Rorug02G0564600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000819
Physical Location & Seq
Reverse (-)
68967223 .. 68968913
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0564600.1

Sequence Viewer

Length: 1089 bp
ATGTCTTGGTTTCTAACAATATTCTTCCTCATTAGTTTCACATTTAGTACTCCTTCAGAGGCTAACCATGAGAAGAAGCTTCAACCTGCTGTGGTTATAGGCAAAGTTTACTGTGAGACATGTTTCCAAGATGGGTTCTCAAAATCCAGCCACTTCATTTCAGGGGCTTCTGTTGGTGTGGAGTGCAAAGATCAGACTTCATCAAAACCCAGCTTTCAAGCCCAAGTGAAGACAGATAACCAAGGAGTGTTCAAAGTCCAATTGCCTTTCTCAGTGAGCAAACATGTGAAGAAAATTGAAGGGTGTTCTGTGAAGCTGATTTGCAGCAGCGAACCGTATTGTGCTGTGGCCTCAGCAGCAGCTTCATCTTCACTTCACCTCAAATCAAGGAAGCAAGGAACTCACATTTTCTCAGCTGGGTTTTTCACCTTCAAGCCCCTAAACCAACCCAACCTATGTAACCAAAAACCAAGCCTCATCCAAAACAACAAGAAGGAAGTTATCACTAATTCCAAGAAACTCTCATTTTCTCCAACTGAGGATTTGACATTTCCCTCACCAGTTCAAGAACCCAGCTTTCCTGGTGTTCCTTCTCTCCCTAGACTTCCTTATCTTCCACCACTACCACAACTCCCTCCTCTCCCAGGCCTTCCAGGACTCCCAGGTCTTCCAGGACTTCCAGGAATGGGAATTCCAACTTTACCCCTCATCCCAGGAAAAGTAACGGAGTCCCATTCCAATACCAAAACTACAACTACCTCTTCAAAGACAGAGAGGCACCTAACTGAAGAAGAAAAACTAGCCCGCCCAGATTTTTTCTTCCCACCGAACCCTCTCAATCCACCATCAATTTTGCCTCCAAACCCTCTTCTGCCAAGCCCACCTCCACTTATCCCAAACCCATTTCAGCCTCCACCAGCACCATTGATTCCAAATTTGCCACCATTGCCTAGCTTGCCACCACTACCAAGTTTAACTCCACCATCTCCACCACCACCATCATTCCCAACAATCCCTCCATTGCCTCCATTCCCATTCCCACCTGTACCTCTCATCCCTGGAATCCCCCCTGCTTCTTCCTCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

38.86

Weight (kDa)

9.2

Isoelectric Point (pI)

67.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 120 5.5e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 663
Acc36I ACCTGC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 777
AciI CCGC 1 cut(s) 805
AcsI RAATTY 2 cut(s) 690, 934
AcuI CTGAAG 2 cut(s) 39, 807
AfaI GTAC 2 cut(s) 49, 1047
AfiI CCNNNNNNNGG 2 cut(s) 644, 686
AflIII ACRYGT 2 cut(s) 119, 283
AgsI TTSAA 7 cut(s) 83, 218, 253, 299, 433, 566, 765
AjnI CCWGG 8 cut(s) 580, 643, 652, 661, 670, 679, 712, 1057
AluBI AGCT 7 cut(s) 79, 213, 316, 362, 416, 576, 954
AluI AGCT 7 cut(s) 79, 213, 316, 362, 416, 576, 954
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 2 cut(s) 348, 646
ApeKI GCWGC 4 cut(s) 324, 327, 356, 359
ApoI RAATTY 2 cut(s) 690, 934
AsuHPI GGTGA 3 cut(s) 368, 418, 549
BanI GGYRCC 1 cut(s) 777
BbsI GAAGAC 2 cut(s) 236, 659
BbvCI CCTCAGC 1 cut(s) 352
BbvI GCAGC 4 cut(s) 336, 339, 368, 371
BccI CCATC 4 cut(s) 125, 853, 991, 1006
BciT130I CCWGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 3 cut(s) 600, 800, 951
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 4 cut(s) 325, 328, 357, 360
BlsI GCNGC 4 cut(s) 326, 329, 358, 361
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
BmiI GGNNCC 1 cut(s) 779
BmrFI CCNGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
BpiI GAAGAC 2 cut(s) 236, 659
Bpu10I CCTNAGC 1 cut(s) 352
BsaJI CCNNGG 5 cut(s) 241, 643, 661, 712, 1057
BsaXI ACNNNNNCTCC 4 cut(s) 615, 645, 1000, 1030
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 686
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 2 cut(s) 944, 1019
BseBI CCWGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
BseDI CCNNGG 5 cut(s) 241, 643, 661, 712, 1057
BseGI GGATG 3 cut(s) 477, 708, 1053
BseLI CCNNNNNNNGG 2 cut(s) 644, 686
BseMI GCAATG 2 cut(s) 944, 1019
BseMII CTCAG 4 cut(s) 285, 366, 426, 528
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 627
BseXI GCAGC 4 cut(s) 336, 339, 368, 371
BseYI CCCAGC 3 cut(s) 209, 416, 572
BshFI GGCC 2 cut(s) 350, 648
BshNI GGYRCC 1 cut(s) 777
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 644, 686
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 2 cut(s) 350, 648
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 805
BspANI GGCC 2 cut(s) 350, 648
BspCNI CTCAG 4 cut(s) 284, 365, 425, 529
BspLI GGNNCC 1 cut(s) 779
BspMI ACCTGC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 777
BsrDI GCAATG 2 cut(s) 944, 1019
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 5 cut(s) 241, 643, 661, 712, 1057
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
Bst4CI ACNGT 2 cut(s) 113, 336
Bst6I CTCTTC 2 cut(s) 766, 873
BstC8I GCNNGC 2 cut(s) 805, 956
BstDEI CTNAG 4 cut(s) 271, 352, 412, 537
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 3 cut(s) 477, 708, 1053
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 356, 946, 955
BstNI CCWGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
BstNSI RCATGY 2 cut(s) 123, 287
BstSCI CCNGG 8 cut(s) 580, 643, 652, 661, 670, 679, 712, 1057
BstV1I GCAGC 4 cut(s) 336, 339, 368, 371
BstV2I GAAGAC 2 cut(s) 236, 659
BsuRI GGCC 2 cut(s) 350, 648
BtsCI GGATG 3 cut(s) 477, 708, 1053
BtsIMutI CAGTG 1 cut(s) 279
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 805, 956
Csp6I GTAC 2 cut(s) 48, 1046
CviAII CATG 3 cut(s) 68, 120, 284
CviQI GTAC 2 cut(s) 48, 1046
DdeI CTNAG 4 cut(s) 271, 352, 412, 537
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DrdI GACNNNNNNGTC 1 cut(s) 663
DseDI GACNNNNNNGTC 1 cut(s) 663
Eam1104I CTCTTC 2 cut(s) 766, 873
EarI CTCTTC 2 cut(s) 766, 873
Eco130I CCWWGG 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 648
Eco57I CTGAAG 2 cut(s) 39, 807
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoRI GAATTC 1 cut(s) 690
EcoRII CCWGG 8 cut(s) 580, 643, 652, 661, 670, 679, 712, 1057
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 71, 123, 287
FaiI YATR 5 cut(s) 69, 98, 121, 285, 457
FaqI GGGAC 1 cut(s) 715
FatI CATG 3 cut(s) 67, 119, 283
FauI CCCGC 1 cut(s) 812
Fnu4HI GCNGC 4 cut(s) 325, 328, 357, 360
FokI GGATG 3 cut(s) 464, 695, 1040
Fsp4HI GCNGC 4 cut(s) 325, 328, 357, 360
FspBI CTAG 3 cut(s) 600, 800, 951
GluI GCNGC 4 cut(s) 325, 328, 357, 360
GsaI CCCAGC 3 cut(s) 213, 420, 576
HaeIII GGCC 2 cut(s) 350, 648
Hin1II CATG 3 cut(s) 71, 123, 287
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 4 cut(s) 657, 728, 928, 1062
HphI GGTGA 3 cut(s) 368, 418, 549
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 58, 195
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 6 cut(s) 63, 293, 439, 487, 600, 659
HpyCH4III ACNGT 2 cut(s) 113, 336
HpyCH4V TGCA 2 cut(s) 186, 324
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 946, 955
HpyF3I CTNAG 4 cut(s) 271, 352, 412, 537
Hsp92II CATG 3 cut(s) 71, 123, 287
Kzo9I GATC 1 cut(s) 190
Lsp1109I GCAGC 4 cut(s) 336, 339, 368, 371
MaeI CTAG 3 cut(s) 600, 800, 951
MaeIII GTNAC 2 cut(s) 458, 721
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MfeI CAATTG 1 cut(s) 260
MluCI AATT 6 cut(s) 260, 294, 508, 690, 849, 934
MlyI GAGTC 2 cut(s) 651, 737
MmeI TCCRAC 2 cut(s) 557, 719
MseI TTAA 1 cut(s) 974
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
MwoI GCNNNNNNNGC 3 cut(s) 356, 946, 955
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 71, 123, 287
NlaIV GGNNCC 1 cut(s) 779
NspI RCATGY 2 cut(s) 123, 287
PceI AGGCCT 1 cut(s) 648
PciI ACATGT 2 cut(s) 119, 283
PfeI GAWTC 2 cut(s) 928, 1062
PfoI TCCNGGA 3 cut(s) 652, 670, 679
PkrI GCNGC 4 cut(s) 326, 329, 358, 361
PleI GAGTC 2 cut(s) 651, 736
PpsI GAGTC 2 cut(s) 651, 736
PscI ACATGT 2 cut(s) 119, 283
Psp6I CCWGG 8 cut(s) 580, 643, 652, 661, 670, 679, 712, 1057
PspFI CCCAGC 3 cut(s) 209, 416, 572
PspGI CCWGG 8 cut(s) 580, 643, 652, 661, 670, 679, 712, 1057
PspN4I GGNNCC 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 49, 1047
RsaNI GTAC 2 cut(s) 48, 1046
SaqAI TTAA 1 cut(s) 974
SatI GCNGC 4 cut(s) 325, 328, 357, 360
Sau3AI GATC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 651, 737
ScrFI CCNGG 8 cut(s) 582, 645, 654, 663, 672, 681, 714, 1059
Sse9I AATT 6 cut(s) 260, 294, 508, 690, 849, 934
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 1 cut(s) 805
SspI AATATT 1 cut(s) 21
SspMI CTAG 3 cut(s) 600, 800, 951
StuI AGGCCT 1 cut(s) 648
StyD4I CCNGG 8 cut(s) 580, 643, 652, 661, 670, 679, 712, 1057
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 113, 336
TasI AATT 6 cut(s) 260, 294, 508, 690, 849, 934
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 928, 1062
Tru1I TTAA 1 cut(s) 974
Tru9I TTAA 1 cut(s) 974
TscAI CASTG 1 cut(s) 279
TseI GCWGC 4 cut(s) 324, 327, 356, 359
TspDTI ATGAA 3 cut(s) 145, 189, 354
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 642
XapI RAATTY 2 cut(s) 690, 934
XceI RCATGY 2 cut(s) 123, 287
XspI CTAG 3 cut(s) 600, 800, 951
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.