Rh4AG144500

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000819
Physical Location & Seq
Reverse (-)
36568581 .. 36584173
15593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG144500.1

Sequence Viewer

Length: 495 bp
ATGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTAGCTTCTGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTTTTCCAACTGATTGTGCTGTATGCACAGGAACCATTGATAGTATAGCAGCTTTTTTAGCCGCTCGTGCAACACAACCTGGGAAAGCTGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAATTAGGAGGGCTATGTACGTTATGCTTTCTTGAGCAGGTTGATTGCCTCATTGGCAAACATCATCTCTTTAAACGTAGTATCATACTGATTAAGGCATGGTGCTATTGTGAGAGTCGAATTCTTGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGTGACCTTAGTTCTTTTTATCTACGTGTCATTGGTTCAGGTGAAAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.94

Weight (kDa)

6.93

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 111 - 155 2.3e-22 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 407
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 399
AfaI GTAC 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 4 cut(s) 26, 99, 112, 277
AjnI CCWGG 3 cut(s) 38, 88, 214
AluBI AGCT 6 cut(s) 22, 74, 86, 188, 224, 232
AluI AGCT 6 cut(s) 22, 74, 86, 188, 224, 232
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 399
AsuHPI GGTGA 2 cut(s) 454, 493
BaeGI GKGCMC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 420
BciT130I CCWGG 3 cut(s) 40, 90, 216
BfuAI ACCTGC 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 333
BisI GCNGC 2 cut(s) 186, 198
BlsI GCNGC 2 cut(s) 187, 199
Bme1390I CCNGG 3 cut(s) 40, 90, 216
BmiI GGNNCC 2 cut(s) 169, 409
BmrFI CCNGG 3 cut(s) 40, 90, 216
Bpu10I CCTNAGC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 466
BsaJI CCNNGG 2 cut(s) 38, 215
BseBI CCWGG 3 cut(s) 40, 90, 216
BseDI CCNNGG 2 cut(s) 38, 215
BseMII CTCAG 2 cut(s) 9, 65
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 88, 412
Bsp143I GATC 2 cut(s) 13, 125
BspACI CCGC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 10, 64
BspLI GGNNCC 2 cut(s) 169, 409
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 38, 215
BssMI GATC 2 cut(s) 13, 125
BssSI CACGAG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 201
Bst2UI CCWGG 3 cut(s) 40, 90, 216
Bst4CI ACNGT 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 18, 51, 448
BstEII GGTNACC 1 cut(s) 442
BstKTI GATC 2 cut(s) 16, 128
BstMBI GATC 2 cut(s) 13, 125
BstMWI GCNNNNNNNGC 3 cut(s) 194, 203, 333
BstNI CCWGG 3 cut(s) 40, 90, 216
BstPI GGTNACC 1 cut(s) 442
BstSCI CCNGG 3 cut(s) 38, 88, 214
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 197
BveI ACCTGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 378
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 3 cut(s) 18, 51, 448
DpnI GATC 2 cut(s) 15, 127
DpnII GATC 2 cut(s) 13, 125
DraI TTTAAA 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 426
Eco53kI GAGCTC 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 3 cut(s) 38, 88, 214
EcoRV GATATC 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 1 cut(s) 381
FatI CATG 1 cut(s) 377
FauNDI CATATG 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 186, 198
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 186, 198
GluI GCNGC 2 cut(s) 186, 198
Hin1II CATG 1 cut(s) 381
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 26, 394
HphI GGTGA 2 cut(s) 454, 493
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 17, 311
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 3 cut(s) 299, 355, 465
HpyCH4V TGCA 3 cut(s) 162, 206, 250
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 203, 333
HpyF3I CTNAG 3 cut(s) 18, 51, 448
HpySE526I ACGT 3 cut(s) 299, 355, 465
Hsp92II CATG 1 cut(s) 381
Kzo9I GATC 2 cut(s) 13, 125
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 1 cut(s) 197
MaeII ACGT 3 cut(s) 299, 355, 465
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 15, 127
MbiI CCGCTC 1 cut(s) 200
MboI GATC 2 cut(s) 13, 125
MhlI GDGCHC 2 cut(s) 88, 412
MluCI AATT 2 cut(s) 281, 399
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 3 cut(s) 109, 281, 338
MseI TTAA 3 cut(s) 228, 351, 372
MspR9I CCNGG 3 cut(s) 40, 90, 216
MvaI CCWGG 3 cut(s) 40, 90, 216
MwoI GCNNNNNNNGC 3 cut(s) 194, 203, 333
NdeI CATATG 1 cut(s) 433
NdeII GATC 2 cut(s) 13, 125
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 2 cut(s) 169, 409
NmuCI GTSAC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 88
PkrI GCNGC 2 cut(s) 187, 199
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
Ppu21I YACGTR 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 88
Psp6I CCWGG 3 cut(s) 38, 88, 214
PspEI GGTNACC 1 cut(s) 442
PspGI CCWGG 3 cut(s) 38, 88, 214
PspN4I GGNNCC 2 cut(s) 169, 409
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 3 cut(s) 228, 351, 372
SatI GCNGC 2 cut(s) 186, 198
Sau3AI GATC 2 cut(s) 13, 125
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 3 cut(s) 40, 90, 216
SduI GDGCHC 2 cut(s) 88, 412
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 2 cut(s) 281, 399
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 256
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 3 cut(s) 38, 88, 214
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 3 cut(s) 302, 358, 468
TaqI TCGA 1 cut(s) 397
TaqII GACCGA 1 cut(s) 92
TasI AATT 2 cut(s) 281, 399
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 228, 351, 372
Tru9I TTAA 3 cut(s) 228, 351, 372
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 442
XapI RAATTY 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.