Rw4G015770

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000819
Physical Location & Seq
Forward (+)
36126769 .. 36129191
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015770.1

Sequence Viewer

Length: 327 bp
ATGAGATTTCAAACCACTAACCTCTCTATTTTGATCAGTATCAGAAACTTTCTTTTGGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACGTTATGCTTTCTTGAGCAGGTTGATCACCTCATTGGCAAACATCATCTCTTTAAACGTAGTATCATACTGATTAAGGCATGCTGCTATTGTGAGAGTCGAATTCTTGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGTGACCTTAGTTCTTTTTATCTACGTGTCATTGTTTCAGGTGAAAGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.24

Weight (kDa)

9.04

Isoelectric Point (pI)

23.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 55 - 100 5.8e-21 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 231
AfaI GTAC 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 11, 109
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 149, 286, 325
BaeGI GKGCMC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 252
BclI TGATCA 2 cut(s) 33, 154
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 200
BshNI GGYRCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 33, 154
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 239
BssMI GATC 2 cut(s) 33, 154
Bst4CI ACNGT 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 280
BstEII GGTNACC 1 cut(s) 274
BstKTI GATC 2 cut(s) 36, 157
BstMBI GATC 2 cut(s) 33, 154
BstNSI RCATGY 1 cut(s) 213
BstPI GGTNACC 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 200
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 210
CviJI RGCY 2 cut(s) 64, 124
CviKI_1 RGCY 2 cut(s) 64, 124
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 280
DpnI GATC 2 cut(s) 35, 156
DpnII GATC 2 cut(s) 33, 154
DraI TTTAAA 1 cut(s) 184
Eco32I GATATC 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 231
EcoRV GATATC 1 cut(s) 258
FaeI CATG 1 cut(s) 213
FaiI YATR 7 cut(s) 101, 127, 136, 197, 211, 265, 267
FatI CATG 1 cut(s) 209
FauNDI CATATG 1 cut(s) 265
FbaI TGATCA 2 cut(s) 33, 154
Fnu4HI GCNGC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 226
HphI GGTGA 3 cut(s) 149, 286, 325
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 3 cut(s) 131, 187, 297
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 280
HpySE526I ACGT 3 cut(s) 131, 187, 297
Hsp92II CATG 1 cut(s) 213
Ksp22I TGATCA 2 cut(s) 33, 154
Kzo9I GATC 2 cut(s) 33, 154
LpnPI CCDG 2 cut(s) 134, 296
Lsp1109I GCAGC 1 cut(s) 200
MaeII ACGT 3 cut(s) 131, 187, 297
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 35, 156
MboI GATC 2 cut(s) 33, 154
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 231
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 3 cut(s) 32, 113, 170
MseI TTAA 3 cut(s) 60, 183, 204
NdeI CATATG 1 cut(s) 265
NdeII GATC 2 cut(s) 33, 154
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 213
PaeI GCATGC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 241
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 3 cut(s) 60, 183, 204
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 2 cut(s) 33, 154
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 244
SetI ASST 9 cut(s) 24, 66, 134, 153, 162, 190, 281, 300, 315
SgeI CNNG 9 cut(s) 77, 89, 155, 161, 222, 248, 260, 310, 323
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 213
Sse9I AATT 1 cut(s) 231
SspI AATATT 1 cut(s) 88
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 3 cut(s) 134, 190, 300
TaqI TCGA 1 cut(s) 229
TasI AATT 1 cut(s) 231
Tru1I TTAA 3 cut(s) 60, 183, 204
Tru9I TTAA 3 cut(s) 60, 183, 204
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 274
XapI RAATTY 1 cut(s) 231
XceI RCATGY 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.