Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Forward (+)

84693221 .. 84694627

Gene Structure 1407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAGAAGGATCAGAAGGTAGCAACTGAAGACCCCAAGGTGGATTTGTTCGAGGACGATGACGAGTTTGAAGAGTTTAACATCAATCAAGAGTGGGACGAGAAAGAAGAAGGAAAAGAAGCACTGCAGCAATGGGAGGATGATTGGGATGATGATGATGTCAATGACGACTTCTCTGTGCAGCTGAAGAAAGAACTGGAGAGCAACACCGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko03440 ko05169 map03050 map03440 map05169

Pfam Domains

Protein Families

DSS1_SEM1

Protein Analysis

72

Amino Acids

8.64

Weight (kDa)

4.05

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSS1_SEM1	PF05160	10 - 67	5e-18	DSS1/SEM1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	48, 206
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwI	GGATC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	127, 181
AsuC2I	CCSGG	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	139, 193
BcnI	CCSGG	1 cut(s)	211
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	128, 182
BlsI	GCNGC	2 cut(s)	129, 183
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	145, 154
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	139, 193
BsgI	GTGCAG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	145, 154
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	139, 193
BstV2I	GAAGAC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	145, 154
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
CviJI	RGCY	1 cut(s)	184
CviKI_1	RGCY	1 cut(s)	184
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	48, 206
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	128, 182
FokI	GGATG	2 cut(s)	152, 161
Fsp4HI	GCNGC	2 cut(s)	128, 182
GluI	GCNGC	2 cut(s)	128, 182
GsuI	CTGGAG	1 cut(s)	218
HapII	CCGG	1 cut(s)	210
HpaII	CCGG	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	10, 104
HpyCH4V	TGCA	2 cut(s)	127, 181
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	1 cut(s)	182
Lsp1109I	GCAGC	2 cut(s)	139, 193
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	4 cut(s)	41, 83, 119, 199
MnlI	CCTC	2 cut(s)	46, 130
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	211
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	129, 183
PstI	CTGCAG	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	128, 182
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	3 cut(s)	21, 42, 186
SfcI	CTRYAG	1 cut(s)	125
SgeI	CNNG	6 cut(s)	49, 64, 76, 101, 112, 209
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	2 cut(s)	127, 181
TspRI	CASTG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.