pycom14g15210

proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000819
Physical Location & Seq
Reverse (-)
17903502 .. 17904566
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g15210.4

Sequence Viewer

Length: 312 bp
ATGGGCCTACCCTCAAATCTAATCTCACTTCGTTCTCAGCTTCTCCAATCTCTCTTTCTCTGTGTGTGCGCTTTGAGGATCGATATGGCGGCGGAGCCCCAGGCGGTGACGGAGGTAGCGAAGATGGATCTATTCGAAGACGACGACGAGTTCGAAGAGTTTGATATCAACGAAGAATGGGAGGACCAAGAGGAAGGCAAAGAAGTGACACAGCAGTGGGAAGACGACTGGGATGATGATGATGTTAACGATGACTTCTCTCTGCAGCTGAGGAGGGAACTTGAGAACAATACTGAGAAGAGCTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

104

Amino Acids

12.02

Weight (kDa)

4.05

Isoelectric Point (pI)

68.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 89, 92, 104
AclWI GGATC 2 cut(s) 86, 135
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 4 cut(s) 40, 268, 303, 308
AluI AGCT 4 cut(s) 40, 268, 303, 308
Alw21I GWGCWC 1 cut(s) 305
AlwI GGATC 2 cut(s) 86, 135
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 265
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 4, 184
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 2 cut(s) 135, 153
AvaII GGWCC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 99, 305
BbsI GAAGAC 2 cut(s) 144, 228
Bbv12I GWGCWC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 263
BisI GCNGC 2 cut(s) 90, 266
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 2 cut(s) 91, 267
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 4, 184
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 144, 228
BplI GAGNNNNNCTC 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 304
Bpu14I TTCGAA 2 cut(s) 135, 153
BpuEI CTTGAG 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 50, 260, 285
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 6
BshVI ATCGAT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 305
BsnI GGCC 1 cut(s) 6
Bsp119I TTCGAA 2 cut(s) 135, 153
Bsp1286I GDGCHC 2 cut(s) 99, 305
Bsp143I GATC 2 cut(s) 78, 127
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 3 cut(s) 89, 92, 104
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 3 cut(s) 49, 261, 286
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 2 cut(s) 86, 135
BspQI GCTCTTC 1 cut(s) 293
BspT104I TTCGAA 2 cut(s) 135, 153
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 78, 127
Bst2UI CCWGG 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 150, 293
BstBI TTCGAA 2 cut(s) 135, 153
BstDEI CTNAG 5 cut(s) 36, 269, 294, 304, 309
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 81, 130
BstMBI GATC 2 cut(s) 78, 127
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 2 cut(s) 144, 228
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 4, 184
ClaI ATCGAT 1 cut(s) 81
CviJI RGCY 6 cut(s) 6, 40, 97, 268, 303, 308
CviKI_1 RGCY 6 cut(s) 6, 40, 97, 268, 303, 308
DdeI CTNAG 5 cut(s) 36, 269, 294, 304, 309
DpnI GATC 2 cut(s) 80, 129
DpnII GATC 2 cut(s) 78, 127
Eam1104I CTCTTC 2 cut(s) 150, 293
EarI CTCTTC 2 cut(s) 150, 293
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 99, 305
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 166
EcoT38I GRGCYC 2 cut(s) 99, 305
FaiI YATR 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 90, 266
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 2 cut(s) 99, 305
Fsp4HI GCNGC 2 cut(s) 90, 266
GlaI GCGC 1 cut(s) 70
GluI GCNGC 2 cut(s) 90, 266
HaeIII GGCC 1 cut(s) 6
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HpaI GTTAAC 1 cut(s) 247
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 146, 149
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 265
HpyF3I CTNAG 5 cut(s) 36, 269, 294, 304, 309
HspAI GCGC 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 78, 127
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 86, 113, 214
Lsp1109I GCAGC 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 106, 205
MalI GATC 2 cut(s) 80, 129
MboI GATC 2 cut(s) 78, 127
MboII GAAGA 6 cut(s) 133, 149, 167, 185, 233, 310
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 99, 305
MnlI CCTC 7 cut(s) 22, 69, 106, 175, 184, 264, 267
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
NdeII GATC 2 cut(s) 78, 127
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 106, 205
NspV TTCGAA 2 cut(s) 135, 153
OliI CACNNNNGTG 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 3 cut(s) 116, 141, 150
PkrI GCNGC 2 cut(s) 91, 267
Psp124BI GAGCTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 4, 184
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 214
SacI GAGCTC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 90, 266
Sau3AI GATC 2 cut(s) 78, 127
Sau96I GGNCC 2 cut(s) 4, 184
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 2 cut(s) 99, 305
SetI ASST 5 cut(s) 42, 117, 270, 305, 310
SfcI CTRYAG 1 cut(s) 263
SfuI TTCGAA 2 cut(s) 135, 153
SgeI CNNG 6 cut(s) 112, 113, 160, 200, 241, 293
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SsiI CCGC 3 cut(s) 89, 92, 104
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 99
TaqI TCGA 3 cut(s) 81, 135, 153
TauI GCSGC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 2 cut(s) 106, 205
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 2 cut(s) 106, 205
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.