Rroxscaffold_3G00261800

proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000819
Physical Location & Seq
Forward (+)
55962635 .. 55964511
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261800.1

Sequence Viewer

Length: 228 bp
ATGGCGGCGACGGAGCCCAAGGCAGTGACTGAGGTCGCCAAGATGGACCTGTTCGAAGACGATGACGAGTTCGAAGAGTTTGAAATCAACGAAGAATGGGACGACAAAGAGGAAGGCAAGGAAGTGACACAACAGTGGGAGGATGACTGGGATGATGATGACGTTAATGATGACTTCTCTCTCCAGCTGAGGAGGGAATTGGAAAACAACACTGAGAAGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

75

Amino Acids

9.03

Weight (kDa)

4.05

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSS1_SEM1 PF05160 12 - 69 3.1e-18 DSS1/SEM1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 83
AleI CACNNNNGTG 1 cut(s) 133
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 46
AsuII TTCGAA 2 cut(s) 54, 72
AvaII GGWCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 37
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 188
Bpu14I TTCGAA 2 cut(s) 54, 72
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 148, 157
BseMII CTCAG 3 cut(s) 21, 179, 204
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
Bsp119I TTCGAA 2 cut(s) 54, 72
Bsp1286I GDGCHC 1 cut(s) 18
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 22, 180, 205
BspLI GGNNCC 1 cut(s) 15
BspT104I TTCGAA 2 cut(s) 54, 72
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 69
BstBI TTCGAA 2 cut(s) 54, 72
BstDEI CTNAG 3 cut(s) 30, 188, 213
BstF5I GGATG 2 cut(s) 148, 157
BstPAI GACNNNNGTC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 2 cut(s) 148, 157
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 3 cut(s) 30, 140, 210
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 46
CviJI RGCY 2 cut(s) 16, 187
CviKI_1 RGCY 2 cut(s) 16, 187
DdeI CTNAG 3 cut(s) 30, 188, 213
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaqI GGGAC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 155, 164
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 162
HpyF3I CTNAG 3 cut(s) 30, 188, 213
HpySE526I ACGT 1 cut(s) 162
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 62, 133, 197
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 25, 124
MboII GAAGA 3 cut(s) 68, 86, 104
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 197
MnlI CCTC 5 cut(s) 25, 103, 133, 183, 186
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 25, 124
NspV TTCGAA 2 cut(s) 54, 72
OliI CACNNNNGTG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 7
PshAI GACNNNNGTC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 36, 51, 165, 189
SfuI TTCGAA 2 cut(s) 54, 72
SgeI CNNG 7 cut(s) 31, 52, 61, 79, 130, 160, 196
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 133
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 5
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 54, 72
TasI AATT 1 cut(s) 197
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 3 cut(s) 30, 140, 217
TseFI GTSAC 2 cut(s) 25, 124
Tsp45I GTSAC 2 cut(s) 25, 124
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 3 cut(s) 30, 140, 217
VpaK11BI GGWCC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.