Rmu_sc0002806.1_g000028

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002806.1
OG0000819
Physical Location & Seq
Forward (+)
143832 .. 146913
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002806.1_g000028.1.cds

Sequence Viewer

Length: 438 bp
atgattgtagatatatccttcaatcagttaggaggactttgtacactatgctttcttgaacaggttgatcactatattggcaaagatcatattttcaaacgcagcattattctgataaaagcctggtgctactatgagagtcgtattcttggtgctcatcatggtttaatttcaacatatgctttggaaacattagtcctatatatattccatctttttcattcttctctagatgggcctttaacgcctgctcccgtcacaatctcatcgccgggatcacggttgatcctcagcgccatcaacaccggcaccgcctccgatctccgcgactacgccctcgatttgaacgtcaccaatttcaatgcggtgcggatgcctagaggtcgcttggaagctcgatttgcttccatggccgcttcagagagagagagagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

145

Amino Acids

16.23

Weight (kDa)

6.58

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AccII CGCG 1 cut(s) 327
AciI CCGC 5 cut(s) 312, 325, 365, 370, 414
AclWI GGATC 2 cut(s) 280, 283
AcoI YGGCCR 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 6 cut(s) 22, 59, 97, 174, 346, 361
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw21I GWGCWC 1 cut(s) 157
AlwI GGATC 2 cut(s) 280, 283
AoxI GGCC 2 cut(s) 236, 411
ApeKI GCWGC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 343
BanI GGYRCC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 114
BccI CCATC 3 cut(s) 219, 227, 305
BciT130I CCWGG 1 cut(s) 124
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 1 cut(s) 273
BfaI CTAG 2 cut(s) 230, 378
BfoI RGCGCY 1 cut(s) 297
BisI GCNGC 2 cut(s) 103, 414
BlsI GCNGC 2 cut(s) 104, 415
Bme1390I CCNGG 2 cut(s) 124, 273
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 124, 273
BmsI GCATC 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 408
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bse118I RCCGGY 1 cut(s) 305
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 238, 413
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 272, 306
BsnI GGCC 2 cut(s) 238, 413
Bsp1286I GDGCHC 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 5 cut(s) 67, 85, 275, 285, 319
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 5 cut(s) 312, 325, 365, 370, 414
BspANI GGCC 2 cut(s) 238, 413
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 310
BspPI GGATC 2 cut(s) 280, 283
BspT107I GGYRCC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 5 cut(s) 67, 85, 275, 285, 319
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 282
BstAUI TGTACA 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 378
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 5 cut(s) 70, 88, 278, 288, 322
BstMBI GATC 5 cut(s) 67, 85, 275, 285, 319
BstMWI GCNNNNNNNGC 3 cut(s) 244, 401, 410
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 122, 271
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 238, 413
BtgI CCRYGG 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 42
CviAII CATG 2 cut(s) 161, 409
CviJI RGCY 4 cut(s) 122, 238, 395, 413
CviKI_1 RGCY 4 cut(s) 122, 238, 395, 413
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 290
DpnI GATC 5 cut(s) 69, 87, 277, 287, 321
DpnII GATC 5 cut(s) 67, 85, 275, 285, 319
EaeI YGGCCR 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 2 cut(s) 164, 412
FatI CATG 2 cut(s) 160, 408
FauNDI CATATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 103, 414
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 103, 414
FspBI CTAG 2 cut(s) 230, 378
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 103, 414
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 2 cut(s) 238, 413
HapII CCGG 2 cut(s) 272, 306
HhaI GCGC 1 cut(s) 296
Hin1II CATG 2 cut(s) 164, 412
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 139
HpaII CCGG 2 cut(s) 272, 306
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 3 cut(s) 114, 319, 421
Hpy188III TCNNGA 2 cut(s) 56, 230
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 348
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 401, 410
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 2 cut(s) 164, 412
HspAI GCGC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 5 cut(s) 67, 85, 275, 285, 319
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 6 cut(s) 47, 109, 136, 261, 285, 319
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 363
MaeI CTAG 2 cut(s) 230, 378
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 256, 349
MalI GATC 5 cut(s) 69, 87, 277, 287, 321
MboI GATC 5 cut(s) 67, 85, 275, 285, 319
MboII GAAGA 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 168, 355
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 5 cut(s) 26, 299, 325, 347, 374
MseI TTAA 2 cut(s) 167, 242
MspI CCGG 2 cut(s) 272, 306
MspR9I CCNGG 2 cut(s) 124, 273
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 244, 401, 410
NciI CCSGG 1 cut(s) 273
NcoI CCATGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 178
NdeII GATC 5 cut(s) 67, 85, 275, 285, 319
NlaIII CATG 2 cut(s) 164, 412
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 256, 349
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PkrI GCNGC 2 cut(s) 104, 415
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 236
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 167, 242
SatI GCNGC 2 cut(s) 103, 414
Sau3AI GATC 5 cut(s) 67, 85, 275, 285, 319
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 124, 273
SduI GDGCHC 1 cut(s) 157
SetI ASST 4 cut(s) 66, 351, 385, 397
SfaNI GCATC 1 cut(s) 363
Sse9I AATT 2 cut(s) 168, 355
SsiI CCGC 5 cut(s) 312, 325, 365, 370, 414
SspMI CTAG 2 cut(s) 230, 378
StyD4I CCNGG 2 cut(s) 122, 271
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 339, 397
TasI AATT 2 cut(s) 168, 355
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 416
Tru1I TTAA 2 cut(s) 167, 242
Tru9I TTAA 2 cut(s) 167, 242
TseFI GTSAC 2 cut(s) 256, 349
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 2 cut(s) 256, 349
TspDTI ATGAA 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 2 cut(s) 230, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.