Rorug05G0208000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000819
Physical Location & Seq
Forward (+)
20720677 .. 20743386
22710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0208000.1

Sequence Viewer

Length: 1443 bp
ATGGCTTCCGCTTATCATCATAAGCCTCATGCTGTTTGTATTCCAGTTCCAGCTCAAAGCCACATAAAGGCTATGCTTAAATTAACCAAAATCCTCCACCACAGAGGCTTTCACATTACCTTTGTTAACACAGAATTCAACCACAAGCGATTTCTTAAGTCTCGAGGACCCAACTCCCTCGATGGCTTACCTGATTTTCACTTTGAAGCCATCCCTGATGGCATTCCAGAATCAGGTGAAGATGCCACCCAAGATGGCACTTTGATTTTTGACTCCATCAGAAATCATCTCTTGGCTCCATTTCGTGACCTCCTGATAAAACTCAACAGTACTAGTCCTCCAGTGACTTGCATTGTTTCAGATGGTTTCATGTCCCCTTTTACTATAACAGCGGCAGAAGAACTTGGAATCCCTATTGCATTGTTTTACACTATTTCTGCTTGCAGCTTCATGGGATTGAGGAAATTCCGTACTTTGCTTGAGAAAGGGCTTGCACCACTTAAAGATGAGACTTGTGTGACAAACGGTTTTCTGGACAATGTTATAGAATGGATTCCAGAAAAGAAAGATATCCGTTTAAGGGATCTACCATCCTTTTGTCGAACTACAGATCCAGATGACATCATGTTCAAGTCCACTATGGAAGCAGTCGAAAACGCAAATAAAGCATCAGCTGTTGTTCTTCTCACATTTGATGCTTTGGAGAAAGATGTTTTGGAAGCTCTCTCCTCATCTATTTCTCCACCTGTTTATACAATTGGTCCTATCCAATTGCTATTAAATCAAATACCCGAAGACCCTTTGAAGCCTATGGGATACAGTCTTTGGAAGGAGGAAGCAGACTGTCTCCAATGGCTAAACTGCAAAGCACCGAACTCAATTGTTTATGTCAATTTTGGAAGTGTCACGGTTTTGACACCGGAACAGCTTCTCGAGTTTGGTTGGGGACTTGCAAATACCAAGCTCCCCTTCCTCTGGGTTATTAGGCCTGATTTGGTTGCTGGAAAATCAGCAATCTTGCCACCAGAGTTTGAAGCTGAAACCAAAGACAGAGGTCTAATAGCAAGTTGGTGCCCTCAAGAAGAAGTCCTAAACCATCCATCAGTTGGAGGGTTTTTAACACACTGCGGTTGGAATTCAACCATTGAGAGTGTCACAGCTGGAATGCCGATGCTGTGTTGGCCATTCTTTGCAGACCAGCAAACAAACAGTTACTACAGTTGCAACGAATGGGGAATTGGCATGGAGATCAACACTGATGTCAAGAGAGACAATGTGGAGAAGCTTGTAAAGGAGTTAATGGAGGGAGACAAGGGAAAGAAAATGAAAAGCAAGGCCTTGGAGTGGAAGAAACTAGCTGAAGAAGCCACTGCTCCGTATGGTTCGTCATCAACAAACTTGGACAATTTAGTGAGTCAAGTCCTATTAAGAAAGCGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

480

Amino Acids

53.56

Weight (kDa)

5.55

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 216 - 440 2e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1071
AccB7I CCANNNNNTGG 1 cut(s) 1106
AciI CCGC 3 cut(s) 9, 392, 1128
AclWI GGATC 2 cut(s) 591, 605
AcoI YGGCCR 1 cut(s) 1181
AcsI RAATTY 3 cut(s) 134, 464, 1135
AcuI CTGAAG 1 cut(s) 1380
AfaI GTAC 2 cut(s) 331, 472
AfiI CCNNNNNNNGG 6 cut(s) 67, 233, 580, 975, 1106, 1344
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 6 cut(s) 139, 206, 631, 805, 1034, 1140
AhlI ACTAGT 1 cut(s) 332
AjuI GAANNNNNNNTTGG 6 cut(s) 698, 730, 953, 985, 1221, 1253
AloI GAACNNNNNNTCC 4 cut(s) 393, 425, 595, 627
Alw26I GTCTC 5 cut(s) 165, 503, 851, 1263, 1302
AlwI GGATC 2 cut(s) 591, 605
Ama87I CYCGRG 2 cut(s) 162, 932
AoxI GGCC 3 cut(s) 986, 1181, 1335
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 3 cut(s) 134, 464, 1135
Asp700I GAANNNNTTC 2 cut(s) 552, 927
AspLEI GCGC 1 cut(s) 1437
AspS9I GGNCC 2 cut(s) 167, 761
AsuHPI GGTGA 1 cut(s) 248
AvaI CYCGRG 2 cut(s) 162, 932
AvaII GGWCC 2 cut(s) 167, 761
BaeGI GKGCMC 1 cut(s) 1076
BalI TGGCCA 1 cut(s) 1183
BanI GGYRCC 1 cut(s) 1071
BbsI GAAGAC 1 cut(s) 801
BbvI GCAGC 1 cut(s) 456
BccI CCATC 9 cut(s) 176, 212, 218, 248, 284, 356, 598, 1104, 1108
BciVI GTATCC 1 cut(s) 809
BcoDI GTCTC 5 cut(s) 165, 503, 851, 1263, 1302
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 333, 1355
BfmI CTRYAG 2 cut(s) 606, 1216
BfrI CTTAAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 809
BisI GCNGC 2 cut(s) 393, 445
BlsI GCNGC 2 cut(s) 394, 446
BmcAI AGTACT 1 cut(s) 331
Bme18I GGWCC 2 cut(s) 167, 761
BmeT110I CYCGRG 2 cut(s) 162, 932
BmgT120I GGNCC 2 cut(s) 167, 761
BmiI GGNNCC 3 cut(s) 169, 297, 1073
BmsI GCATC 4 cut(s) 232, 677, 685, 1161
BoxI GACNNNNGTC 1 cut(s) 1053
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 500, 1062
BsaJI CCNNGG 1 cut(s) 1338
BsaWI WCCGGW 1 cut(s) 919
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 233, 580, 975, 1106, 1344
Bse1I ACTGG 2 cut(s) 44, 341
BseDI CCNNGG 1 cut(s) 1338
BseGI GGATG 3 cut(s) 210, 590, 1096
BseLI CCNNNNNNNGG 6 cut(s) 67, 233, 580, 975, 1106, 1344
BseNI ACTGG 2 cut(s) 44, 341
BseRI GAGGAG 1 cut(s) 718
BseSI GKGCMC 1 cut(s) 1076
BseXI GCAGC 1 cut(s) 456
BshFI GGCC 3 cut(s) 988, 1183, 1337
BshNI GGYRCC 1 cut(s) 1071
BsiHKCI CYCGRG 2 cut(s) 162, 932
BsiSI CCGG 1 cut(s) 920
BslFI GGGAC 2 cut(s) 358, 960
BslI CCNNNNNNNGG 6 cut(s) 67, 233, 580, 975, 1106, 1344
BsmAI GTCTC 5 cut(s) 165, 503, 851, 1263, 1302
BsmFI GGGAC 2 cut(s) 358, 960
BsmI GAATGC 2 cut(s) 222, 1170
BsnI GGCC 3 cut(s) 988, 1183, 1337
BsoBI CYCGRG 2 cut(s) 162, 932
Bsp1286I GDGCHC 1 cut(s) 1076
Bsp143I GATC 3 cut(s) 583, 610, 1248
BspACI CCGC 3 cut(s) 9, 392, 1128
BspANI GGCC 3 cut(s) 988, 1183, 1337
BspLI GGNNCC 3 cut(s) 169, 297, 1073
BspPI GGATC 2 cut(s) 591, 605
BspT107I GGYRCC 1 cut(s) 1071
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 2 cut(s) 44, 341
BssECI CCNNGG 1 cut(s) 1338
BssMI GATC 3 cut(s) 583, 610, 1248
BssT1I CCWWGG 1 cut(s) 1338
Bst4CI ACNGT 7 cut(s) 329, 527, 821, 845, 910, 1211, 1220
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 442, 492
BstF5I GGATG 3 cut(s) 210, 590, 1096
BstHHI GCGC 1 cut(s) 1437
BstKTI GATC 3 cut(s) 586, 613, 1251
BstMAI GTCTC 5 cut(s) 165, 503, 851, 1263, 1302
BstMBI GATC 3 cut(s) 583, 610, 1248
BstMWI GCNNNNNNNGC 3 cut(s) 665, 1180, 1364
BstPAI GACNNNNGTC 1 cut(s) 1053
BstSFI CTRYAG 2 cut(s) 606, 1216
BstSLI GKGCMC 1 cut(s) 1076
BstV1I GCAGC 1 cut(s) 456
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 2 cut(s) 583, 610
BstYI RGATCY 2 cut(s) 583, 610
BsuI GTATCC 1 cut(s) 809
BsuRI GGCC 3 cut(s) 988, 1183, 1337
BtsCI GGATG 3 cut(s) 210, 590, 1096
BtsI GCAGTG 2 cut(s) 1123, 1368
BtsIMutI CAGTG 4 cut(s) 348, 1123, 1254, 1368
Cac8I GCNNGC 2 cut(s) 442, 492
CfoI GCGC 1 cut(s) 1437
Cfr13I GGNCC 2 cut(s) 167, 761
Csp6I GTAC 2 cut(s) 330, 471
CviAII CATG 5 cut(s) 29, 370, 451, 625, 1243
CviQI GTAC 2 cut(s) 330, 471
DpnI GATC 3 cut(s) 585, 612, 1250
DpnII GATC 3 cut(s) 583, 610, 1248
EaeI YGGCCR 1 cut(s) 1181
Eco130I CCWWGG 1 cut(s) 1338
Eco147I AGGCCT 2 cut(s) 988, 1337
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 167, 761
Eco57I CTGAAG 1 cut(s) 1380
Eco88I CYCGRG 2 cut(s) 162, 932
EcoO109I RGGNCCY 1 cut(s) 167
EcoRI GAATTC 2 cut(s) 134, 1135
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 1338
ErhI CCWWGG 1 cut(s) 1338
FaeI CATG 5 cut(s) 32, 373, 454, 628, 1246
FalI AAGNNNNNCTT 2 cut(s) 953, 985
FaqI GGGAC 2 cut(s) 358, 960
FatI CATG 5 cut(s) 28, 369, 450, 624, 1242
Fnu4HI GCNGC 2 cut(s) 393, 445
FokI GGATG 3 cut(s) 197, 577, 1083
Fsp4HI GCNGC 2 cut(s) 393, 445
FspBI CTAG 2 cut(s) 333, 1355
GlaI GCGC 1 cut(s) 1436
GluI GCNGC 2 cut(s) 393, 445
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 3 cut(s) 988, 1183, 1337
HapII CCGG 1 cut(s) 920
HhaI GCGC 1 cut(s) 1437
Hin1II CATG 5 cut(s) 32, 373, 454, 628, 1246
Hin6I GCGC 1 cut(s) 1435
HinP1I GCGC 1 cut(s) 1435
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 1283
HinfI GANTC 5 cut(s) 230, 272, 408, 553, 1414
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 1 cut(s) 920
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 127, 636
Hpy188I TCNGA 2 cut(s) 281, 361
Hpy8I GTNNAC 2 cut(s) 127, 636
HpyAV CCTTC 2 cut(s) 823, 979
HpyCH4III ACNGT 7 cut(s) 329, 527, 821, 845, 910, 1211, 1220
HpyCH4V TGCA 8 cut(s) 351, 419, 444, 494, 864, 953, 1193, 1224
HpyF10VI GCNNNNNNNGC 3 cut(s) 665, 1180, 1364
Hsp92II CATG 5 cut(s) 32, 373, 454, 628, 1246
HspAI GCGC 1 cut(s) 1435
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 583, 610, 1248
LmnI GCTCC 3 cut(s) 301, 969, 1378
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 4 cut(s) 232, 677, 685, 1161
MaeI CTAG 2 cut(s) 333, 1355
MaeIII GTNAC 6 cut(s) 305, 343, 517, 904, 1153, 1211
MalI GATC 3 cut(s) 585, 612, 1250
MboI GATC 3 cut(s) 583, 610, 1248
MboII GAAGA 7 cut(s) 251, 410, 674, 806, 1094, 1360, 1373
MfeI CAATTG 3 cut(s) 756, 770, 879
MflI RGATCY 2 cut(s) 583, 610
MhlI GDGCHC 1 cut(s) 1076
MlsI TGGCCA 1 cut(s) 1183
MluNI TGGCCA 1 cut(s) 1183
MlyI GAGTC 2 cut(s) 266, 1423
MmeI TCCRAC 2 cut(s) 1087, 1112
Mox20I TGGCCA 1 cut(s) 1183
MroXI GAANNNNTTC 2 cut(s) 552, 927
MscI TGGCCA 1 cut(s) 1183
Msp20I TGGCCA 1 cut(s) 1183
MspA1I CMGCKG 3 cut(s) 392, 674, 1160
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 920
MunI CAATTG 3 cut(s) 756, 770, 879
Mva1269I GAATGC 2 cut(s) 222, 1170
MwoI GCNNNNNNNGC 3 cut(s) 665, 1180, 1364
NdeII GATC 3 cut(s) 583, 610, 1248
NlaIII CATG 5 cut(s) 32, 373, 454, 628, 1246
NlaIV GGNNCC 3 cut(s) 169, 297, 1073
NmuCI GTSAC 5 cut(s) 305, 343, 517, 904, 1153
PaeR7I CTCGAG 2 cut(s) 162, 932
PceI AGGCCT 2 cut(s) 988, 1337
PctI GAATGC 2 cut(s) 222, 1170
PdmI GAANNNNTTC 2 cut(s) 552, 927
PfeI GAWTC 3 cut(s) 230, 408, 553
PflMI CCANNNNNTGG 1 cut(s) 1106
PkrI GCNGC 2 cut(s) 394, 446
PleI GAGTC 2 cut(s) 266, 1422
PpsI GAGTC 2 cut(s) 266, 1422
PpuMI RGGWCCY 1 cut(s) 167
PshAI GACNNNNGTC 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 169, 297, 1073
PspPI GGNCC 2 cut(s) 167, 761
PspPPI RGGWCCY 1 cut(s) 167
PsuI RGATCY 2 cut(s) 583, 610
PvuII CAGCTG 2 cut(s) 674, 1160
RsaI GTAC 2 cut(s) 331, 472
RsaNI GTAC 2 cut(s) 330, 471
SatI GCNGC 2 cut(s) 393, 445
Sau3AI GATC 3 cut(s) 583, 610, 1248
Sau96I GGNCC 2 cut(s) 167, 761
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 2 cut(s) 266, 1423
SduI GDGCHC 1 cut(s) 1076
SfaNI GCATC 4 cut(s) 232, 677, 685, 1161
SfcI CTRYAG 2 cut(s) 606, 1216
Sfr274I CTCGAG 2 cut(s) 162, 932
SinI GGWCC 2 cut(s) 167, 761
SlaI CTCGAG 2 cut(s) 162, 932
SmlI CTYRAG 5 cut(s) 155, 162, 479, 932, 1077
SmoI CTYRAG 5 cut(s) 155, 162, 479, 932, 1077
SpeI ACTAGT 1 cut(s) 332
SseBI AGGCCT 2 cut(s) 988, 1337
SsiI CCGC 3 cut(s) 9, 392, 1128
SspMI CTAG 2 cut(s) 333, 1355
StuI AGGCCT 2 cut(s) 988, 1337
StyI CCWWGG 1 cut(s) 1338
TaaI ACNGT 7 cut(s) 329, 527, 821, 845, 910, 1211, 1220
TaqI TCGA 5 cut(s) 163, 180, 601, 651, 933
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 3 cut(s) 230, 408, 553
TscAI CASTG 4 cut(s) 348, 1130, 1261, 1375
TseFI GTSAC 5 cut(s) 305, 343, 517, 904, 1153
TseI GCWGC 1 cut(s) 444
Tsp45I GTSAC 5 cut(s) 305, 343, 517, 904, 1153
TspDTI ATGAA 3 cut(s) 358, 439, 1340
TspGWI ACGGA 3 cut(s) 458, 563, 1365
TspRI CASTG 4 cut(s) 348, 1130, 1261, 1375
Van91I CCANNNNNTGG 1 cut(s) 1106
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 167, 761
XapI RAATTY 3 cut(s) 134, 464, 1135
XcmI CCANNNNNNNNNTGG 1 cut(s) 1103
XhoI CTCGAG 2 cut(s) 162, 932
XmnI GAANNNNTTC 2 cut(s) 552, 927
XspI CTAG 2 cut(s) 333, 1355
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.