Rorug01G0046300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000819
Physical Location & Seq
Reverse (-)
7780196 .. 7780629
434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0046300.1

Sequence Viewer

Length: 381 bp
ATGTACTTCAAATGCGGCGATGAGGGCGATGCACGCAAGGTGTTTGATAAAATGTTTGTGAGGAATTTGTACTCGTGGAACAATATGCTATCTGGGAATGCGAAGATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGAGAAAATGCCTGAGAGGGATGTGGTGTCCTGGAACACCATGAGAGTTGCGGAGATCGTCGGTTGCTGGTGTTTTGACTCTGTGTGTGAAGATGAGGGAATGGGAGCTTATTACTTTATTAGGCAGGCTCATGGGCAGGTTTTGGTTGCTGGGTTTTTGTCGAATGTGGTGCTTTCGAGTGCAGTGGTGGATGCTTATGCCAAGTGTGGGGAGATGGCGGATGCCAGGAGATTGTTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

126

Amino Acids

14.39

Weight (kDa)

5.87

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 24 - 53 5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 265
AciI CCGC 3 cut(s) 15, 188, 356
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 2 cut(s) 5, 71
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 2 cut(s) 167, 362
AluBI AGCT 2 cut(s) 132, 245
AluI AGCT 2 cut(s) 132, 245
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 375
BauI CACGAG 1 cut(s) 73
BccI CCATC 1 cut(s) 346
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 2 cut(s) 169, 364
BcnI CCSGG 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 3 cut(s) 127, 169, 364
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 127, 169, 364
BmsI GCATC 3 cut(s) 19, 319, 349
Bpu14I TTCGAA 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 169, 364
BseGI GGATG 3 cut(s) 163, 334, 364
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 345
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 375
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 3 cut(s) 15, 188, 356
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 375
BssMI GATC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 169, 364
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 34, 264
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 163, 334, 364
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 24, 33
BstNI CCWGG 2 cut(s) 169, 364
BstSCI CCNGG 3 cut(s) 125, 167, 362
BsuRI GGCC 1 cut(s) 125
BtgZI GCGATG 2 cut(s) 33, 42
BtsCI GGATG 3 cut(s) 163, 334, 364
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 34, 264
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 4, 70
CviAII CATG 2 cut(s) 178, 269
CviJI RGCY 4 cut(s) 125, 132, 245, 266
CviKI_1 RGCY 4 cut(s) 125, 132, 245, 266
CviQI GTAC 2 cut(s) 4, 70
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 167, 362
FaeI CATG 2 cut(s) 181, 272
FaiI YATR 4 cut(s) 86, 179, 270, 336
FatI CATG 2 cut(s) 177, 268
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 3 cut(s) 170, 341, 371
Fsp4HI GCNGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 16
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 127
Hin1II CATG 2 cut(s) 181, 272
HinfI GANTC 2 cut(s) 112, 215
HpaII CCGG 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 117
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 32, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 33
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 181, 272
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 129, 242
LweI GCATC 3 cut(s) 19, 319, 349
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 115, 239
MluCI AATT 1 cut(s) 64
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 6 cut(s) 16, 54, 102, 115, 147, 226
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 3 cut(s) 127, 169, 364
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 2 cut(s) 169, 364
MwoI GCNNNNNNNGC 2 cut(s) 24, 33
NciI CCSGG 1 cut(s) 127
NdeII GATC 1 cut(s) 192
NlaIII CATG 2 cut(s) 181, 272
NspV TTCGAA 1 cut(s) 375
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 167, 362
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 167, 362
PspPI GGNCC 1 cut(s) 124
RsaI GTAC 2 cut(s) 5, 71
RsaNI GTAC 2 cut(s) 4, 70
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 127, 169, 364
SetI ASST 4 cut(s) 42, 134, 247, 279
SfaNI GCATC 3 cut(s) 19, 319, 349
SfuI TTCGAA 1 cut(s) 375
Sse9I AATT 1 cut(s) 64
SsiI CCGC 3 cut(s) 15, 188, 356
StyD4I CCNGG 3 cut(s) 125, 167, 362
TaqI TCGA 3 cut(s) 299, 314, 375
TasI AATT 1 cut(s) 64
TatI WGTACW 2 cut(s) 3, 69
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 112
TscAI CASTG 1 cut(s) 327
TspRI CASTG 1 cut(s) 327
XapI RAATTY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.