Rh1CG011100

26S proteasome complex subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
1690388 .. 1695360
4973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG011100.1

Sequence Viewer

Length: 312 bp
ATGGAGAAGGATCAGAAGGTAGCATCTGAAGACCCCAAGGTGGATATGTTCGAGGACGATGACGAGTTTGAAGAGTTCAACATCAATCTAGGTGTTCCCGTTTGGATCAGTACCTCTGAAGACGTATCTGCCGGATGGAGTGCTGTTCTTGAAAGGGAAGATCACAATATGGCTGCTGAGTTTATGGTGAAGGACGTGCAGTTAATTCGGGCAAAGAACAAATGGGGGACTCTGAGATTTCAAACCACTAACCTCTCTATTTTGATCAGTATCAGAAACTTTCTTTTGGTAAGAACACCTACTTTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.9

Weight (kDa)

4.51

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 18, 113
AcuI CTGAAG 2 cut(s) 48, 138
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 4 cut(s) 71, 79, 152, 242
AjiI CACGTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 18, 113
ApeKI GCWGC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 199
BbsI GAAGAC 2 cut(s) 36, 126
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BclI TGATCA 1 cut(s) 264
BfaI CTAG 1 cut(s) 89
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 196
BmsI GCATC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 36, 126
BsaBI GATNNNNATC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 140
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 168, 224
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 10, 105, 160, 264
BspCNI CTCAG 2 cut(s) 169, 225
BspPI GGATC 2 cut(s) 18, 113
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 4 cut(s) 10, 105, 160, 264
BssT1I CCWWGG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 177, 233
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 4 cut(s) 13, 108, 163, 267
BstMBI GATC 4 cut(s) 10, 105, 160, 264
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 2 cut(s) 36, 126
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 140
Csp6I GTAC 1 cut(s) 111
CviJI RGCY 1 cut(s) 173
CviKI_1 RGCY 1 cut(s) 173
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 2 cut(s) 177, 233
DpnI GATC 4 cut(s) 12, 107, 162, 266
DpnII GATC 4 cut(s) 10, 105, 160, 264
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 48, 138
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 3 cut(s) 47, 170, 185
FaqI GGGAC 1 cut(s) 241
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 174
HapII CCGG 1 cut(s) 132
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 5 cut(s) 15, 28, 118, 234, 275
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 10, 184
HpyCH4IV ACGT 2 cut(s) 123, 195
HpyCH4V TGCA 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 177, 233
HpySE526I ACGT 2 cut(s) 123, 195
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 4 cut(s) 10, 105, 160, 264
LpnPI CCDG 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 89
MaeII ACGT 2 cut(s) 123, 195
MalI GATC 4 cut(s) 12, 107, 162, 266
MboI GATC 4 cut(s) 10, 105, 160, 264
MboII GAAGA 4 cut(s) 41, 83, 131, 170
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 3 cut(s) 46, 124, 263
MseI TTAA 2 cut(s) 203, 310
MspI CCGG 1 cut(s) 132
NdeII GATC 4 cut(s) 10, 105, 160, 264
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 203, 310
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 4 cut(s) 10, 105, 160, 264
SchI GAGTC 1 cut(s) 223
SetI ASST 8 cut(s) 21, 42, 94, 116, 126, 198, 255, 301
SfaNI GCATC 1 cut(s) 32
SgeI CNNG 9 cut(s) 49, 64, 76, 101, 110, 144, 161, 208, 221
Sse9I AATT 1 cut(s) 204
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 36
TaiI ACGT 2 cut(s) 126, 198
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 204
Tru1I TTAA 2 cut(s) 203, 310
Tru9I TTAA 2 cut(s) 203, 310
TseI GCWGC 1 cut(s) 173
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.