MD09G1035600.v1.1

26S proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000819
Physical Location & Seq
Reverse (-)
2178397 .. 2180170
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1035600.v1.1.491

Sequence Viewer

Length: 138 bp
ATGAAGTGGGATGAGAAGGAAGAAGAGATAGATTCAACACCACAACAATGGGAGGATGATTGGGATGATGATGATGTCAACGATGATTTCTCTCTGCAGCTGAAGACGGAACTCGAGAGCAACGCTGAGAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

46

Amino Acids

5.43

Weight (kDa)

4.05

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSS1_SEM1 PF05160 2 - 39 4.2e-12 DSS1/SEM1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 36
AluBI AGCT 2 cut(s) 100, 135
AluI AGCT 2 cut(s) 100, 135
Ama87I CYCGRG 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 110
BseGI GGATG 3 cut(s) 16, 61, 70
BseMII CTCAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 99
BspQI GCTCTTC 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 18, 125
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 3 cut(s) 16, 61, 70
BstSFI CTRYAG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 48
BtsCI GGATG 3 cut(s) 16, 61, 70
CviJI RGCY 2 cut(s) 100, 135
CviKI_1 RGCY 2 cut(s) 100, 135
DdeI CTNAG 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 18, 125
EarI CTCTTC 2 cut(s) 18, 125
Eco57I CTGAAG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 3 cut(s) 23, 68, 77
Fsp4HI GCNGC 1 cut(s) 98
FspEI CC 8 cut(s) 2, 34, 35, 38, 46, 47, 54, 92
GluI GCNGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 109
MboII GAAGA 3 cut(s) 32, 35, 115
MnlI CCTC 1 cut(s) 46
MslI CAYNNNNRTG 1 cut(s) 46
MspA1I CMGCKG 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 125
SatI GCNGC 1 cut(s) 98
SetI ASST 2 cut(s) 102, 137
SfcI CTRYAG 1 cut(s) 95
Sfr274I CTCGAG 1 cut(s) 113
SgeI CNNG 2 cut(s) 125, 127
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
TaqI TCGA 1 cut(s) 114
TfiI GAWTC 1 cut(s) 32
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.