FvH4_5g05150

proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000819
Physical Location & Seq
Forward (+)
3005826 .. 3007505
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05150.t1

Sequence Viewer

Length: 228 bp
ATGGCGGCGACGGAGCCAAAGGCTGTGAGTGAGGTCGCCAAGATGGACCTGTTTGAAGACGATGATGAGTTCGAGGAGTTTGATATCAATGAAGAATGGGAGGACAAAGAGGAAGGCAAGGAAGTGACACAACAATGGGAGGATGACTGGGATGATGATGACGTTAATGACGACTTCTCTCTCCAGCTGAGGAGGGAGTTGGAAAACAACACTGAGAAGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

76

Amino Acids

9.02

Weight (kDa)

4.05

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSS1_SEM1 PF05160 12 - 69 6.6e-18 DSS1/SEM1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 37
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 148, 157
BseMII CTCAG 2 cut(s) 179, 204
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 89, 205
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 180, 205
BspLI GGNNCC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 188, 213
BstF5I GGATG 2 cut(s) 148, 157
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 2 cut(s) 148, 157
BtsIMutI CAGTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 46
CviJI RGCY 3 cut(s) 16, 23, 187
CviKI_1 RGCY 3 cut(s) 16, 23, 187
DdeI CTNAG 2 cut(s) 188, 213
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 46
EcoRV GATATC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 155, 164
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 188, 213
HpySE526I ACGT 1 cut(s) 162
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 62, 133, 197
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 124
MboII GAAGA 2 cut(s) 68, 104
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 25, 67, 94, 103, 133, 183, 186
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 46
SetI ASST 4 cut(s) 36, 51, 165, 189
SgeI CNNG 6 cut(s) 52, 61, 85, 130, 160, 196
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 133
SsiI CCGC 1 cut(s) 5
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 72
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.