Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Reverse (-)

67997476 .. 67998456

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0552700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGTGTTAGCAACATATAATGACTTGGTTTTGTGTCGGGATCTTAATGTTGATGTTGATGATGATGCTCCCTTAAAAAAAGCGTATGAGTATTACTACATCTGCAATCCATACACATTTCAATGTGTTGCTCTCCCACGACCTCTTCGCGCCCATGATCGGTACGGTCACGTGACTGTTGGATTCATATGTGATCTTGACAATTCTGGGAGTAGGTGCAAAGTTGTGAGATTTCATCCAAAAGATAAAAAAAATTCCTCCAAATTAGAAGTGGAAATCTTTTCCTCCGAAACTGGTGAATGGAGAACGTCAATTATCTCATTCAGACAGAAAGTATCTTCTTGTCATATCTATACTACCTATCCTTACAATGGAATGTTGTATTATTGGAACACTGACTACAACAATTTCGTTGGGTTTGATCCTTTCAAGATCAACAGTAGTAGGGATGGTGATGATACTATTGAACCTTATAAAGGTCGTATCATTGAGTTTGAGTTTGGTGGGGAGAGCTCTAAGATCGCGTGTGTAGGCATGTGCGGAGGCCGTCTAAGATTCATCGGCGGATTCGACTTCATTTCATGTATTCTTCCAGTGTGGGAACTGGAAGAAGAACAAGATGAGAGAGCTCTCGATAGATCTGGCAAATTGTTTTTGAAACACACGACGTATTCACTGGATAGAGAAATGGTTGATACACACCAAGACATAATGAGGTTCTGTGCAGACCGGTTTTTTGATCCGAATGACGAGAATATCTTGTGCATGCTCAAACACGGAGATACTGGTAGTCAATTTTTGAAATACAACATTTGTACAAGAAAGTGGTCAGTGATGTGTCATGCGCCCGATGTCCGAATTTACCATGGTTACATTTTCCCATTGACAGTGCTCCCGTGGTGGCCGACACCGGTTCCTAAATGGCATCACCCCAAAGGTCATGGTGCAGCTCGGAATTTACTAGCCTGGCGTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko03440 ko05169 map03050 map03440 map05169

Pfam Domains

Protein Families

DSS1_SEM1

Protein Analysis

326

Amino Acids

37.97

Weight (kDa)

6.63

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
b-prop_At3g26010-like	PF24750	29 - 206	8.6e-14	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	31 - 132	3.6e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccII	CGCG	2 cut(s)	150, 524
AciI	CCGC	2 cut(s)	540, 564
AclWI	GGATC	3 cut(s)	48, 416, 734
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	3 cut(s)	253, 858, 955
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	164, 817
AfiI	CCNNNNNNNGG	3 cut(s)	159, 371, 476
AgeI	ACCGGT	2 cut(s)	729, 910
AgsI	TTSAA	5 cut(s)	122, 430, 467, 658, 802
AjnI	CCWGG	1 cut(s)	965
AluBI	AGCT	3 cut(s)	513, 629, 950
AluI	AGCT	3 cut(s)	513, 629, 950
Alw21I	GWGCWC	3 cut(s)	515, 631, 894
AlwI	GGATC	3 cut(s)	48, 416, 734
AoxI	GGCC	2 cut(s)	544, 902
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	3 cut(s)	253, 858, 955
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
AsiGI	ACCGGT	2 cut(s)	729, 910
AspLEI	GCGC	2 cut(s)	152, 847
AsuHPI	GGTGA	3 cut(s)	308, 464, 920
BanII	GRGCYC	2 cut(s)	515, 631
BbrPI	CACGTG	1 cut(s)	172
Bbv12I	GWGCWC	3 cut(s)	515, 631, 894
BbvI	GCAGC	1 cut(s)	959
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	967
BfaI	CTAG	1 cut(s)	962
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	1 cut(s)	948
BlsI	GCNGC	1 cut(s)	949
Bme1390I	CCNGG	1 cut(s)	967
BmiI	GGNNCC	1 cut(s)	915
BmrFI	CCNGG	1 cut(s)	967
BmsI	GCATC	2 cut(s)	55, 934
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	865, 896
BsaWI	WCCGGW	2 cut(s)	729, 910
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 371, 476
Bse118I	RCCGGY	2 cut(s)	729, 910
Bse1I	ACTGG	5 cut(s)	298, 593, 609, 681, 790
BseBI	CCWGG	1 cut(s)	967
BseDI	CCNNGG	2 cut(s)	865, 896
BseGI	GGATG	2 cut(s)	235, 454
BseLI	CCNNNNNNNGG	3 cut(s)	159, 371, 476
BseNI	ACTGG	5 cut(s)	298, 593, 609, 681, 790
BseXI	GCAGC	1 cut(s)	959
BsgI	GTGCAG	2 cut(s)	744, 966
Bsh1236I	CGCG	2 cut(s)	150, 524
BshFI	GGCC	2 cut(s)	546, 904
BshTI	ACCGGT	2 cut(s)	729, 910
BsiHKAI	GWGCWC	3 cut(s)	515, 631, 894
BsiSI	CCGG	2 cut(s)	730, 911
BslI	CCNNNNNNNGG	3 cut(s)	159, 371, 476
BsnI	GGCC	2 cut(s)	546, 904
Bsp1286I	GDGCHC	3 cut(s)	515, 631, 894
Bsp1407I	TGTACA	1 cut(s)	815
Bsp143I	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	2 cut(s)	540, 564
BspANI	GGCC	2 cut(s)	546, 904
BspFNI	CGCG	2 cut(s)	150, 524
BspLI	GGNNCC	1 cut(s)	915
BspPI	GGATC	3 cut(s)	48, 416, 734
BsrFI	RCCGGY	2 cut(s)	729, 910
BsrGI	TGTACA	1 cut(s)	815
BsrI	ACTGG	5 cut(s)	298, 593, 609, 681, 790
BssAI	RCCGGY	2 cut(s)	729, 910
BssECI	CCNNGG	2 cut(s)	865, 896
BssMI	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
BssT1I	CCWWGG	1 cut(s)	865
Bst2UI	CCWGG	1 cut(s)	967
Bst4CI	ACNGT	4 cut(s)	167, 178, 440, 889
Bst6I	CTCTTC	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	2 cut(s)	516, 551
BstDSI	CCRYGG	2 cut(s)	865, 896
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	235, 454
BstFNI	CGCG	2 cut(s)	150, 524
BstHHI	GCGC	2 cut(s)	152, 847
BstKTI	GATC	8 cut(s)	43, 160, 196, 424, 435, 522, 641, 742
BstMBI	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
BstNI	CCWGG	1 cut(s)	967
BstNSI	RCATGY	2 cut(s)	538, 769
BstSCI	CCNGG	1 cut(s)	965
BstUI	CGCG	2 cut(s)	150, 524
BstV1I	GCAGC	1 cut(s)	959
BstX2I	RGATCY	2 cut(s)	40, 638
BstYI	RGATCY	2 cut(s)	40, 638
BsuRI	GGCC	2 cut(s)	546, 904
BtgI	CCRYGG	2 cut(s)	865, 896
BtsCI	GGATG	2 cut(s)	235, 454
BtsIMutI	CAGTG	5 cut(s)	393, 600, 674, 837, 894
Cac8I	GCNNGC	1 cut(s)	767
CfoI	GCGC	2 cut(s)	152, 847
Cfr10I	RCCGGY	2 cut(s)	729, 910
Csp6I	GTAC	2 cut(s)	163, 816
CspAI	ACCGGT	2 cut(s)	729, 910
CviAII	CATG	7 cut(s)	155, 535, 582, 766, 842, 866, 941
CviJI	RGCY	6 cut(s)	513, 546, 629, 904, 950, 965
CviKI_1	RGCY	6 cut(s)	513, 546, 629, 904, 950, 965
CviQI	GTAC	2 cut(s)	163, 816
DdeI	CTNAG	2 cut(s)	516, 551
DpnI	GATC	8 cut(s)	42, 159, 195, 423, 434, 521, 640, 741
DpnII	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
EaeI	YGGCCR	1 cut(s)	902
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	579
Ecl136II	GAGCTC	2 cut(s)	513, 629
Eco130I	CCWWGG	1 cut(s)	865
Eco24I	GRGCYC	2 cut(s)	515, 631
Eco53kI	GAGCTC	2 cut(s)	513, 629
Eco72I	CACGTG	1 cut(s)	172
EcoICRI	GAGCTC	2 cut(s)	513, 629
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	965
EcoT14I	CCWWGG	1 cut(s)	865
EcoT38I	GRGCYC	2 cut(s)	515, 631
ErhI	CCWWGG	1 cut(s)	865
FaeI	CATG	7 cut(s)	158, 538, 585, 769, 845, 869, 944
FatI	CATG	7 cut(s)	154, 534, 581, 765, 841, 865, 940
FauNDI	CATATG	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	948
FokI	GGATG	2 cut(s)	222, 461
FriOI	GRGCYC	2 cut(s)	515, 631
Fsp4HI	GCNGC	1 cut(s)	948
FspBI	CTAG	1 cut(s)	962
GlaI	GCGC	2 cut(s)	151, 846
GluI	GCNGC	1 cut(s)	948
HaeIII	GGCC	2 cut(s)	546, 904
HapII	CCGG	2 cut(s)	730, 911
HhaI	GCGC	2 cut(s)	152, 847
Hin1II	CATG	7 cut(s)	158, 538, 585, 769, 845, 869, 944
Hin6I	GCGC	2 cut(s)	150, 845
HinP1I	GCGC	2 cut(s)	150, 845
HinfI	GANTC	3 cut(s)	183, 555, 567
HpaII	CCGG	2 cut(s)	730, 911
HphI	GGTGA	3 cut(s)	308, 464, 920
Hpy188I	TCNGA	5 cut(s)	289, 326, 744, 857, 954
Hpy188III	TCNNGA	4 cut(s)	38, 197, 430, 632
Hpy99I	CGWCG	1 cut(s)	670
HpyCH4III	ACNGT	4 cut(s)	167, 178, 440, 889
HpyCH4IV	ACGT	3 cut(s)	171, 308, 668
HpyCH4V	TGCA	5 cut(s)	105, 219, 725, 765, 947
HpyF3I	CTNAG	2 cut(s)	516, 551
HpySE526I	ACGT	3 cut(s)	171, 308, 668
Hsp92II	CATG	7 cut(s)	158, 538, 585, 769, 845, 869, 944
HspAI	GCGC	2 cut(s)	150, 845
Kzo9I	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
LmnI	GCTCC	2 cut(s)	73, 897
Lsp1109I	GCAGC	1 cut(s)	959
LweI	GCATC	2 cut(s)	55, 934
MaeI	CTAG	1 cut(s)	962
MaeII	ACGT	3 cut(s)	171, 308, 668
MaeIII	GTNAC	3 cut(s)	167, 172, 869
MalI	GATC	8 cut(s)	42, 159, 195, 423, 434, 521, 640, 741
MboI	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
MboII	GAAGA	5 cut(s)	137, 330, 581, 620, 623
MflI	RGATCY	2 cut(s)	40, 638
MhlI	GDGCHC	3 cut(s)	515, 631, 894
MluCI	AATT	9 cut(s)	202, 253, 263, 312, 406, 647, 794, 858, 955
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	153, 268, 295, 536, 708
MseI	TTAA	2 cut(s)	45, 74
MslI	CAYNNNNRTG	1 cut(s)	121
MspI	CCGG	2 cut(s)	730, 911
MspR9I	CCNGG	1 cut(s)	967
MvaI	CCWGG	1 cut(s)	967
MvnI	CGCG	2 cut(s)	150, 524
NcoI	CCATGG	1 cut(s)	865
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
NlaIII	CATG	7 cut(s)	158, 538, 585, 769, 845, 869, 944
NlaIV	GGNNCC	1 cut(s)	915
NmuCI	GTSAC	2 cut(s)	167, 172
NspI	RCATGY	2 cut(s)	538, 769
PaeI	GCATGC	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	183, 555, 567
PinAI	ACCGGT	2 cut(s)	729, 910
PkrI	GCNGC	1 cut(s)	949
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	474
Psp124BI	GAGCTC	2 cut(s)	515, 631
Psp6I	CCWGG	1 cut(s)	965
PspCI	CACGTG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	965
PspN4I	GGNNCC	1 cut(s)	915
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PsuI	RGATCY	2 cut(s)	40, 638
RsaI	GTAC	2 cut(s)	164, 817
RsaNI	GTAC	2 cut(s)	163, 816
RseI	CAYNNNNRTG	1 cut(s)	121
SacI	GAGCTC	2 cut(s)	515, 631
SaqAI	TTAA	2 cut(s)	45, 74
SatI	GCNGC	1 cut(s)	948
Sau3AI	GATC	8 cut(s)	40, 157, 193, 421, 432, 519, 638, 739
ScrFI	CCNGG	1 cut(s)	967
SduI	GDGCHC	3 cut(s)	515, 631, 894
SfaNI	GCATC	2 cut(s)	55, 934
SmiMI	CAYNNNNRTG	1 cut(s)	121
SphI	GCATGC	1 cut(s)	769
Sse9I	AATT	9 cut(s)	202, 253, 263, 312, 406, 647, 794, 858, 955
SsiI	CCGC	2 cut(s)	540, 564
SspMI	CTAG	1 cut(s)	962
SstI	GAGCTC	2 cut(s)	515, 631
StyD4I	CCNGG	1 cut(s)	965
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	4 cut(s)	167, 178, 440, 889
TaiI	ACGT	3 cut(s)	174, 311, 671
TaqI	TCGA	2 cut(s)	570, 633
TasI	AATT	9 cut(s)	202, 253, 263, 312, 406, 647, 794, 858, 955
TatI	WGTACW	1 cut(s)	815
TfiI	GAWTC	3 cut(s)	183, 555, 567
Tru1I	TTAA	2 cut(s)	45, 74
Tru9I	TTAA	2 cut(s)	45, 74
TscAI	CASTG	5 cut(s)	400, 600, 681, 837, 894
TseFI	GTSAC	2 cut(s)	167, 172
TseI	GCWGC	1 cut(s)	947
Tsp45I	GTSAC	2 cut(s)	167, 172
TspDTI	ATGAA	5 cut(s)	175, 224, 547, 565, 570
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	5 cut(s)	400, 600, 681, 837, 894
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	3 cut(s)	253, 858, 955
XceI	RCATGY	2 cut(s)	538, 769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.