Rmu_sc0010716.1_g000004

26S proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010716.1
OG0000819
Physical Location & Seq
Reverse (-)
12936 .. 15131
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010716.1_g000004.1.cds

Sequence Viewer

Length: 261 bp
atgaatcaaagtccttcacttttcttgaatagcttttttgaaatggagaaggatcagaaggtagcaactgaagaccccaaggtggatttgttcgaggacgatgacgagtttgaagagtttaacatcaatcaagagtgggacgagaaagaagaaggaaaagaagcactgcagcaatgggaggatgattgggatgatgatgatgtcaatgacgacttctctgtgcagctgaagaaagaactggagagcaacaccgggaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

86

Amino Acids

10.29

Weight (kDa)

4.05

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 90, 248
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 3 cut(s) 28, 41, 113
AluBI AGCT 2 cut(s) 33, 226
AluI AGCT 2 cut(s) 33, 226
AlwI GGATC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 169, 223
AsuC2I CCSGG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 181, 235
BcnI CCSGG 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 167
BisI GCNGC 2 cut(s) 170, 224
BlsI GCNGC 2 cut(s) 171, 225
Bme1390I CCNGG 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 187, 196
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 181, 235
BsgI GTGCAG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 171
BspPI GGATC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 179
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 108
BstF5I GGATG 2 cut(s) 187, 196
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 181, 235
BstV2I GAAGAC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 187, 196
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
CviJI RGCY 2 cut(s) 33, 226
CviKI_1 RGCY 2 cut(s) 33, 226
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 90, 248
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaqI GGGAC 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 170, 224
FokI GGATG 2 cut(s) 194, 203
Fsp4HI GCNGC 2 cut(s) 170, 224
GluI GCNGC 2 cut(s) 170, 224
GsuI CTGGAG 1 cut(s) 260
HapII CCGG 1 cut(s) 252
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 2 cut(s) 25, 131
HpyAV CCTTC 4 cut(s) 24, 43, 52, 146
HpyCH4V TGCA 2 cut(s) 169, 223
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 1 cut(s) 224
Lsp1109I GCAGC 2 cut(s) 181, 235
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 4 cut(s) 83, 125, 161, 241
MnlI CCTC 2 cut(s) 88, 172
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 253
NciI CCSGG 1 cut(s) 253
NdeII GATC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 171, 225
PstI CTGCAG 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 226
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 170, 224
Sau3AI GATC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 253
SetI ASST 4 cut(s) 35, 63, 84, 228
SfcI CTRYAG 1 cut(s) 167
SgeI CNNG 7 cut(s) 37, 91, 106, 118, 143, 154, 251
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 1 cut(s) 93
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 171
TseI GCWGC 2 cut(s) 169, 223
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.