26S proteasome complex subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 191 | 2e-55 | TIR domain |
| TIR_2 | PF13676 | 25 - 122 | 2.6e-15 | TIR domain |
| NB-ARC | PF00931 | 208 - 376 | 1.6e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 447 - 516 | 4.1e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 705 - 917 | 1.1e-14 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 705 - 793 | 2e-07 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1010 |
| Acc65I | GGTACC | 1 cut(s) | 3619 |
| AccB1I | GGYRCC | 1 cut(s) | 3619 |
| AccI | GTMKAC | 2 cut(s) | 1231, 1547 |
| AciI | CCGC | 6 cut(s) | 507, 1774, 1799, 2486, 2617, 3523 |
| AclI | AACGTT | 1 cut(s) | 784 |
| AclWI | GGATC | 9 cut(s) | 158, 235, 353, 366, 1995, 2028, 2041, 2106, 3159 |
| AcoI | YGGCCR | 2 cut(s) | 3, 338 |
| AcuI | CTGAAG | 3 cut(s) | 1305, 2117, 2351 |
| AdeI | CACNNNGTG | 1 cut(s) | 3129 |
| AfaI | GTAC | 4 cut(s) | 624, 1239, 2336, 3621 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 276, 1195, 2380 |
| AflIII | ACRYGT | 1 cut(s) | 3227 |
| AgeI | ACCGGT | 1 cut(s) | 1234 |
| AjnI | CCWGG | 3 cut(s) | 1067, 1983, 2092 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3011, 3043 |
| Alw21I | GWGCWC | 5 cut(s) | 420, 979, 1101, 2853, 3336 |
| Alw26I | GTCTC | 1 cut(s) | 2791 |
| Alw44I | GTGCAC | 1 cut(s) | 2849 |
| AlwI | GGATC | 9 cut(s) | 158, 235, 353, 366, 1995, 2028, 2041, 2106, 3159 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2329, 2444 |
| Ama87I | CYCGRG | 1 cut(s) | 502 |
| AoxI | GGCC | 5 cut(s) | 3, 338, 1186, 1197, 2966 |
| ApaLI | GTGCAC | 1 cut(s) | 2849 |
| ApeKI | GCWGC | 7 cut(s) | 476, 1150, 1860, 1863, 2307, 2637, 3163 |
| AseI | ATTAAT | 1 cut(s) | 2127 |
| AsiGI | ACCGGT | 1 cut(s) | 1234 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 207, 294, 1290 |
| Asp718I | GGTACC | 1 cut(s) | 3619 |
| AspLEI | GCGC | 2 cut(s) | 1422, 2461 |
| AspS9I | GGNCC | 2 cut(s) | 952, 2966 |
| AsuC2I | CCSGG | 3 cut(s) | 503, 504, 1557 |
| AsuHPI | GGTGA | 4 cut(s) | 1571, 2045, 3331, 3604 |
| AvaI | CYCGRG | 1 cut(s) | 502 |
| AvaII | GGWCC | 1 cut(s) | 952 |
| BaeGI | GKGCMC | 2 cut(s) | 2357, 2853 |
| BalI | TGGCCA | 2 cut(s) | 5, 340 |
| BamHI | GGATCC | 2 cut(s) | 358, 2033 |
| BanI | GGYRCC | 1 cut(s) | 3619 |
| BanII | GRGCYC | 2 cut(s) | 1101, 1557 |
| BauI | CACGAG | 3 cut(s) | 618, 1085, 2641 |
| BbsI | GAAGAC | 3 cut(s) | 710, 1388, 3431 |
| Bbv12I | GWGCWC | 5 cut(s) | 420, 979, 1101, 2853, 3336 |
| BbvI | GCAGC | 7 cut(s) | 488, 1162, 1850, 1872, 2319, 2624, 3150 |
| BccI | CCATC | 8 cut(s) | 14, 447, 1256, 1313, 1403, 1513, 2770, 2815 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1753, 1787, 2629, 2663, 2981, 3015 |
| BciT130I | CCWGG | 3 cut(s) | 1069, 1985, 2094 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BcnI | CCSGG | 3 cut(s) | 503, 504, 1557 |
| BcoDI | GTCTC | 1 cut(s) | 2791 |
| BfaI | CTAG | 7 cut(s) | 806, 842, 1076, 1259, 1406, 1511, 1940 |
| BfmI | CTRYAG | 2 cut(s) | 1548, 1656 |
| BfoI | RGCGCY | 1 cut(s) | 2462 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BglII | AGATCT | 1 cut(s) | 2296 |
| BisI | GCNGC | 9 cut(s) | 477, 1151, 1775, 1861, 1864, 2308, 2487, 2638, 3164 |
| BlsI | GCNGC | 9 cut(s) | 478, 1152, 1776, 1862, 1865, 2309, 2488, 2639, 3165 |
| Bme1390I | CCNGG | 6 cut(s) | 503, 504, 1069, 1557, 1985, 2094 |
| Bme18I | GGWCC | 1 cut(s) | 952 |
| BmeT110I | CYCGRG | 1 cut(s) | 502 |
| BmgT120I | GGNCC | 2 cut(s) | 952, 2966 |
| BmiI | GGNNCC | 6 cut(s) | 360, 2035, 2430, 2931, 2967, 3621 |
| BmrFI | CCNGG | 6 cut(s) | 503, 504, 1069, 1557, 1985, 2094 |
| BmsI | GCATC | 8 cut(s) | 275, 1588, 1875, 2226, 2483, 2531, 2546, 2601 |
| BpiI | GAAGAC | 3 cut(s) | 710, 1388, 3431 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 448, 480, 2006, 2038 |
| BpmI | CTGGAG | 4 cut(s) | 1696, 2128, 2171, 2815 |
| BpuEI | CTTGAG | 4 cut(s) | 1167, 2084, 2102, 2218 |
| BpuMI | CCSGG | 3 cut(s) | 503, 504, 1557 |
| BsaAI | YACGTR | 1 cut(s) | 3228 |
| BsaBI | GATNNNNATC | 3 cut(s) | 174, 1050, 1758 |
| BsaJI | CCNNGG | 5 cut(s) | 304, 502, 1068, 1200, 2465 |
| BsaWI | WCCGGW | 1 cut(s) | 1234 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2788, 2818 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 276, 1195, 2380 |
| Bse118I | RCCGGY | 1 cut(s) | 1234 |
| Bse1I | ACTGG | 9 cut(s) | 297, 602, 955, 1329, 2111, 2218, 2912, 3342, 3526 |
| Bse3DI | GCAATG | 3 cut(s) | 1356, 2225, 3546 |
| Bse8I | GATNNNNATC | 3 cut(s) | 174, 1050, 1758 |
| BseBI | CCWGG | 3 cut(s) | 1069, 1985, 2094 |
| BseDI | CCNNGG | 5 cut(s) | 304, 502, 1068, 1200, 2465 |
| BseJI | GATNNNNATC | 3 cut(s) | 174, 1050, 1758 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 276, 1195, 2380 |
| BseMI | GCAATG | 3 cut(s) | 1356, 2225, 3546 |
| BseMII | CTCAG | 3 cut(s) | 71, 1982, 2897 |
| BseNI | ACTGG | 9 cut(s) | 297, 602, 955, 1329, 2111, 2218, 2912, 3342, 3526 |
| BseRI | GAGGAG | 2 cut(s) | 201, 2786 |
| BseSI | GKGCMC | 2 cut(s) | 2357, 2853 |
| BseXI | GCAGC | 7 cut(s) | 488, 1162, 1850, 1872, 2319, 2624, 3150 |
| BseYI | CCCAGC | 1 cut(s) | 3418 |
| BsgI | GTGCAG | 6 cut(s) | 543, 1613, 2623, 3149, 3348, 3452 |
| BshFI | GGCC | 5 cut(s) | 5, 340, 1188, 1199, 2968 |
| BshNI | GGYRCC | 1 cut(s) | 3619 |
| BshTI | ACCGGT | 1 cut(s) | 1234 |
| BsiHKAI | GWGCWC | 5 cut(s) | 420, 979, 1101, 2853, 3336 |
| BsiHKCI | CYCGRG | 1 cut(s) | 502 |
| BsiSI | CCGG | 4 cut(s) | 503, 972, 1235, 1557 |
| BslFI | GGGAC | 3 cut(s) | 860, 2634, 3504 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 276, 1195, 2380 |
| BsmAI | GTCTC | 1 cut(s) | 2791 |
| BsmFI | GGGAC | 3 cut(s) | 860, 2634, 3504 |
| BsmI | GAATGC | 2 cut(s) | 1290, 2594 |
| BsnI | GGCC | 5 cut(s) | 5, 340, 1188, 1199, 2968 |
| BsoBI | CYCGRG | 1 cut(s) | 502 |
| Bsp1286I | GDGCHC | 7 cut(s) | 420, 979, 1101, 1557, 2357, 2853, 3336 |
| Bsp1407I | TGTACA | 1 cut(s) | 622 |
| BspACI | CCGC | 6 cut(s) | 507, 1774, 1799, 2486, 2617, 3523 |
| BspANI | GGCC | 5 cut(s) | 5, 340, 1188, 1199, 2968 |
| BspCNI | CTCAG | 3 cut(s) | 72, 1983, 2896 |
| BspLI | GGNNCC | 6 cut(s) | 360, 2035, 2430, 2931, 2967, 3621 |
| BspPI | GGATC | 9 cut(s) | 158, 235, 353, 366, 1995, 2028, 2041, 2106, 3159 |
| BspT107I | GGYRCC | 1 cut(s) | 3619 |
| BsrDI | GCAATG | 3 cut(s) | 1356, 2225, 3546 |
| BsrFI | RCCGGY | 1 cut(s) | 1234 |
| BsrGI | TGTACA | 1 cut(s) | 622 |
| BsrI | ACTGG | 9 cut(s) | 297, 602, 955, 1329, 2111, 2218, 2912, 3342, 3526 |
| BssAI | RCCGGY | 1 cut(s) | 1234 |
| BssECI | CCNNGG | 5 cut(s) | 304, 502, 1068, 1200, 2465 |
| BssSI | CACGAG | 3 cut(s) | 618, 1085, 2641 |
| BssT1I | CCWWGG | 3 cut(s) | 304, 1200, 2465 |
| Bst2BI | CACGAG | 3 cut(s) | 618, 1085, 2641 |
| Bst2UI | CCWGG | 3 cut(s) | 1069, 1985, 2094 |
| Bst4CI | ACNGT | 2 cut(s) | 1796, 3127 |
| Bst6I | CTCTTC | 4 cut(s) | 40, 1509, 2029, 2867 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1255, 1507 |
| BstAUI | TGTACA | 1 cut(s) | 622 |
| BstBAI | YACGTR | 1 cut(s) | 3228 |
| BstC8I | GCNNGC | 5 cut(s) | 509, 1251, 1499, 2853, 3467 |
| BstDEI | CTNAG | 7 cut(s) | 80, 643, 1156, 1975, 1991, 2883, 3387 |
| BstH2I | RGCGCY | 1 cut(s) | 2462 |
| BstHHI | GCGC | 2 cut(s) | 1422, 2461 |
| BstMAI | GTCTC | 1 cut(s) | 2791 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1255, 1507, 1561, 2086, 2467, 3214, 3560 |
| BstNI | CCWGG | 3 cut(s) | 1069, 1985, 2094 |
| BstNSI | RCATGY | 2 cut(s) | 634, 1501 |
| BstSCI | CCNGG | 6 cut(s) | 501, 502, 1067, 1555, 1983, 2092 |
| BstSFI | CTRYAG | 2 cut(s) | 1548, 1656 |
| BstSLI | GKGCMC | 2 cut(s) | 2357, 2853 |
| BstV1I | GCAGC | 7 cut(s) | 488, 1162, 1850, 1872, 2319, 2624, 3150 |
| BstV2I | GAAGAC | 3 cut(s) | 710, 1388, 3431 |
| BstX2I | RGATCY | 5 cut(s) | 358, 1987, 2033, 2111, 2296 |
| BstYI | RGATCY | 5 cut(s) | 358, 1987, 2033, 2111, 2296 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 5 cut(s) | 5, 340, 1188, 1199, 2968 |
| BtsI | GCAGTG | 1 cut(s) | 2481 |
| BtsIMutI | CAGTG | 4 cut(s) | 2442, 2481, 3132, 3533 |
| Cac8I | GCNNGC | 5 cut(s) | 509, 1251, 1499, 2853, 3467 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2329, 2444 |
| CfoI | GCGC | 2 cut(s) | 1422, 2461 |
| Cfr10I | RCCGGY | 1 cut(s) | 1234 |
| Cfr13I | GGNCC | 2 cut(s) | 952, 2966 |
| Cfr9I | CCCGGG | 1 cut(s) | 502 |
| CseI | GACGC | 3 cut(s) | 971, 3070, 3197 |
| Csp6I | GTAC | 4 cut(s) | 623, 1238, 2335, 3620 |
| CspAI | ACCGGT | 1 cut(s) | 1234 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2364, 2399 |
| CviQI | GTAC | 4 cut(s) | 623, 1238, 2335, 3620 |
| DdeI | CTNAG | 7 cut(s) | 80, 643, 1156, 1975, 1991, 2883, 3387 |
| DraI | TTTAAA | 1 cut(s) | 3405 |
| DraIII | CACNNNGTG | 1 cut(s) | 3129 |
| EaeI | YGGCCR | 2 cut(s) | 3, 338 |
| Eam1104I | CTCTTC | 4 cut(s) | 40, 1509, 2029, 2867 |
| EarI | CTCTTC | 4 cut(s) | 40, 1509, 2029, 2867 |
| EciI | GGCGGA | 1 cut(s) | 3512 |
| Ecl136II | GAGCTC | 1 cut(s) | 1099 |
| Eco130I | CCWWGG | 3 cut(s) | 304, 1200, 2465 |
| Eco147I | AGGCCT | 1 cut(s) | 1188 |
| Eco24I | GRGCYC | 2 cut(s) | 1101, 1557 |
| Eco32I | GATATC | 1 cut(s) | 2246 |
| Eco47I | GGWCC | 1 cut(s) | 952 |
| Eco53kI | GAGCTC | 1 cut(s) | 1099 |
| Eco57I | CTGAAG | 3 cut(s) | 1305, 2117, 2351 |
| Eco88I | CYCGRG | 1 cut(s) | 502 |
| EcoICRI | GAGCTC | 1 cut(s) | 1099 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2966 |
| EcoRI | GAATTC | 2 cut(s) | 1886, 2447 |
| EcoRII | CCWGG | 3 cut(s) | 1067, 1983, 2092 |
| EcoRV | GATATC | 1 cut(s) | 2246 |
| EcoT14I | CCWWGG | 3 cut(s) | 304, 1200, 2465 |
| EcoT22I | ATGCAT | 2 cut(s) | 1503, 2594 |
| EcoT38I | GRGCYC | 2 cut(s) | 1101, 1557 |
| ErhI | CCWWGG | 3 cut(s) | 304, 1200, 2465 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 618, 650, 1335, 1367, 3464, 3496 |
| FaqI | GGGAC | 3 cut(s) | 860, 2634, 3504 |
| FauI | CCCGC | 2 cut(s) | 500, 2610 |
| FblI | GTMKAC | 2 cut(s) | 1231, 1547 |
| Fnu4HI | GCNGC | 9 cut(s) | 477, 1151, 1775, 1861, 1864, 2308, 2487, 2638, 3164 |
| FriOI | GRGCYC | 2 cut(s) | 1101, 1557 |
| Fsp4HI | GCNGC | 9 cut(s) | 477, 1151, 1775, 1861, 1864, 2308, 2487, 2638, 3164 |
| FspBI | CTAG | 7 cut(s) | 806, 842, 1076, 1259, 1406, 1511, 1940 |
| GlaI | GCGC | 2 cut(s) | 1421, 2460 |
| GluI | GCNGC | 9 cut(s) | 477, 1151, 1775, 1861, 1864, 2308, 2487, 2638, 3164 |
| GsaI | CCCAGC | 1 cut(s) | 3422 |
| GsuI | CTGGAG | 4 cut(s) | 1696, 2128, 2171, 2815 |
| HaeII | RGCGCY | 1 cut(s) | 2462 |
| HaeIII | GGCC | 5 cut(s) | 5, 340, 1188, 1199, 2968 |
| HapII | CCGG | 4 cut(s) | 503, 972, 1235, 1557 |
| HgaI | GACGC | 3 cut(s) | 971, 3070, 3197 |
| HhaI | GCGC | 2 cut(s) | 1422, 2461 |
| Hin6I | GCGC | 2 cut(s) | 1420, 2459 |
| HinP1I | GCGC | 2 cut(s) | 1420, 2459 |
| HincII | GTYRAC | 2 cut(s) | 2104, 2611 |
| HindII | GTYRAC | 2 cut(s) | 2104, 2611 |
| HindIII | AAGCTT | 3 cut(s) | 2045, 2078, 3473 |
| HpaII | CCGG | 4 cut(s) | 503, 972, 1235, 1557 |
| HphI | GGTGA | 4 cut(s) | 1571, 2045, 3331, 3604 |
| HpyCH4III | ACNGT | 2 cut(s) | 1796, 3127 |
| HpyCH4IV | ACGT | 5 cut(s) | 369, 784, 1873, 2337, 3227 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1255, 1507, 1561, 2086, 2467, 3214, 3560 |
| HpyF3I | CTNAG | 7 cut(s) | 80, 643, 1156, 1975, 1991, 2883, 3387 |
| HpySE526I | ACGT | 5 cut(s) | 369, 784, 1873, 2337, 3227 |
| HspAI | GCGC | 2 cut(s) | 1420, 2459 |
| KpnI | GGTACC | 1 cut(s) | 3623 |
| LmnI | GCTCC | 3 cut(s) | 974, 2428, 2743 |
| Lsp1109I | GCAGC | 7 cut(s) | 488, 1162, 1850, 1872, 2319, 2624, 3150 |
| LweI | GCATC | 8 cut(s) | 275, 1588, 1875, 2226, 2483, 2531, 2546, 2601 |
| MaeI | CTAG | 7 cut(s) | 806, 842, 1076, 1259, 1406, 1511, 1940 |
| MaeII | ACGT | 5 cut(s) | 369, 784, 1873, 2337, 3227 |
| MaeIII | GTNAC | 2 cut(s) | 790, 1790 |
| MfeI | CAATTG | 4 cut(s) | 11, 711, 735, 1110 |
| MflI | RGATCY | 5 cut(s) | 358, 1987, 2033, 2111, 2296 |
| MhlI | GDGCHC | 7 cut(s) | 420, 979, 1101, 1557, 2357, 2853, 3336 |
| MlsI | TGGCCA | 2 cut(s) | 5, 340 |
| MluNI | TGGCCA | 2 cut(s) | 5, 340 |
| MlyI | GAGTC | 8 cut(s) | 1553, 1687, 2396, 2616, 2793, 2865, 3155, 3243 |
| MmeI | TCCRAC | 5 cut(s) | 1358, 2011, 2426, 2667, 3129 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 340 |
| Mph1103I | ATGCAT | 2 cut(s) | 1503, 2594 |
| MroXI | GAANNNNTTC | 3 cut(s) | 207, 294, 1290 |
| MscI | TGGCCA | 2 cut(s) | 5, 340 |
| MslI | CAYNNNNRTG | 7 cut(s) | 516, 1222, 1224, 1587, 3096, 3498, 3573 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 340 |
| MspA1I | CMGCKG | 2 cut(s) | 1863, 2946 |
| MspI | CCGG | 4 cut(s) | 503, 972, 1235, 1557 |
| MspR9I | CCNGG | 6 cut(s) | 503, 504, 1069, 1557, 1985, 2094 |
| MunI | CAATTG | 4 cut(s) | 11, 711, 735, 1110 |
| Mva1269I | GAATGC | 2 cut(s) | 1290, 2594 |
| MvaI | CCWGG | 3 cut(s) | 1069, 1985, 2094 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1255, 1507, 1561, 2086, 2467, 3214, 3560 |
| NciI | CCSGG | 3 cut(s) | 503, 504, 1557 |
| NlaIV | GGNNCC | 6 cut(s) | 360, 2035, 2430, 2931, 2967, 3621 |
| NmeAIII | GCCGAG | 1 cut(s) | 3099 |
| NmuCI | GTSAC | 2 cut(s) | 790, 1790 |
| NsiI | ATGCAT | 2 cut(s) | 1503, 2594 |
| NspI | RCATGY | 2 cut(s) | 634, 1501 |
| PaeI | GCATGC | 1 cut(s) | 1501 |
| PceI | AGGCCT | 1 cut(s) | 1188 |
| PctI | GAATGC | 2 cut(s) | 1290, 2594 |
| PdmI | GAANNNNTTC | 3 cut(s) | 207, 294, 1290 |
| PflFI | GACNNNGTC | 1 cut(s) | 2802 |
| PfoI | TCCNGGA | 2 cut(s) | 1983, 2092 |
| PinAI | ACCGGT | 1 cut(s) | 1234 |
| PkrI | GCNGC | 9 cut(s) | 478, 1152, 1776, 1862, 1865, 2309, 2488, 2639, 3165 |
| PleI | GAGTC | 8 cut(s) | 1552, 1686, 2395, 2616, 2793, 2865, 3154, 3242 |
| PpsI | GAGTC | 8 cut(s) | 1552, 1686, 2395, 2616, 2793, 2865, 3154, 3242 |
| Ppu21I | YACGTR | 1 cut(s) | 3228 |
| PshBI | ATTAAT | 1 cut(s) | 2127 |
| PsiI | TTATAA | 1 cut(s) | 1010 |
| Psp124BI | GAGCTC | 1 cut(s) | 1101 |
| Psp1406I | AACGTT | 1 cut(s) | 784 |
| Psp6I | CCWGG | 3 cut(s) | 1067, 1983, 2092 |
| PspFI | CCCAGC | 1 cut(s) | 3418 |
| PspGI | CCWGG | 3 cut(s) | 1067, 1983, 2092 |
| PspN4I | GGNNCC | 6 cut(s) | 360, 2035, 2430, 2931, 2967, 3621 |
| PspPI | GGNCC | 2 cut(s) | 952, 2966 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2329, 2444 |
| PsuI | RGATCY | 5 cut(s) | 358, 1987, 2033, 2111, 2296 |
| PsyI | GACNNNGTC | 1 cut(s) | 2802 |
| PvuII | CAGCTG | 2 cut(s) | 1863, 2946 |
| RsaI | GTAC | 4 cut(s) | 624, 1239, 2336, 3621 |
| RsaNI | GTAC | 4 cut(s) | 623, 1238, 2335, 3620 |
| RseI | CAYNNNNRTG | 7 cut(s) | 516, 1222, 1224, 1587, 3096, 3498, 3573 |
| SacI | GAGCTC | 1 cut(s) | 1101 |
| SatI | GCNGC | 9 cut(s) | 477, 1151, 1775, 1861, 1864, 2308, 2487, 2638, 3164 |
| Sau96I | GGNCC | 2 cut(s) | 952, 2966 |
| SchI | GAGTC | 8 cut(s) | 1553, 1687, 2396, 2616, 2793, 2865, 3155, 3243 |
| ScrFI | CCNGG | 6 cut(s) | 503, 504, 1069, 1557, 1985, 2094 |
| SduI | GDGCHC | 7 cut(s) | 420, 979, 1101, 1557, 2357, 2853, 3336 |
| SfaNI | GCATC | 8 cut(s) | 275, 1588, 1875, 2226, 2483, 2531, 2546, 2601 |
| SfcI | CTRYAG | 2 cut(s) | 1548, 1656 |
| SinI | GGWCC | 1 cut(s) | 952 |
| SmaI | CCCGGG | 1 cut(s) | 504 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 516, 1222, 1224, 1587, 3096, 3498, 3573 |
| SmlI | CTYRAG | 4 cut(s) | 1182, 2063, 2081, 2197 |
| SmoI | CTYRAG | 4 cut(s) | 1182, 2063, 2081, 2197 |
| SphI | GCATGC | 1 cut(s) | 1501 |
| SseBI | AGGCCT | 1 cut(s) | 1188 |
| SsiI | CCGC | 6 cut(s) | 507, 1774, 1799, 2486, 2617, 3523 |
| SspMI | CTAG | 7 cut(s) | 806, 842, 1076, 1259, 1406, 1511, 1940 |
| SstI | GAGCTC | 1 cut(s) | 1101 |
| StuI | AGGCCT | 1 cut(s) | 1188 |
| StyD4I | CCNGG | 6 cut(s) | 501, 502, 1067, 1555, 1983, 2092 |
| StyI | CCWWGG | 3 cut(s) | 304, 1200, 2465 |
| TaaI | ACNGT | 2 cut(s) | 1796, 3127 |
| TaiI | ACGT | 5 cut(s) | 372, 787, 1876, 2340, 3230 |
| TaqI | TCGA | 5 cut(s) | 2040, 2625, 2869, 2991, 3232 |
| TatI | WGTACW | 1 cut(s) | 622 |
| TauI | GCSGC | 2 cut(s) | 1777, 2489 |
| TscAI | CASTG | 4 cut(s) | 2449, 2488, 3132, 3533 |
| TseFI | GTSAC | 2 cut(s) | 790, 1790 |
| TseI | GCWGC | 7 cut(s) | 476, 1150, 1860, 1863, 2307, 2637, 3163 |
| Tsp45I | GTSAC | 2 cut(s) | 790, 1790 |
| TspGWI | ACGGA | 3 cut(s) | 778, 3201, 3314 |
| TspMI | CCCGGG | 1 cut(s) | 502 |
| TspRI | CASTG | 4 cut(s) | 2449, 2488, 3132, 3533 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2802 |
| VneI | GTGCAC | 1 cut(s) | 2849 |
| VpaK11BI | GGWCC | 1 cut(s) | 952 |
| VspI | ATTAAT | 1 cut(s) | 2127 |
| XceI | RCATGY | 2 cut(s) | 634, 1501 |
| XmaI | CCCGGG | 1 cut(s) | 502 |
| XmiI | GTMKAC | 2 cut(s) | 1231, 1547 |
| XmnI | GAANNNNTTC | 3 cut(s) | 207, 294, 1290 |
| XspI | CTAG | 7 cut(s) | 806, 842, 1076, 1259, 1406, 1511, 1940 |
| Zsp2I | ATGCAT | 2 cut(s) | 1503, 2594 |