAI GTCTC 3 cut(s) 165, 746, 1158
BsmBI CGTCTC 1 cut(s) 1158
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 2 cut(s) 883, 1078
BsoBI CYCGRG 2 cut(s) 162, 827
Bsp1286I GDGCHC 1 cut(s) 971
Bsp143I GATC 2 cut(s) 505, 1143
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 8 cut(s) 9, 375, 392, 520, 803, 917, 1023, 1053
BspANI GGCC 2 cut(s) 883, 1078
BspFNI CGCG 1 cut(s) 803
BspLI GGNNCC 2 cut(s) 297, 968
BspMAI CTGCAG 1 cut(s) 1090
BspOI GCTAGC 1 cut(s) 351
BspPI GGATC 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 966
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 1126
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 2 cut(s) 505, 1143
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 5 cut(s) 329, 716, 740, 1106, 1115
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 349, 442, 492
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 210, 516, 991
BstFNI CGCG 1 cut(s) 803
BstKTI GATC 2 cut(s) 508, 1146
BstMAI GTCTC 3 cut(s) 165, 746, 1158
BstMBI GATC 2 cut(s) 505, 1143
BstMWI GCNNNNNNNGC 2 cut(s) 560, 1075
BstPAI GACNNNNGTC 1 cut(s) 948
BstSFI CTRYAG 2 cut(s) 1086, 1111
BstSLI GKGCMC 1 cut(s) 971
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 1 cut(s) 456
BstV2I GAAGAC 2 cut(s) 696, 1209
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 2 cut(s) 883, 1078
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 3 cut(s) 210, 516, 991
BtsIMutI CAGTG 2 cut(s) 348, 1149
Cac8I GCNNGC 3 cut(s) 349, 442, 492
Cfr13I GGNCC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 330, 471
CviAII CATG 5 cut(s) 29, 370, 451, 535, 1138
CviQI GTAC 2 cut(s) 330, 471
DpnI GATC 2 cut(s) 507, 1145
DpnII GATC 2 cut(s) 505, 1143
EaeI YGGCCR 1 cut(s) 1076
Eco130I CCWWGG 1 cut(s) 534
Eco147I AGGCCT 1 cut(s) 883
Eco47I GGWCC 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 2 cut(s) 162, 827
EcoRI GAATTC 2 cut(s) 134, 1030
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 1158
FaeI CATG 5 cut(s) 32, 373, 454, 538, 1141
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FaqI GGGAC 1 cut(s) 855
FatI CATG 5 cut(s) 28, 369, 450, 534, 1137
Fnu4HI GCNGC 3 cut(s) 393, 445, 917
FokI GGATG 3 cut(s) 197, 503, 978
Fsp4HI GCNGC 3 cut(s) 393, 445, 917
FspBI CTAG 2 cut(s) 333, 348
GluI GCNGC 3 cut(s) 393, 445, 917
GsuI CTGGAG 2 cut(s) 324, 1077
HaeIII GGCC 2 cut(s) 883, 1078
HapII CCGG 2 cut(s) 686, 815
Hin1II CATG 5 cut(s) 32, 373, 454, 538, 1141
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 6 cut(s) 168, 230, 265, 272, 408, 456
HpaII CCGG 2 cut(s) 686, 815
HphI GGTGA 3 cut(s) 76, 109, 248
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 281, 361
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 718, 874
HpyCH4III ACNGT 5 cut(s) 329, 716, 740, 1106, 1115
HpyCH4V TGCA 7 cut(s) 419, 444, 494, 759, 848, 1088, 1119
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 1075
Hsp92II CATG 5 cut(s) 32, 373, 454, 538, 1141
Kzo9I GATC 2 cut(s) 505, 1143
LmnI GCTCC 2 cut(s) 301, 864
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 3 cut(s) 232, 580, 1056
MaeI CTAG 2 cut(s) 333, 348
MaeIII GTNAC 3 cut(s) 305, 1048, 1106
MalI GATC 2 cut(s) 507, 1145
MboI GATC 2 cut(s) 505, 1143
MboII GAAGA 8 cut(s) 251, 410, 569, 701, 859, 989, 1189, 1214
MfeI CAATTG 3 cut(s) 651, 665, 774
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 971
MlsI TGGCCA 1 cut(s) 1078
MluNI TGGCCA 1 cut(s) 1078
MlyI GAGTC 2 cut(s) 162, 266
MmeI TCCRAC 1 cut(s) 1007
Mox20I TGGCCA 1 cut(s) 1078
MroXI GAANNNNTTC 1 cut(s) 822
MscI TGGCCA 1 cut(s) 1078
MseI TTAA 5 cut(s) 78, 156, 501, 1013, 1193
MslI CAYNNNNRTG 1 cut(s) 533
Msp20I TGGCCA 1 cut(s) 1078
MspA1I CMGCKG 4 cut(s) 392, 569, 1023, 1055
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 2 cut(s) 686, 815
MunI CAATTG 3 cut(s) 651, 665, 774
Mva1269I GAATGC 1 cut(s) 222
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 2 cut(s) 560, 1075
NcoI CCATGG 1 cut(s) 534
NdeII GATC 2 cut(s) 505, 1143
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 5 cut(s) 32, 373, 454, 538, 1141
NlaIV GGNNCC 2 cut(s) 297, 968
NmuCI GTSAC 1 cut(s) 305
PaeR7I CTCGAG 2 cut(s) 162, 827
PceI AGGCCT 1 cut(s) 883
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 4 cut(s) 230, 265, 408, 456
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 1001
PkrI GCNGC 3 cut(s) 394, 446, 918
PleI GAGTC 2 cut(s) 162, 266
PpsI GAGTC 2 cut(s) 162, 266
PshAI GACNNNNGTC 1 cut(s) 948
PshBI ATTAAT 1 cut(s) 1193
PspN4I GGNNCC 2 cut(s) 297, 968
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 1 cut(s) 1090
PsuI RGATCY 1 cut(s) 505
PsyI GACNNNGTC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 2 cut(s) 331, 472
RsaNI GTAC 2 cut(s) 330, 471
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 5 cut(s) 78, 156, 501, 1013, 1193
SatI GCNGC 3 cut(s) 393, 445, 917
Sau3AI GATC 2 cut(s) 505, 1143
Sau96I GGNCC 1 cut(s) 656
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 2 cut(s) 162, 266
SduI GDGCHC 1 cut(s) 971
SfaNI GCATC 3 cut(s) 232, 580, 1056
SfcI CTRYAG 2 cut(s) 1086, 1111
Sfr274I CTCGAG 2 cut(s) 162, 827
SinI GGWCC 1 cut(s) 656
SlaI CTCGAG 2 cut(s) 162, 827
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 5 cut(s) 155, 162, 479, 827, 972
SmoI CTYRAG 5 cut(s) 155, 162, 479, 827, 972
SpeI ACTAGT 1 cut(s) 332
SseBI AGGCCT 1 cut(s) 883
SsiI CCGC 8 cut(s) 9, 375, 392, 520, 803, 917, 1023, 1053
SspMI CTAG 2 cut(s) 333, 348
StuI AGGCCT 1 cut(s) 883
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 5 cut(s) 329, 716, 740, 1106, 1115
TaqI TCGA 3 cut(s) 163, 546, 828
TatI WGTACW 1 cut(s) 329
TauI GCSGC 2 cut(s) 395, 919
TfiI GAWTC 4 cut(s) 230, 265, 408, 456
Tru1I TTAA 5 cut(s) 78, 156, 501, 1013, 1193
Tru9I TTAA 5 cut(s) 78, 156, 501, 1013, 1193
TscAI CASTG 2 cut(s) 348, 1156
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 444
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 4 cut(s) 358, 439, 1137, 1235
TspGWI ACGGA 2 cut(s) 265, 458
TspRI CASTG 2 cut(s) 348, 1156
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 1001
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 656
VspI ATTAAT 1 cut(s) 1193
XapI RAATTY 5 cut(s) 80, 134, 464, 923, 1030
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XhoI CTCGAG 2 cut(s) 162, 827
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 2 cut(s) 333, 348
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.