Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Reverse (-)

37628675 .. 37642681

Gene Structure 14007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGCGATCTTAGGCCTTGGTCACCTGAGCCAAAAGGCGCTGTTTTGGAGGAGAGGCCGACCTCATCTTCTTCATCCGTGTTTTCAATTTCAACAAATCAGAGGGACGTTTCCACTGAGTACTGGCGGAGAGCGGAGGAGGCAATGCAGGGGGTTATAGCTCAGATCCAACGTACTCACGTCTCTGAGCGGAGAAGGAAAGCCGCCATTGATTACGTTCAGAGGATCATTGGAGCTTGTATTGGTTGTGTTCCCGTTTGGATCAGTACCTCTGAAGACGTATCTGCCGGATGGAGTGCTGTTGTTGAAAGGGAAGATCACAATATGGCTGCTGAGTTTATGGTGAAGGACGTGCAGTTAATTCGAGCAAAGGTTTGTAGGTTTTATGTACCCTATAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.19

Weight (kDa)

6.73

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	134, 190
AciI	CCGC	4 cut(s)	127, 134, 190, 204
AclWI	GGATC	3 cut(s)	160, 233, 269
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	4 cut(s)	122, 175, 268, 390
AgsI	TTSAA	3 cut(s)	87, 93, 308
AjiI	CACGTC	2 cut(s)	181, 352
AluBI	AGCT	2 cut(s)	161, 236
AluI	AGCT	2 cut(s)	161, 236
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	3 cut(s)	160, 233, 269
AoxI	GGCC	2 cut(s)	14, 56
ApeKI	GCWGC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	15, 355
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	285
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BcoDI	GTCTC	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	204, 330
BlsI	GCNGC	2 cut(s)	205, 331
BmcAI	AGTACT	1 cut(s)	122
BmgBI	CACGTC	2 cut(s)	181, 352
BpiI	GAAGAC	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	74, 296
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	5 cut(s)	18, 108, 176, 177, 324
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	65, 152
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	374
BshFI	GGCC	2 cut(s)	16, 58
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	16, 58
Bsp143I	GATC	5 cut(s)	7, 165, 225, 261, 316
BspACI	CCGC	4 cut(s)	127, 134, 190, 204
BspANI	GGCC	2 cut(s)	16, 58
BspCNI	CTCAG	5 cut(s)	19, 109, 175, 178, 325
BspPI	GGATC	3 cut(s)	160, 233, 269
BsrBI	CCGCTC	2 cut(s)	134, 190
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	5 cut(s)	7, 165, 225, 261, 316
BssT1I	CCWWGG	1 cut(s)	17
BstDEI	CTNAG	6 cut(s)	11, 27, 117, 162, 186, 333
BstEII	GGTNACC	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	74, 296
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	10, 168, 228, 264, 319
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	5 cut(s)	7, 165, 225, 261, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	16, 58
BtrI	CACGTC	2 cut(s)	181, 352
BtsCI	GGATG	2 cut(s)	74, 296
BtsIMutI	CAGTG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	41
Csp6I	GTAC	4 cut(s)	121, 174, 267, 389
CviJI	RGCY	7 cut(s)	16, 31, 58, 161, 203, 236, 329
CviKI_1	RGCY	7 cut(s)	16, 31, 58, 161, 203, 236, 329
CviQI	GTAC	4 cut(s)	121, 174, 267, 389
DdeI	CTNAG	6 cut(s)	11, 27, 117, 162, 186, 333
DpnI	GATC	5 cut(s)	9, 167, 227, 263, 318
DpnII	GATC	5 cut(s)	7, 165, 225, 261, 316
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	17
Eco147I	AGGCCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	21
EcoO65I	GGTNACC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	187
FaiI	YATR	7 cut(s)	158, 326, 341, 387, 396, 401, 403
FaqI	GGGAC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	204, 330
FokI	GGATG	2 cut(s)	61, 303
Fsp4HI	GCNGC	2 cut(s)	204, 330
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	204, 330
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	16, 58
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	15, 355
Hpy188I	TCNGA	5 cut(s)	102, 165, 187, 222, 274
HpyAV	CCTTC	2 cut(s)	189, 340
HpyCH4IV	ACGT	6 cut(s)	108, 172, 180, 216, 279, 351
HpyCH4V	TGCA	2 cut(s)	148, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	6 cut(s)	11, 27, 117, 162, 186, 333
HpySE526I	ACGT	6 cut(s)	108, 172, 180, 216, 279, 351
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	7, 165, 225, 261, 316
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	4 cut(s)	39, 109, 134, 301
Lsp1109I	GCAGC	1 cut(s)	316
MaeII	ACGT	6 cut(s)	108, 172, 180, 216, 279, 351
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	5 cut(s)	9, 167, 227, 263, 318
MbiI	CCGCTC	2 cut(s)	134, 190
MboI	GATC	5 cut(s)	7, 165, 225, 261, 316
MboII	GAAGA	4 cut(s)	60, 63, 287, 326
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	2 cut(s)	87, 360
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	8 cut(s)	43, 48, 73, 96, 130, 133, 216, 280
MseI	TTAA	1 cut(s)	359
MspI	CCGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeI	CATATG	1 cut(s)	401
NdeII	GATC	5 cut(s)	7, 165, 225, 261, 316
NmuCI	GTSAC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	205, 331
PspEI	GGTNACC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	4 cut(s)	122, 175, 268, 390
RsaNI	GTAC	4 cut(s)	121, 174, 267, 389
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	204, 330
Sau3AI	GATC	5 cut(s)	7, 165, 225, 261, 316
ScaI	AGTACT	1 cut(s)	122
Sse9I	AATT	2 cut(s)	87, 360
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	4 cut(s)	127, 134, 190, 204
StuI	AGGCCT	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	17
TaiI	ACGT	6 cut(s)	111, 175, 183, 219, 282, 354
TaqI	TCGA	1 cut(s)	364
TasI	AATT	2 cut(s)	87, 360
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	121
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.