RchiOBHm_Chr5g0071001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000819
Physical Location & Seq
Forward (+)
76930356 .. 76935056
4701 bp
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UTR
Exon/CDS
Intron
PRQ34616

Sequence Viewer

Length: 459 bp
ATGGGCGATCTTAGGCCTTGGTTGCCTGAGCCAAACGACGCTGTTTTGGAGGAGAGGCCGACCTCATCTTCTTCATCCGTGTTTTCAATTTCAACAAATCAGAGGGACATTTCCGCCGAGTACTGGCGGAGAGCGGAGGAGGCAATGCAAGGGGTTATAGCTCAGATCCAACGTACTCACGTCTCCGAGCGGAGAAGGAAAGCCGCCATTGATTACGTTCAGAGGATCATTGGAGCTTGTATTGGTTGTGTTCCCGTTTGGATCAGTACCTCTGAAGACGTATCTGCCGGATGGAGTGCTGTTGTTGAAAGGGAAGATCACAATATGGCTGCTGAGTTTATGGTGAAGAACGTGCATTTAATTCGAGCAAAGAACAAATGGGGGACTCTGAGATTTCAAACCACTAACCTCTCTATTTTGATCAGTATCAGAAACTTTCTTTTGGTGAAAGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.24

Weight (kDa)

7.83

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 134, 190
AciI CCGC 5 cut(s) 114, 127, 134, 190, 204
AclWI GGATC 3 cut(s) 160, 233, 269
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 3 cut(s) 122, 175, 268
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 4 cut(s) 87, 93, 308, 398
AjiI CACGTC 1 cut(s) 181
AluBI AGCT 2 cut(s) 161, 236
AluI AGCT 2 cut(s) 161, 236
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 3 cut(s) 160, 233, 269
AoxI GGCC 2 cut(s) 14, 56
ApeKI GCWGC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 355, 457
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 285
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 187
BisI GCNGC 2 cut(s) 204, 330
BlsI GCNGC 2 cut(s) 205, 331
BmcAI AGTACT 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 74, 296
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 4 cut(s) 18, 176, 324, 380
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 2 cut(s) 65, 152
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 2 cut(s) 16, 58
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 119, 397
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 119, 397
BsnI GGCC 2 cut(s) 16, 58
Bsp143I GATC 6 cut(s) 7, 165, 225, 261, 316, 420
BspACI CCGC 5 cut(s) 114, 127, 134, 190, 204
BspANI GGCC 2 cut(s) 16, 58
BspCNI CTCAG 4 cut(s) 19, 175, 325, 381
BspPI GGATC 3 cut(s) 160, 233, 269
BsrBI CCGCTC 2 cut(s) 134, 190
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 6 cut(s) 7, 165, 225, 261, 316, 420
BssT1I CCWWGG 1 cut(s) 17
BstDEI CTNAG 5 cut(s) 11, 27, 162, 333, 389
BstF5I GGATG 2 cut(s) 74, 296
BstKTI GATC 6 cut(s) 10, 168, 228, 264, 319, 423
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 6 cut(s) 7, 165, 225, 261, 316, 420
BstMWI GCNNNNNNNGC 2 cut(s) 22, 140
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 16, 58
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 2 cut(s) 74, 296
CseI GACGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 121, 174, 267
CviJI RGCY 7 cut(s) 16, 31, 58, 161, 203, 236, 329
CviKI_1 RGCY 7 cut(s) 16, 31, 58, 161, 203, 236, 329
CviQI GTAC 3 cut(s) 121, 174, 267
DdeI CTNAG 5 cut(s) 11, 27, 162, 333, 389
DpnI GATC 6 cut(s) 9, 167, 227, 263, 318, 422
DpnII GATC 6 cut(s) 7, 165, 225, 261, 316, 420
EciI GGCGGA 2 cut(s) 103, 142
Eco130I CCWWGG 1 cut(s) 17
Eco147I AGGCCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 187
FaiI YATR 3 cut(s) 158, 326, 341
FaqI GGGAC 2 cut(s) 119, 397
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 204, 330
FokI GGATG 2 cut(s) 61, 303
Fsp4HI GCNGC 2 cut(s) 204, 330
GluI GCNGC 2 cut(s) 204, 330
HaeIII GGCC 2 cut(s) 16, 58
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 47
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 355, 457
Hpy188I TCNGA 7 cut(s) 102, 165, 187, 222, 274, 390, 431
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 5 cut(s) 172, 180, 216, 279, 351
HpyCH4V TGCA 2 cut(s) 148, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 140
HpyF3I CTNAG 5 cut(s) 11, 27, 162, 333, 389
HpySE526I ACGT 5 cut(s) 172, 180, 216, 279, 351
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 6 cut(s) 7, 165, 225, 261, 316, 420
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 3 cut(s) 39, 109, 301
Lsp1109I GCAGC 1 cut(s) 316
MaeII ACGT 5 cut(s) 172, 180, 216, 279, 351
MalI GATC 6 cut(s) 9, 167, 227, 263, 318, 422
MbiI CCGCTC 2 cut(s) 134, 190
MboI GATC 6 cut(s) 7, 165, 225, 261, 316, 420
MboII GAAGA 5 cut(s) 60, 63, 287, 326, 358
MflI RGATCY 1 cut(s) 165
MluCI AATT 2 cut(s) 87, 360
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 9 cut(s) 43, 48, 73, 96, 130, 133, 216, 280, 419
MseI TTAA 1 cut(s) 359
MspI CCGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 22, 140
NdeII GATC 6 cut(s) 7, 165, 225, 261, 316, 420
NmeAIII GCCGAG 1 cut(s) 142
PceI AGGCCT 1 cut(s) 16
PkrI GCNGC 2 cut(s) 205, 331
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 3 cut(s) 122, 175, 268
RsaNI GTAC 3 cut(s) 121, 174, 267
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 2 cut(s) 204, 330
Sau3AI GATC 6 cut(s) 7, 165, 225, 261, 316, 420
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 1 cut(s) 379
Sse9I AATT 2 cut(s) 87, 360
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 5 cut(s) 114, 127, 134, 190, 204
StuI AGGCCT 1 cut(s) 16
StyI CCWWGG 1 cut(s) 17
TaiI ACGT 5 cut(s) 175, 183, 219, 282, 354
TaqI TCGA 1 cut(s) 364
TasI AATT 2 cut(s) 87, 360
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.