Rw2G027910

proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000819
Physical Location & Seq
Reverse (-)
44433768 .. 44433995
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027910.1

Sequence Viewer

Length: 228 bp
ATGGCGGCGACGGAGCCCAAGGCAGTGACTGAGGTCGCCAAGATGGACCTGTTCGAAGACGATGACGAGTTCGAAGAGTTTGAAATCAATGAAGAATGGGAGGACAAAGAGGAAGGCAAGGAAGTGACACAACAGTGGGAGTATGACTGGGATGATGATGACGTTAATGATGACTTCTCTCTGCAGCTGGGGAGGGAACTGGAAAACAACACTGAGAAGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

75

Amino Acids

9.0

Weight (kDa)

4.05

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSS1_SEM1 PF05160 12 - 69 2.8e-16 DSS1/SEM1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 83
AleI CACNNNNGTG 1 cut(s) 133
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 46
AsuII TTCGAA 2 cut(s) 54, 72
AvaII GGWCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 6, 185
BlsI GCNGC 2 cut(s) 7, 186
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 2 cut(s) 54, 72
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 152, 204
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 21, 204
BseNI ACTGG 2 cut(s) 152, 204
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 187
Bsp119I TTCGAA 2 cut(s) 54, 72
Bsp1286I GDGCHC 1 cut(s) 18
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 22, 205
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 186
BspT104I TTCGAA 2 cut(s) 54, 72
BsrI ACTGG 2 cut(s) 152, 204
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 69
BstBI TTCGAA 2 cut(s) 54, 72
BstDEI CTNAG 2 cut(s) 30, 213
BstF5I GGATG 1 cut(s) 157
BstPAI GACNNNNGTC 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 3 cut(s) 30, 140, 210
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 46
CviJI RGCY 2 cut(s) 16, 187
CviKI_1 RGCY 2 cut(s) 16, 187
DdeI CTNAG 2 cut(s) 30, 213
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaiI YATR 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 6, 185
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 6, 185
GluI GCNGC 2 cut(s) 6, 185
GsaI CCCAGC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 30, 213
HpySE526I ACGT 1 cut(s) 162
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 62, 133, 173, 185
Lsp1109I GCAGC 1 cut(s) 196
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 25, 124
MboII GAAGA 3 cut(s) 68, 86, 104
MhlI GDGCHC 1 cut(s) 18
MnlI CCTC 4 cut(s) 25, 94, 103, 186
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 25, 124
NspV TTCGAA 2 cut(s) 54, 72
OliI CACNNNNGTG 1 cut(s) 133
PkrI GCNGC 2 cut(s) 7, 186
PshAI GACNNNNGTC 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 6, 185
Sau96I GGNCC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 36, 51, 165, 189
SfcI CTRYAG 1 cut(s) 182
SfuI TTCGAA 2 cut(s) 54, 72
SgeI CNNG 8 cut(s) 31, 52, 61, 79, 130, 160, 200, 212
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 133
SsiI CCGC 1 cut(s) 5
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 54, 72
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 3 cut(s) 30, 140, 217
TseFI GTSAC 2 cut(s) 25, 124
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 25, 124
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 3 cut(s) 30, 140, 217
VpaK11BI GGWCC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.